Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0264900 |
| Transcript ID | LotjaGi1g1v0264900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT1G44110.1 Cyclin A1;1; Swiss-Prot: sp|Q9C6Y3|CCA11_ARATH Cyclin-A1-1; TrEMBL-Plants: tr|I3T0K9|I3T0K9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64762638..64769176) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTCAAACTTCAAACCAACACAAAACCACGTGGTCCCCACCCCGCTCCCTAGTTAACGAATACCGAGCCCGAATCAA CGGCCCAGATTCTTCCCCATTTCAAAAACCCTCCCTTTTCCCCGCCTCATTACCTCATTTAATAAATGTAAATTCAACCC AATTTATTGCACTCACTCACTCACTCACTCTCTCACTCACGCTTTTTTCTTCTTCACAGTAACGCTCTGAAAACCAGAGC AAAAAAGCAACAACACAAACAACACACTCTCTCTTTCTCTCTTTTTCTTTTTGTTCTTGCTTGGTTCTTCTTGCAAACAG AGCTAACGCATTGAGCAAAATTTGAATAATGTCGTCGAACAATCATCGCCGTTCATCGTTCTCTTCCTCCACCGCATCGT CGTTAGCCAAACGCCATGCATCAGACAACAACAACAACAATAACAATAACTACGTCGTTGGTGCGGCGGCGGTTAAGGCT CCGGCCGCCGCTTCTCACTCCGCCAAGAAGCGTCCCCCTCTCTCCAACCTCACCAATCACATCGCTTCTCGCAACTCATC GTCACAGTCATTGGTATTACTCACTTCCTTCTTTCTTTATTCGCCTCTTAACAATGTAGAGAGAAAGAAAAACAAGAAAA CCTAATCGCCAGAAAATTTTGATCAATTTTCGTTCATTTCTCTGTAAATCAATTTTCGATTGTTGATTCTGCAAATTTCT TAGGTTTTGAAATTTGAATTGGTAGGTACCATGCGTGAGTAAATTTGCGAAAACCAAGAAAGAGGCACCTCCTAAAGTAG CACCTGCTTTGCCGAATGTGAAATCTGCTGCTGCTGCGGTTGTTTTTCCTAAGGTTGCTACTGCTACTGCTTCGTTCACT GAAAGGAACGAAGATGATGCTGCTGCTGCTGCTTCAGGGGCTAGAGTTTCTGTTCCTGTTTCGACCAGCATGGATGTTTC CCCTTGTAAATCTGATGGGTGTTCGGTTTCTATGGATGAGTCCATGTCTTCTTGTGATTCTTTCAAGAGTCCTGCTGAGA TTGAATATGTGGACAATAGTGATGTTTCAGCTGTGGATTCTATTGAGAGGAAGACATTCAGCATTTTGAACATCTCTGAT GCTAAAGAGCAAGCAGGTTTGATTCAAATTGTTGCAGTTTTTGCATTTCTTGTTTCCCATTTTTAAAATTTATGATTTCT TAGTCAAATTTACAAGAAATTTGGCCAATCAAGTTTTGGGATGTGATTTCTTATACCTTTAGTTAGTACTAGCACCTTCT AATTTGGTTTCATTTATTTGTTTGCAGGAAACATCTGTAGTAGGGACATTCTTGTTGAGGAATTGGAAAAGGGGGAGAAA ATTGTTAATATTGATAATGATCACATGGATCCCCAGCTCTGTGCTTCCTTTGCTTGTGATATCTACAAGCACCTGCGTGC ATCTGAGGTAAAAACCTTCATTCTCCCTGTTAACAATGATCTCTGTTATGTTCACACCTTATATGGAATATTAGGATTTG TTCTAATTTTGAGGTCTTGACTTGAAACATGCCAAATATAGCTAATGAAATAATAATTAGTAGTTATTCTGATTGTTCTT ATCTTTTGCAATTTTTGGAATGATAGGCAAAGAAAAGACCTTCCACAGATTTCATGGAGAAAGTTCAGAAGGATATAAAT ACCAGCATGCGTGCTATATTGATCGACTGGCTTGTGGAGGTAATGTTTGTTTAAAAGTCAATTAGTCATGACTAATGTAG ACATTACACACCCTGCATTTGAGCCTTGCCACATTTGAAGTTGCAAAATAATACTGATATGAATTCATTGCAAATTGGGA ATGACAACACTATTCATGATAACATGTGTCAAATTAGAGTTCATTCATTATCTAAACGACTAAACATTTGTTTCTGAATG TAGGTGGCTGAAGAGTATAGACTAGTACCTGATACATTGTATTTGACAGTAAACTACATAGATCGGTATCTCTCAGGGAA TGCAATGAGCAGGCAAAAGTTACAATTACTTGGGGTTGCCTCCATGATGATTGCCTCGTAAGGATGCACACAAGTCCCTT GTGTTTTCTGATTGAAGGGTTTCTACCATGATTTTTCTAGCTACATGAAGGCATGTAGTAATAAGATTTGGTTTTTCTTT ATGGTTTGCAGGAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGACAACACATACTTCAA AGAGGAGGTTAGGATTTGATTTCTTTGATTAAACTTTGCACTTGTATTTGAAGTGTGCATATATCTAAAGCAAATCATTC CACCATGCAGGTCTTACAGATGGAATCTGAAGTCTTGAATTTTCTGAAGTTCGAAATGACAGCCCCAACAATCAAATGTT TCTTAAGGTAGTAGTAGTTAAAGGATAACTATCACATTGGCCTTTTGAAGTACTTTGACACTGACCAAATAAATTTATTT TAATCTGATTTCAGACGATTTGTACGTGCAGCTCAAGGAGTTGAAGAGGTATTTCCTCATGCGATTCTGAATACTTATTA ATTGGTTTTAAGAATATGGTAAAATCAGTTTCTAATTACAGTCAAGAAAACATGTGTACAGTGGTACTACTAGTTATTTC CAATTTTCCATGTTATAAGATAGCATTGATGAATGATGGGTCATGGTGGTTAATTCCTTTTGTCGCTCTTGAACCATATT TCTTGGAATTAATGTGAAATCCATTTCTAAAGTATTGCCCCCCTCTTATAGTGGTTTTATCTGCATTTCTCAGGTCCCTT CCCTGCAACTTGAGAGTTTGACAAACTACATTGCCGAATTGTCTCTCATGGAGTACAGCATGCTTTGTTATGCACCATCA CTTGTAGCTGCTTCTGCAATTTTCCTGGCCAAATTTATACTATTCCCTTCAATAAAACCATGGGTATGTTGATTCTTAAT AACAGATTATGCAGACCATTACCAATGGACTTCAATTTTTAATAACAGATTATACTTTCTTTTTGCAACAGAGTTCAACA TTGCAGCATTACACACTCTACCAGCCTTCTGATTTGTGTGTTTGTGTAAAAGAACTCCATCGCCTTTTTTGCAACAGCCC TAATTCTAATTTGCCCGCAATTAAGGAGAAATACAGTCAACACAAGGTAAAAAGGAGGACACTGTCCCCTTCCTCTTACC TTGGAAGCACTTCATAAGATTTTTTATTCTATATAACCTGTTTGAGTAGTTTTCCTCATAGTTTTTGTTTGCGTTTCAGT ACAAATATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCTTCAGAATTTTTCCAGAATTGAGAGGAGATGACAGTCCAA TTTCCAGTTGGATAGGATTAGATTGACATAGCATTTCTCTCCAGAGAAAGGCTCTTTAGAAAATATCAATGCTTCAAGAG TTAACTTGTATTGATAGCTATTGCTTCAGCATCATTAATGGCTAGAAGGAATCAAATGTCTAAATTTGTTGTCCAAATTA TCTACTACTCTACTCTCACATCTCTCACATCTCTCTGGAAAATATGACAAATTAGTAGCAGAAGCACCTTATTAATATTT CTAAAACATTAATATTTGTATCACATCTCTCTGATACAACATGCTCTTAATATTTGCTTGTGCAATTGAATGAACAGCTT AATTAAACATTTAAATCAATAAACTCTAATCACATAATAAACTCAATAAAATAAGTTCAAAAGAGCTAATGTAGATACAA CATGCACTTATTCATAAGCTAATATGTAATGATTATCAACAAAAGCTTAAAAGAGCTTAATTAATAAGACTTTTTTCCTG TAAGTAGTCGTTTGGCACTGCTTGTTTAGTACATGATACATACATAATCCACTGAAGTTTAGCTTACTGACTAGCATGAC AAGATCAAAATCCCAAGAGTTGCATGCTCAACATACATGTACCATCAAGATGATAAGATCACAATATACCATGCTCAATC TACATTTTTACATCCCTTATTTTTCAAGTATCTTTCATATCCAAGCGCCCGTAGTCTGCAGCTCAGAACTCAAAAGTGAT AGCATATACAAAAATTAGAGCAGAAACGAGCATATCACACACCACATTGAGGCTTTGATAAAGGGATAGAGTAAGGGCAA GAAGGCAGACCCAAAGCCATCCTATTGGGAAAGTCATTGAGCCAATGACAATCTTCAAAAGAGCAATAAAGTCCACCCTT AGGCCTCTCAACATTCACAGGCTTCATATACTTTGGTGCCCAAGCTGGGGTTCCATCCTCATATGAATTATGGGTCAACC TCTTTAAACCCGAACCGTCAAACCCAATGGTGAATATTTCACCATAGGGCTGGTAGGCGTGCGGGTTTGAGATTGGCTCT GCTGATATGCCCGCATAGTCCGACGTGAACACCAAATTCTTCCCGTCAGGGCTGAAATACGGGTGGTTCGTCCTCCCACC CGACCCGCTCTGAATCACCTTCCTCAACCCGGTTCCATTCGGGTGGATCAGGTAAAGCTCGAAGCTACCACTACCCGGGT CATGGCGGTCAGAAGCAAAAGCGATCCATTCTCCGTCCGGTGACCAATTGCACATGGTGTCCGTCCATGGACCCTCCGTC AACCTTCTAAGTCCCTTTATCTCTCCACCAACTGCATCCATCATGTAGAGATTCTTGTGACCCGTCCGACCCGACCGGAA CACGATCCATTTCCCGTCCGGTGAAGGTGACGGGAACGCGTTGTTCATTCCATCGACAGTCAACTTCTTGATGGTGTTAC GGTCAACGTCGATGGAGACGATGTCAACCCCGGCGCTCTCCGGGGCAAAGGTTTCTCCGATGGCGGTGTAGATGACGCCA GGTCGGACACGGTCCCACGCGGTTGAGAACGCCATCGCGTCGGAAACCTTCCGCAGGTTTGAACCGTCCCGGTTCACGAC GTAAACTCCCGGCATCTCCACGTAAGCGATTTGGTCGCCGGAGGGTGAGAAAACGGGAAATGAACCGGTGAAGCGGAAGA GGGTTAGGCCGGGAACAGGGCTCTGAACATTCTCGAGCAAGAACTGGGGGCTTTTGTTGCTGGATTCTCCTCTGCACTTG TGGTATCCGACCCGGGACGAATCGGGTGAGATGAACGGGTTGAGATGGTGGGAACGGGGTGAGACGAAGCGAGTAAGCTC CCTGAACTCTTTGTTAACCAGGTTGAACAGCTCGATGTGGCGGAAACTTGAACCTGGCCTTCTCGTAGCGACGGCGATGA ACTCGTGGTTTCCCGGTGAGGTCGCGGGAGTGAACGCGTGGAGACCCGGTGGCGTGACTCGTTCAACGACCACCGAGTCA GCGGAATCGGCGGGGAGGGTGGCTCTGTAAATGCTCCACCACTTGTCATCGCCTCTCCGGTGAAAGTAAATCGTGCGATC GTCGACCCAGCAAGGCCAGCCACCGTGCTCGACCACCTTGACCCGGTTAGTTCCGTCGCGAGTCAGGAAGATGTAGATGT CTGTGGTGAGATCCTCCACCTCGCCGGACCATCCAGCGCTTCCGTAGGAGGCGACCGCAGTCCACACACCGGAGGGGGAC AGGGCGGGGCTGAAATCAGCGACGCCGTGAGGGGTGAGCCGTCGGGTCAGACCCGATTTGAGGTGGGTGGAGTAAACCGC AGCCCAACTGACCCGGGACACACCTGGGTCTTCATGGGTCGACACATACACCAAATACTCACCATCGCTGGTCACGCTAG GCTTGTCTTTGATGGAAACTTGAGCTTCACCGAGATGATTCGGTAACAGAGGGAGTTGGATTCTCTCTGTGGTGAATGAT TCGAGGGCAGATCTTCTTGTGGTGGTGGTCGCGGTGGTGTAAACGGCGTCGTAGTAGATGGTGGGGAGGCCGCTTCTCTC GGTGACGTAAACGAGTTGCAGGGGAGGAGGTGGGTCAGTAGGGAGTTGGATGGCGGTGTTGTTGGCGAGGAATTGGCCGT TGAAATTGACGGAGCGGCCGTCGGTGAGTCGAAGCTCGTCGTGAGGGGAGGGTGGTTGGTGGTGGTGAATCGGGAGGGAG TAGATGTCGAAGGAGTAGAAAGCTCTGCCAAGTGTGGTGAAGATGATGCTTTGCTCCTCCTCAGATGCTAAACATAGTGG GAACAGCAACACTATCAACAGAAAAGGTAAGTGGTGTGGTTTCATTGTTACTACTGATTGTGTGTGTTGTGAAGCTTGCA TCTTGTGGTGAAGTGAATGGTGATGATGAGTAATTGAGTATAAAGTGGAGCTTTTTCATATGCTTGTGTCTTTGTCCATG CCTGTCAATTTTTATCTTTGGATATCTCTGTGGCCCAATACTTGCAATTTTTGATCATCACATAAATTTGGAAACCAAAT CTAGGAAGCTCTAGTATGTTAATAAATATCATAATGTATGTATGTACATAAAATGGTCTGTTCTTTGTTTTGTTTCTATC TGTTTAAGCTTAGGGCTCGTTTGGCACGCCGTATTAGGCATGATAGTATAAGCTTATAC
CDS sequence (LotjaGi1g1v0264900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCGAACAATCATCGCCGTTCATCGTTCTCTTCCTCCACCGCATCGTCGTTAGCCAAACGCCATGCATCAGACAA CAACAACAACAATAACAATAACTACGTCGTTGGTGCGGCGGCGGTTAAGGCTCCGGCCGCCGCTTCTCACTCCGCCAAGA AGCGTCCCCCTCTCTCCAACCTCACCAATCACATCGCTTCTCGCAACTCATCGTCACAGTCATTGGTACCATGCGTGAGT AAATTTGCGAAAACCAAGAAAGAGGCACCTCCTAAAGTAGCACCTGCTTTGCCGAATGTGAAATCTGCTGCTGCTGCGGT TGTTTTTCCTAAGGTTGCTACTGCTACTGCTTCGTTCACTGAAAGGAACGAAGATGATGCTGCTGCTGCTGCTTCAGGGG CTAGAGTTTCTGTTCCTGTTTCGACCAGCATGGATGTTTCCCCTTGTAAATCTGATGGGTGTTCGGTTTCTATGGATGAG TCCATGTCTTCTTGTGATTCTTTCAAGAGTCCTGCTGAGATTGAATATGTGGACAATAGTGATGTTTCAGCTGTGGATTC TATTGAGAGGAAGACATTCAGCATTTTGAACATCTCTGATGCTAAAGAGCAAGCAGGAAACATCTGTAGTAGGGACATTC TTGTTGAGGAATTGGAAAAGGGGGAGAAAATTGTTAATATTGATAATGATCACATGGATCCCCAGCTCTGTGCTTCCTTT GCTTGTGATATCTACAAGCACCTGCGTGCATCTGAGGCAAAGAAAAGACCTTCCACAGATTTCATGGAGAAAGTTCAGAA GGATATAAATACCAGCATGCGTGCTATATTGATCGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCTGATA CATTGTATTTGACAGTAAACTACATAGATCGGTATCTCTCAGGGAATGCAATGAGCAGGCAAAAGTTACAATTACTTGGG GTTGCCTCCATGATGATTGCCTCGAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGACAA CACATACTTCAAAGAGGAGGTCTTACAGATGGAATCTGAAGTCTTGAATTTTCTGAAGTTCGAAATGACAGCCCCAACAA TCAAATGTTTCTTAAGACGATTTGTACGTGCAGCTCAAGGAGTTGAAGAGGTCCCTTCCCTGCAACTTGAGAGTTTGACA AACTACATTGCCGAATTGTCTCTCATGGAGTACAGCATGCTTTGTTATGCACCATCACTTGTAGCTGCTTCTGCAATTTT CCTGGCCAAATTTATACTATTCCCTTCAATAAAACCATGGAGTTCAACATTGCAGCATTACACACTCTACCAGCCTTCTG ATTTGTGTGTTTGTGTAAAAGAACTCCATCGCCTTTTTTGCAACAGCCCTAATTCTAATTTGCCCGCAATTAAGGAGAAA TACAGTCAACACAAGTACAAATATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCTTCAGAATTTTTCCAGAATTGA
Protein sequence (LotjaGi1g1v0264900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSNNHRRSSFSSSTASSLAKRHASDNNNNNNNNYVVGAAAVKAPAAASHSAKKRPPLSNLTNHIASRNSSSQSLVPCVS KFAKTKKEAPPKVAPALPNVKSAAAAVVFPKVATATASFTERNEDDAAAAASGARVSVPVSTSMDVSPCKSDGCSVSMDE SMSSCDSFKSPAEIEYVDNSDVSAVDSIERKTFSILNISDAKEQAGNICSRDILVEELEKGEKIVNIDNDHMDPQLCASF ACDIYKHLRASEAKKRPSTDFMEKVQKDINTSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMSRQKLQLLG VASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESEVLNFLKFEMTAPTIKCFLRRFVRAAQGVEEVPSLQLESLT NYIAELSLMEYSMLCYAPSLVAASAIFLAKFILFPSIKPWSSTLQHYTLYQPSDLCVCVKELHRLFCNSPNSNLPAIKEK YSQHKYKYVAKKYCPPSIPSEFFQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 410 | 410 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 37 | 37 | - | – | |
| MobiDBLite | 1 | 72 | 72 | - | – | |
| PIRSF | 3 | 502 | 500 | 2.8E-126 | – | |
| PANTHER | 45 | 504 | 460 | 5.7E-204 | ||
| PANTHER | 45 | 504 | 460 | 5.7E-204 | – | |
| MobiDBLite | 55 | 72 | 18 | - | – | |
| SUPERFAMILY | 233 | 369 | 137 | 7.49E-48 | ||
| Pfam | 243 | 369 | 127 | 2.7E-45 | ||
| Gene3D | 245 | 490 | 246 | 1.9E-97 | – | |
| Gene3D | 257 | 370 | 114 | 1.9E-97 | – | |
| CDD | 273 | 362 | 90 | 2.06483E-21 | ||
| ProSitePatterns | 274 | 305 | 32 | - | ||
| SMART | 279 | 363 | 85 | 5.9E-25 | ||
| CDD | 370 | 463 | 94 | 9.52291E-16 | ||
| SMART | 372 | 495 | 124 | 2.3E-36 | ||
| SUPERFAMILY | 372 | 497 | 126 | 8.26E-36 | ||
| Pfam | 372 | 491 | 120 | 1.4E-31 | ||
| SMART | 376 | 464 | 89 | 1.7E-18 | ||
| Phobius | 411 | 433 | 23 | - | – | |
| Phobius | 434 | 505 | 72 | - | – | |
| Coils | 500 | 505 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0264900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…