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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0274200 |
| Transcript ID | LotjaGi1g1v0274200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G70260.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260; TrEMBL-Plants: tr|A0A0B2QPH5|A0A0B2QPH5_GLYSO WAT1-related protein; Found in the gene: LotjaGi1g1v0274200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67211293..67214031) extracted from Lotus japonicus Gifu genome v1.2.
TTAAAAACTCCCTAAGACGTCATCATTAATTGGTCCCTTGTTTAAGAACTTGGGACACTCGAGTTGCAGCTTCTCCTCCA AAAGTATCTCCCCCATTCTTTGAAGGGTTACCCGCATCAAAATGCATGGCCCCATCTCTTCTCTTCCTTTCCCTTTGCTT CTTATATTTGGAGCACAAATTCAATGATCCACCTCATTACATTCAGAGACAAGAATCTCATTTACTTAATTTCTTGGTGC TTGTACTAGCTCCAAAACTTGTGGTGCGCACACATAGCAGATAAAGACACTGCTATCCATACCACCATATATTTAACATA CTAGCACTTATCTAAAGAAGGAAAACTCAATGGAGGCTAAGATTAAGATGATGTCAGAGGTGCTTCCATTCATAATCATG GTGATTATGGAAGGCTGCACCATAGGACTAACAATATTTACAAAAACTGCAATAACTAATGGAATGAGCCCATTTGTGTT CATTGTTTCTACAAATGCTCTGGCCACTATAATTCTGTTTCCTTGTTCTTTTTTATCACACCACAAGGACAGGTCTATAT ATCTCTCTTTCACCACTGTGTGTGTGTTTGTGTTGCTAGCTAGTTATCTGCTGAGTGATGTTTTTTGCATGGACGGTTAT TTCTAGTCCTGATCTTCATCATATTCTTCTTTTTTCAGAAAGGAGAGTCCACCTTTTACTTTCTCTTTGTTCATGCGATT CTTGGTCCTGGGTTTTACAGGGTATACAATCTTTCTCCTACAAGAGACCCTTTTAATAAAGTTCAAAGCTTTTTTATGTC CTTCAAATATAGTAATTAAGCCTCAGAATTCAAGATTCTATTTGGTTTTAGATTATCCAAACCCAAGTTTTGATACATAT GCAACGAAGAATTGTAAGTGATTGAGTGGTCTTGCTACCACGATGTACTGAAATACAACCCTTGTTGCTTCTATTCGTCC CTAATTTGTTTTAAAAAAAATATTTGTATTCATATTTGTAATTTTATTTATTTTCCATTGGTGGACTTTGCAGAATAACC ATGACTCAGACATTTTTATACCTGGGTCTAAGCTACAGTTCTCCAATACTTGTATGTGCCATGGGCCACTTGATCCCAAC ATTCAATTTCCTGATCTCTGTCATTCTCAGGTTCCTGAAAACTTTCATAGAAAAATTGTTGTCCACATTTGACATGTAGA TTATTGATACTCAATTTAATTGATATTGATTTTTTCAGGAAGACAAAGTTGAATTTGAGAAGCTCTACTACACAAGTCCA ATTGATTGGTATCATGGTATCAATAATGGGAGCAGTGCTAGCTGAATTCTTCAAGGGCCCACTTATAAGACCCTCTTCTC ACCACCTTAAACACACTAAGCAACTTTTTGTCTTCTCCTCAACACCAGAGTTTTGGGTTCTTGGTGGCATTTTGCTTGCT GCAGCTTCTTTTTCAACAGCAATTTGGAACTTCATCCAGGTAATATTCTTGAGCCCCTTTTCATATACTTGTTCTATTCT TAAAAATCAAAAGATCCTGTTGAATCTGTAAGGTGATTGATTAAAGTTTGTCCTGTTCTACTAGAAAGAAACTGTTCAGC AATATTATCCAGAACCAATGAAGGTGGTTTCTTATTATTGCTTGCTTGGAACGATCCTTAGTGCAATAGTCTCATGGATA GTGGAGAGAGATGCAAATGCTTGGAAGCTAAAACGTGACATGGACCTCATTCTCATTGTTCTAACCGTAAGTTCAACATA CTTTAATATTATTCCGATACATATTATTATGATTTTGTTAAGAAAAATTTGATTCGCAGATTAAAAGAGTTTCTTGCAAA ATTATTAAGATGTATAAGGATCATATTGTAAATATTACGTTTTATAACAAGTAAAAACATGATTTATGGGAGGATCAGAT TTGAACATGTTTATTACATAGGACCATTACTATATACATATGGCTATGCTGATGATATGAGAAATATGTAATGTTATAGG CACTATTTGGGGGTGTGATTCGTCCTAATATTCAAGTGTGGTTCACTCGTATGAAGGGTCCACTTTATGTGCCACTATTC AAGCCCTTTGGTGTTGCCTTTGCCACCACTTTTGGAGTTTGCTTCTTTCCTAACAGTCTTCATTATGGAAGGTAATTGGA TTCTCTTTCACATATATGTTGACTTGTAAAGTAATTAATTATGTATCAGAATTTGAGTTCACTTGATTAATTTGTTTGCA TGTCCTATTCATATACAAAGTTTTTATCTGCTGAAAGAAAGAAAAACTACATATCTTGCAGTGTGATAGGAGCAGCTATA CTTGGAATGGGGTATTATACAGTATTTTATGGAGAATTCAAAGGAGATGATGAAGAAGAGAACAGCTGTGACTATGACGA AAGCTCAGATTCTTTGGACAAGAAGATACCTCTGTTGCAAGAAAAGATGGAAGTGTAAATAATAAATTAAAAGAAACTAT ACATTGTTGACCAAAAAAAAGAAGAAGCTAATAGCCTAATACATTTGTTTGCTATCGAGTGTGATATGACTCCATTTCTT TTTCATCTAATTTTCACACACTTAGTTAATTCTGTCTGGATTTATTGGTTTTTTTTCATCTTTTCCTATTAAATCATCCA TCATATCAGCTATGTGTCCACACTTAATTCTTAAATGTTTCATTTCATGTTCCACCAATAAAATTGTCTCATTAATTAAA AATTGCTTAAATAAAGTTA
CDS sequence (LotjaGi1g1v0274200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCTAAGATTAAGATGATGTCAGAGGTGCTTCCATTCATAATCATGGTGATTATGGAAGGCTGCACCATAGGACT AACAATATTTACAAAAACTGCAATAACTAATGGAATGAGCCCATTTGTGTTCATTGTTTCTACAAATGCTCTGGCCACTA TAATTCTGTTTCCTTGTTCTTTTTTATCACACCACAAGGACAGAAAGGAGAGTCCACCTTTTACTTTCTCTTTGTTCATG CGATTCTTGGTCCTGGGTTTTACAGGAATAACCATGACTCAGACATTTTTATACCTGGGTCTAAGCTACAGTTCTCCAAT ACTTGTATGTGCCATGGGCCACTTGATCCCAACATTCAATTTCCTGATCTCTGTCATTCTCAGGAAGACAAAGTTGAATT TGAGAAGCTCTACTACACAAGTCCAATTGATTGGTATCATGGTATCAATAATGGGAGCAGTGCTAGCTGAATTCTTCAAG GGCCCACTTATAAGACCCTCTTCTCACCACCTTAAACACACTAAGCAACTTTTTGTCTTCTCCTCAACACCAGAGTTTTG GGTTCTTGGTGGCATTTTGCTTGCTGCAGCTTCTTTTTCAACAGCAATTTGGAACTTCATCCAGAAAGAAACTGTTCAGC AATATTATCCAGAACCAATGAAGGTGGTTTCTTATTATTGCTTGCTTGGAACGATCCTTAGTGCAATAGTCTCATGGATA GTGGAGAGAGATGCAAATGCTTGGAAGCTAAAACGTGACATGGACCTCATTCTCATTGTTCTAACCGCACTATTTGGGGG TGTGATTCGTCCTAATATTCAAGTGTGGTTCACTCGTATGAAGGGTCCACTTTATGTGCCACTATTCAAGCCCTTTGGTG TTGCCTTTGCCACCACTTTTGGAGTTTGCTTCTTTCCTAACAGTCTTCATTATGGAAGTGTGATAGGAGCAGCTATACTT GGAATGGGGTATTATACAGTATTTTATGGAGAATTCAAAGGAGATGATGAAGAAGAGAACAGCTGTGACTATGACGAAAG CTCAGATTCTTTGGACAAGAAGATACCTCTGTTGCAAGAAAAGATGGAAGTGTAA
Protein sequence (LotjaGi1g1v0274200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAKIKMMSEVLPFIIMVIMEGCTIGLTIFTKTAITNGMSPFVFIVSTNALATIILFPCSFLSHHKDRKESPPFTFSLFM RFLVLGFTGITMTQTFLYLGLSYSSPILVCAMGHLIPTFNFLISVILRKTKLNLRSSTTQVQLIGIMVSIMGAVLAEFFK GPLIRPSSHHLKHTKQLFVFSSTPEFWVLGGILLAAASFSTAIWNFIQKETVQQYYPEPMKVVSYYCLLGTILSAIVSWI VERDANAWKLKRDMDLILIVLTALFGGVIRPNIQVWFTRMKGPLYVPLFKPFGVAFATTFGVCFFPNSLHYGSVIGAAIL GMGYYTVFYGEFKGDDEEENSCDYDESSDSLDKKIPLLQEKMEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 6 | 361 | 356 | 2.3E-155 | – | |
| PANTHER | 6 | 361 | 356 | 2.3E-155 | ||
| TMHMM | 11 | 30 | 20 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| Pfam | 15 | 155 | 141 | 9.3E-9 | ||
| Phobius | 31 | 41 | 11 | - | – | |
| TMHMM | 42 | 64 | 23 | - | – | |
| Phobius | 42 | 62 | 21 | - | – | |
| SUPERFAMILY | 50 | 158 | 109 | 8.24E-7 | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 99 | 26 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 100 | 104 | 5 | - | – | |
| Phobius | 105 | 127 | 23 | - | – | |
| TMHMM | 108 | 127 | 20 | - | – | |
| Phobius | 128 | 138 | 11 | - | – | |
| Phobius | 139 | 159 | 21 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 160 | 185 | 26 | - | – | |
| TMHMM | 185 | 207 | 23 | - | – | |
| Phobius | 186 | 207 | 22 | - | – | |
| Pfam | 190 | 328 | 139 | 8.2E-9 | ||
| Phobius | 208 | 222 | 15 | - | – | |
| TMHMM | 222 | 241 | 20 | - | – | |
| Phobius | 223 | 241 | 19 | - | – | |
| Phobius | 242 | 255 | 14 | - | – | |
| TMHMM | 254 | 273 | 20 | - | – | |
| Phobius | 256 | 273 | 18 | - | – | |
| Phobius | 274 | 284 | 11 | - | – | |
| TMHMM | 283 | 305 | 23 | - | – | |
| Phobius | 285 | 305 | 21 | - | – | |
| Phobius | 306 | 310 | 5 | - | – | |
| Phobius | 311 | 330 | 20 | - | – | |
| TMHMM | 312 | 329 | 18 | - | – | |
| Phobius | 331 | 364 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0274200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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