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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0273900 |
| Transcript ID | LotjaGi1g1v0273900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome maturation factor rimP; TAIR: AT1G77122.1 Uncharacterized protein family UPF0090; Swiss-Prot: sp|B0SH16|RIMP_LEPBA Ribosome maturation factor RimP; TrEMBL-Plants: tr|I3SSQ9|I3SSQ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0273900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67181116..67185026) extracted from Lotus japonicus Gifu genome v1.2.
AGACGTTTTACCGAAAAAAAGGAGCTGGATGATCTTCATTCTTCAATATTGTGTTGAGCTTCTGCTCCTCTTCAAAAAAC CAAATGGATTTGGTTAAAGCTTCAAGCCTGAAACCATGGCGAATTCCTTCACCGCCACTAATTAACATCACCACTTCGAC TGCTACCACCTTCTATTTCTCTCCTCGCTCTTCAAAAAATTTCTCGTTTCCATTTTCAACCTTTCAAGTTCAACACACTC AGTTAAAGCCCCTAATTCTCCATGGCAAGAAGAGAAACTCCTCTGATTCCGAACCAGTTCTCGAACCCACCATCGTCCAA GAAGTATCAATGGATGAAGAAGAAGACGATGAATTCGATTACGGTAGAGCTGCTCTCAACCTCTCAACTCTCACTCTCAC TCTCTCTTTCTCAACTCTCGATTGAAGTTCTTCATTGCACAGAGGAACCACTGAACGACGAGGACGAGGACGGTGACGAG TACTATGACGACGACGAACAAGAAGAAGAAGAGTTTGAGGATGAAGATGAGGATAGTGTGCCCTATGTAGGTTTTGTTAA AAGCTTGATATTTTTGTGTGTGTTGTTGTTGATAGAAAATGGTCAATTTTGGTGTGGAATGTGTGATTTTTTTCACGTTT TTGAAGGCAGGTGATGGGGGTTCAGGTGGTGGAATTTCCCTTGCCGGATCATGGTGGGATAAAAAGGCACTAGCTATTGC TAAAGAGGTTACTGAGTCTTTTGATGGTGATTTGCAAATTTATGCTTTTAGAACGCTGCTGCGTAACTCCGCCATTCAAG TTCGCATTGAGAAGCTTTCCAACAAGTAAGGCATTGTTATTAGAATAGAATAGAATAGAAGATGGTGTGCTATGTTCTAT GTAGTGTTGTGTTTTACTATAGATCCAAAATAGGTGAATAGATAATAGAGAGCTGGAAATTATTAAGAGGGGAACACTTT TTAAATCAAATTTAACCGATTCGATCGGATTAAGCAACAAGGAAACATGAGCTACGGCACCTGTTGCTAATTGCTATGTC TCTCCGTAATTGTCTGAGAAATGTATAATTCCTGGTTAATGTGCAGTTCAACATCCTTAAACAATCAGTCAGGTTTAGTT TGATAAATTTGTTAAAAGCTAAGGATTAAATATATTTTTGGTCTATGACAATATCACATTCTTTTTAGAATTAGTTCTTT TATACTTCATTTTCGTCTCTATATTTAACAAAAATAGTGTTTTTAATCTTTTGTCATGGTGCTTTTAGGAACTTAGGTCA CATTACTTTAAAAGATGAGGGATCGAATCAGGACATTTTCTAAATCAGGGACTAAAATAAGAATTTGAGAACTATACTAG GACTAAGAACATATTTTTTCATCAAGTTAAAGAACATTTCTATTCTGATTGGTTTGTGATGAATCTATAGTAAGCCTAAC TTTAAAATTCCATGCCTGGATATGCTAGGCAGGCTATCTTTTAATATCAATATCATCATCATTAACTTCAGATAATGAAT GGAATAATGCATTTATACATGTAAATATCTATGATATTTTAGTGATAGGGTATATAAATGACTCAAATGTTTAAATTAGT GTGCTATGTTACGAAGTTTCTTTTTAGAAAAAAGCAATGTTATTTAGGTCCATCTATCTTTTAGGCCATTTGCTCCTGTC ATTCATAATCATTCTGTGGCTTATTTCCTTTGTTCATATCTAGCTTTACTAAGATAGGGTGTCTGGTTAAATATCAGACT TTGGAACCATTTTATCTGGATGTGGAGTTTTATTGCAATTTCATCCGTAAAGAAGATTTACAGGAAAAAGGAAATGTTGA AGTTGAATGCAGTATATTACGATCTGGTAGTCATATCCCCTATAAGAAAATGAAAAGCCTTTTAACCTCTGTAATCTAAG GAATGTATAGCTTGTTGAAAGAAACATTGTTGTCCTGTTGTGTTGTGCCTTGACTGCCGTCCCTTCTAATATAAGTTAGA GAAGTCTGGAGATTTTTATAATCATATAACAGATTAACAGATTTCCAAGGGTGCAGGGTGCCTAATTAATCACAATTTCT GAGTGCAAATTTTTTTTCTGATTGTGACCCATAATGGACATTTTACCCTTGTTAAAAGCAGTACATGCTATCTATCCATT GCTCAATGAATGGATTTCTGGCTTGTAACTGCAGAGGCACTAGCAGAAATAAATTATCAGCATCTTTTCATCTTTCGCTT AATGCAATGTGTGCTTAAATGATTATTTCATTTTGCATAAACTGCTGCTTAACTTGCCATTACAATGGATGCATGCTTAA TCTGTGAATTATGATTTACGTGTTCGATAGGTCTGGCTCCCCCAACATAGAAGATATTGAAGCCTTTTCTACAACCTATA GAGCAAAATTGGATGAAGCAGAACTTACCAAATCTGTTCCGGAGAATTTAACTTTGGAGGTACAATTTCAAGTATCTTAT TGGCATTTTATCTTATGTTGGAGTCTGGAGGGAGAGATATAACAGGAGATTGTCACGATGAACAATATTTGAGAGTGCAA ATTATTGAAGTCTAATAAATCCACATGAACCTTTGGATAATGTCTTCAAATTTTAGAGCAAATGAACCATGTTTTGCTAT GGAACTGATAATGATTTTGGTCTTTGGATAATGTTTTCCTTCTTGATTATGGTCAATGTCGCTTATTAAGTGTTCAATTA GCTTTTATATCTGAGATGTGTTCCTTCAGGTGTCTTCTCCTGGTGTGGAAAGAGTAGTTCGGATTCCAGATGACCTAGAC CGATTCAAGGACAGATCTATGTATGTGAGATATGCCATAGATGATGATGATTCCATGAATCCATCTGCAGAAGGTGATGG TGTGTTCAAGCTTGAATCCTTTGACTTGGATACAAAATATTGCACCTGGAGTTTAGCAGACGTGAGAGTTAACAGAGAGA AAGCAGGGAAAGGAAGACCACTGAATAAAAAGCAAAGAGAATGGCGTTTAAGCACTCCCTTTGATTCCTTACGTTTTGTA CGGTTGCACTCCGGCACTTGAGTAATTTATTTTCTCCGACAGTTGCTAGTTAGATCCCCATCTTTCGTCTGAGTGTGTGT GTATATGTAATGCACATAAGGAGCTGCATGTGTAGATCCTTGGGAGAACAGTTAGCACATAAATTAGTTAAGTTTTTCGC ACTTTGGAACTTGACTATCTCTTTGACTAATCGTTCTGTCATTTAGTGCTATTGTTCTAACCTGTTTATTTCATGGCAAG TAAAGGGTAGAAAACACATGCAGAGACGTGGAGACCATGGCAGTATGGAATGACAATGCTACACCTACAAGGGAAAACAT TTATGGCTAAAAACATTTCTTTCATCTGTGGTCTCTTGGACAAAAAAGGTTTAAAAAAATATTCCAAAGCAAACAATTTT CACCCCTTGATATCTATCAATTACTTTGCAAAGGAATTACATAGTCTATTATGGCTTTATGCCCTAGTTTTCACTATCAT CAGTCATTTATGTTCTGCAAAACTGGGCTTCCTTCTGAATGCATGGACCTTGTGAATATTTGCATTCTTACACATGGAGT TGATCCAAATGAAAAATCAAAAGCCTCATGGTGAGCGTTCCTAAGTTGTCTTTTGTTCGTCGTACTGGTAATTGTATCGC AAACTGTTGAACTTATAATGCTGTTTTTTTTTACCAATGTGTATGTGTTTGGGTTGAGGATATTCTACCGGACCTTATGC CGTTCGTAAATGTTGATTTGATGTCCTCCATGCCTTTGGTTTAATATTTATATTTATCAATAGCATTACTTTCAAAAATA TATTTATCAATAGCATTTAAAAAAAAACGCTAATAATCTATTATATTGTGGAAACATACAATCATCCTGAG
CDS sequence (LotjaGi1g1v0273900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGGTTAAAGCTTCAAGCCTGAAACCATGGCGAATTCCTTCACCGCCACTAATTAACATCACCACTTCGACTGC TACCACCTTCTATTTCTCTCCTCGCTCTTCAAAAAATTTCTCGTTTCCATTTTCAACCTTTCAAGTTCAACACACTCAGT TAAAGCCCCTAATTCTCCATGGCAAGAAGAGAAACTCCTCTGATTCCGAACCAGTTCTCGAACCCACCATCGTCCAAGAA GTATCAATGGATGAAGAAGAAGACGATGAATTCGATTACGAGGAACCACTGAACGACGAGGACGAGGACGGTGACGAGTA CTATGACGACGACGAACAAGAAGAAGAAGAGTTTGAGGATGAAGATGAGGATAGTGTGCCCTATGCAGGTGATGGGGGTT CAGGTGGTGGAATTTCCCTTGCCGGATCATGGTGGGATAAAAAGGCACTAGCTATTGCTAAAGAGGTTACTGAGTCTTTT GATGGTGATTTGCAAATTTATGCTTTTAGAACGCTGCTGCGTAACTCCGCCATTCAAGTTCGCATTGAGAAGCTTTCCAA CAAGTCTGGCTCCCCCAACATAGAAGATATTGAAGCCTTTTCTACAACCTATAGAGCAAAATTGGATGAAGCAGAACTTA CCAAATCTGTTCCGGAGAATTTAACTTTGGAGGTGTCTTCTCCTGGTGTGGAAAGAGTAGTTCGGATTCCAGATGACCTA GACCGATTCAAGGACAGATCTATGTATGTGAGATATGCCATAGATGATGATGATTCCATGAATCCATCTGCAGAAGGTGA TGGTGTGTTCAAGCTTGAATCCTTTGACTTGGATACAAAATATTGCACCTGGAGTTTAGCAGACGTGAGAGTTAACAGAG AGAAAGCAGGGAAAGGAAGACCACTGAATAAAAAGCAAAGAGAATGGCGTTTAAGCACTCCCTTTGATTCCTTACGTTTT GTACGGTTGCACTCCGGCACTTGA
Protein sequence (LotjaGi1g1v0273900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLVKASSLKPWRIPSPPLINITTSTATTFYFSPRSSKNFSFPFSTFQVQHTQLKPLILHGKKRNSSDSEPVLEPTIVQE VSMDEEEDDEFDYEEPLNDEDEDGDEYYDDDEQEEEEFEDEDEDSVPYAGDGGSGGGISLAGSWWDKKALAIAKEVTESF DGDLQIYAFRTLLRNSAIQVRIEKLSNKSGSPNIEDIEAFSTTYRAKLDEAELTKSVPENLTLEVSSPGVERVVRIPDDL DRFKDRSMYVRYAIDDDDSMNPSAEGDGVFKLESFDLDTKYCTWSLADVRVNREKAGKGRPLNKKQREWRLSTPFDSLRF VRLHSGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 326 | 290 | 1.6E-123 | – | |
| PANTHER | 37 | 326 | 290 | 1.6E-123 | – | |
| MobiDBLite | 61 | 133 | 73 | - | – | |
| MobiDBLite | 80 | 127 | 48 | - | – | |
| Hamap | 147 | 327 | 181 | 11.362 | ||
| SUPERFAMILY | 152 | 231 | 80 | 3.27E-7 | ||
| Pfam | 156 | 231 | 76 | 6.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosomal small subunit biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi1g1v0273900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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