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GO:0042254

Overview

Field Value
Namespace Biological process
Short description Ribosome biogenesis
Full defintion A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Subterm of

Relationships

The relationship of GO:0042254 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCma
WikipediaRibosome_biogenesis
PMID
Eukaryotic Ribosome Assembly and Nuclear Export.
Int Rev Cell Mol Biol. ; 319 (): 107–40.PMID: 26404467

Accurate translation of the genetic code into functional polypeptides is key to cellular growth and proliferation. This essential process is carried out by the ribosome, a ribonucleoprotein complex of remarkable size and intricacy. Although the structure of the mature ribosome has provided insight into the mechanism of translation, our knowledge regarding the assembly, quality control, and intracellular targeting of this molecular machine is still emerging. Assembly of the eukaryotic ribosome begins in the nucleolus and requires more than 350 conserved assembly factors, which transiently associate with the preribosome at specific maturation stages. After accomplishing their tasks, early-acting assembly factors are released, preparing preribosomes for nuclear export. Export competent preribosomal subunits are transported through nuclear pore complexes into the cytoplasm, where they undergo final maturation steps, which are closely connected to quality control, before engaging in translation. In this chapter, we focus on the final events that commit correctly assembled ribosomal subunits for translation.

Associated Lotus transcripts 67

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
PREDICTED: LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein-like [Glycine max] gi|356496398|ref|XP_003517055.1| 2
PREDICTED: ribosome maturation protein SBDS-like [Glycine max] gi|356552763|ref|XP_003544732.1| 1
PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Cicer arietinum] gi|502149927|ref|XP_004507713.1| 1
PREDICTED: NHP2-like protein 1-like [Cicer arietinum] gi|502087441|ref|XP_004488534.1| 2
PREDICTED: 60S acidic ribosomal protein P0-like [Cicer arietinum] gi|502097328|ref|XP_004490967.1| 1
H/ACA ribonucleoprotein complex non-core subunit NAF1 [Medicago truncatula] gi|358345105|ref|XP_003636623.1| 2
PREDICTED: LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein-like [Glycine max] gi|356496398|ref|XP_003517055.1| 2
PREDICTED: LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein-like [Glycine max] gi|356496398|ref|XP_003517055.1| 2
PREDICTED: mRNA turnover protein 4 homolog [Cicer arietinum] gi|502076993|ref|XP_004485517.1| 1
PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein-like [Cucumis sativus] gi|449468560|ref|XP_004151989.1| 3
PREDICTED: 60S acidic ribosomal protein P0-like [Glycine max] gi|356501137|ref|XP_003519385.1| 1
PREDICTED: NHP2-like protein 1-like [Cicer arietinum] gi|502087441|ref|XP_004488534.1| 2
PREDICTED: pescadillo homolog isoform X2 [Cicer arietinum] gi|502154817|ref|XP_004509849.1| 2
PREDICTED: pre-rRNA-processing protein TSR1 homolog [Glycine max] gi|356508752|ref|XP_003523118.1| 2
H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Theobroma cacao] gi|508719325|gb|EOY11222.1| 2
PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein-like [Cucumis sativus] gi|449468560|ref|XP_004151989.1| 3
PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] gi|356544500|ref|XP_003540688.1| 2
PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] gi|356544500|ref|XP_003540688.1| 2
PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max] gi|356551165|ref|XP_003543948.1| 1
PREDICTED: nucleolar complex protein 4 homolog [Glycine max] gi|356501033|ref|XP_003519333.1| 1
Nucleolar complex protein-like protein [Medicago truncatula] gi|357492085|ref|XP_003616331.1| 1
PREDICTED: pescadillo homolog [Glycine max] gi|356572972|ref|XP_003554639.1| 2
PREDICTED: pescadillo homolog isoform X2 [Cicer arietinum] gi|502166463|ref|XP_004513900.1| 2
PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Cicer arietinum] gi|502082945|ref|XP_004487320.1| 2
60S acidic ribosomal protein PO [Euphorbia esula] gi|6984134|gb|AAF34767.1|AF227622_1 1
PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] gi|356544500|ref|XP_003540688.1| 2
PREDICTED: 60S acidic ribosomal protein P0-like [Glycine max] gi|356501137|ref|XP_003519385.1| 1
PREDICTED: ribosome biogenesis protein BOP1 homolog [Glycine max] gi|356560725|ref|XP_003548639.1| 1
Pescadillo homolog; TAIR: AT5G14520.1 pescadillo-like protein; Swiss-Prot: sp|Q9LYK7|PESC_ARATH Pescadillo homolog; TrEMBL-Plants: tr|A0A151TB86|A0A151TB86_CAJCA Pescadillo homolog; Found in the gene: LotjaGi1g1v0026600 2
60S acidic ribosomal protein P0; TAIR: AT2G40010.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0; TrEMBL-Plants: tr|I3SXM4|I3SXM4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0079400 1
60S acidic ribosomal protein P0; TAIR: AT2G40010.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0; TrEMBL-Plants: tr|I3SER8|I3SER8_LOTJA 60S acidic ribosomal protein P0; Found in the gene: LotjaGi1g1v0079600 1
Nucleolar complex protein 4 like; TAIR: AT2G17250.1 CCAAT-binding factor; Swiss-Prot: sp|Q6NU91|NOC4B_XENLA Nucleolar complex protein 4 homolog B; TrEMBL-Plants: tr|I1MBW8|I1MBW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092700 1
Ribosome maturation protein SBDS; TAIR: AT1G43860.1 sequence-specific DNA binding transcription factor; Swiss-Prot: sp|P70122|SBDS_MOUSE Ribosome maturation protein SBDS; TrEMBL-Plants: tr|I3SB34|I3SB34_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0167500 1
Ribosomal protein l7ae; TAIR: AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3SXG0|I3SXG0_MEDTR Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Found in the gene: LotjaGi1g1v0200100 2
Pescadillo homolog; TAIR: AT5G14520.1 pescadillo-like protein; Swiss-Prot: sp|Q9LYK7|PESC_ARATH Pescadillo homolog; TrEMBL-Plants: tr|A0A151TB86|A0A151TB86_CAJCA Pescadillo homolog; Found in the gene: LotjaGi1g1v0390500 2
Pre-rRNA-processing protein TSR1 like; TAIR: AT1G42440.1 pre-rRNA-processing TSR1-like protein; Swiss-Prot: sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog; TrEMBL-Plants: tr|I1JSW0|I1JSW0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0435400 2
Pre-rRNA-processing protein TSR1 like; TAIR: AT1G42440.1 pre-rRNA-processing TSR1-like protein; Swiss-Prot: sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog; TrEMBL-Plants: tr|I1JSW0|I1JSW0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0435400 2
H/ACA ribonucleoprotein complex subunit 1-like protein 1; TAIR: AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; Swiss-Prot: sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; TrEMBL-Plants: tr|A0A072U1E4|A0A072U1E4_MEDTR Gar1/Naf1 RNA-binding region protein; Found in the gene: LotjaGi1g1v0642700_LC 2
H/ACA ribonucleoprotein complex subunit 1-like protein 1; TAIR: AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; Swiss-Prot: sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; TrEMBL-Plants: tr|A0A072U1E4|A0A072U1E4_MEDTR Gar1/Naf1 RNA-binding region protein; Found in the gene: LotjaGi1g1v0642700_LC 2
H/ACA ribonucleoprotein complex subunit 3-like protein; TAIR: AT2G20490.1 nucleolar RNA-binding Nop10p family protein; Swiss-Prot: sp|Q93XX8|NOP10_ARATH H/ACA ribonucleoprotein complex subunit 3-like protein; TrEMBL-Plants: tr|K7MYQ3|K7MYQ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0707600_LC 3
Ribosome biogenesis protein BMS1; TAIR: AT1G06720.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0756800 2
Ribosome biogenesis protein BMS1; TAIR: AT1G06720.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0756800 2
Ribosome biogenesis protein BMS1; TAIR: AT1G06720.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0756800 1
RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0126600 2
RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0126600 2
RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0126600 2
RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0126600 2
RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0193200 2
Ribosome biogenesis protein WDR12 homolog; TAIR: AT5G15550.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9LF27|WDR12_ARATH Ribosome biogenesis protein WDR12 homolog; TrEMBL-Plants: tr|I1LWS1|I1LWS1_SOYBN Ribosome biogenesis protein WDR12 homolog; Found in the gene: LotjaGi2g1v0265800 1
60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429700 2
60S ribosomal protein L7a; TAIR: AT2G47610.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P49692|RL7A1_ARATH 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429700 2
CCAAT/enhancer-binding protein zeta; TAIR: AT1G72440.1 CCAAT-binding factor; Swiss-Prot: sp|P53569|CEBPZ_MOUSE CCAAT/enhancer-binding protein zeta; TrEMBL-Plants: tr|V7ANZ2|V7ANZ2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0409600 1
H/ACA ribonucleoprotein complex non-core subunit NAF1; TAIR: AT1G03530.1 nuclear assembly factor 1; Swiss-Prot: sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1; TrEMBL-Plants: tr|A0A1J7HBW8|A0A1J7HBW8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0441300 5
H/ACA ribonucleoprotein complex non-core subunit NAF1; TAIR: AT1G03530.1 nuclear assembly factor 1; Swiss-Prot: sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1; TrEMBL-Plants: tr|K7LU49|K7LU49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0458700 5
Ribosome biogenesis protein BMS1; TAIR: AT1G06720.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0501300 1
Ribosome biogenesis protein BMS1; TAIR: AT1G06720.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0501300 1
60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0525500 2
60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0525800 2
60S acidic ribosomal protein P0; TAIR: AT2G40010.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0; TrEMBL-Plants: tr|I3SXM4|I3SXM4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0225000 1
60S acidic ribosomal protein P0; TAIR: AT2G40010.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0; TrEMBL-Plants: tr|I3SXM4|I3SXM4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0225000 1
Ribosome biogenesis regulatory protein like; TAIR: AT2G37990.1 ribosome biogenesis regulatory protein (RRS1) family protein; Swiss-Prot: sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homolog; TrEMBL-Plants: tr|I3S802|I3S802_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0270000 2
50S ribosomal protein L10; TAIR: AT5G13510.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|O80362|RK10_TOBAC 50S ribosomal protein L10, chloroplastic; TrEMBL-Plants: tr|A0A1J7HDS5|A0A1J7HDS5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0285600 1
Ribosome maturation protein SBDS; TAIR: AT1G43860.1 sequence-specific DNA binding transcription factor; Swiss-Prot: sp|P70122|SBDS_MOUSE Ribosome maturation protein SBDS; TrEMBL-Plants: tr|I3SB34|I3SB34_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0306500 1
Ribosomal protein l7ae; TAIR: AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3T354|I3T354_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0162200 2
Ribosomal protein l7ae; TAIR: AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3T354|I3T354_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0162200 2
60S acidic ribosomal protein P0; TAIR: AT1G25260.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|A4FV84|MRT4_BOVIN mRNA turnover protein 4 homolog; TrEMBL-Plants: tr|I3S103|I3S103_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0358000 1
Ribosome biogenesis protein BOP1 homolog; TAIR: AT2G40360.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|F4IH25|BOP1_ARATH Ribosome biogenesis protein BOP1 homolog; TrEMBL-Plants: tr|K7MED3|K7MED3_SOYBN Ribosome biogenesis protein BOP1 homolog; Found in the gene: LotjaGi6g1v0363400 1

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Biological process Ribosome biogenesis 1 1.49