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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0276400 |
| Transcript ID | LotjaGi1g1v0276400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor, putative; TAIR: AT4G27950.1 cytokinin response factor 4; Swiss-Prot: sp|Q9SUE3|CRF4_ARATH Ethylene-responsive transcription factor CRF4; TrEMBL-Plants: tr|G7J693|G7J693_MEDTR Ethylene response factor; Found in the gene: LotjaGi1g1v0276400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67695103..67697195) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGGTCTGCTCAGCCACTGAACTCTTGTTCCTAAGTTCTCTTCTCACCTCTCTTCAATAGCACCACCAACAACACTT CCTCTTGACCTCTATCAGTAGTACCTTTCATCTTGCAGAATCTGTGCCTTCTATTCTCCTCAACTTTGAATCCAAAGATT GATTTGGTTTCCTTTTCCATTTTCAAGGGAGGAGGAAGTTTCAACGAAAGTCTCCTCAATCAAACTTCTCTATCTGCAAT CAATCACCAGCATCCCAATATATCTTTCTTACCCATATGACATTAAAAGTTCTTCTTTTCTCTTTATTCCTCTCACTCTC TACCTTCTTCCGTTTTTAATATCTCCAGCGATTTTCTTTCCCCTTTTTTTTCACTCTTTTTCCCCTTTCAGTACCCACCT TTTCAATTCTTTTGGAAGATAAAAAACCCCATCATAAAAGCCCATCCTTGTGCCTCACGATTCTCTCTCTTTTTATATTC CAAAACTTGGGTCTATTTGTTTCTCCAGGCACACTGTGTTTCTTTACCAAAACAGAACACTCAACACAACACAACACATG ATGGAAATGGAAATGGAACAGAGTTTCCTATGCAAATACACAGAGCACCACAGCATCACCAAGAAGCTTGTGAAGGGAAA AACCATGGAGCCCAGAGTGGTGAGCATATCTGTCACCGACCCAGACGCCACCGACTCCTCCAGCGACGAAGAAGGAGGAG GAAGCAGAGGAGAGAGGTTCTTCCGCCGGAGAACAAAGCGCTATGTCAACAGGATCGAGATTGAAACCACCGCCACCGTT TCAAACCCACGGAAAAGGCCAGCCGTGAAAACACCGTCATCCCACCGGCGGCCGGCGAAGGTTCCGGCGGTTAACGGCGA TGGGAGGAAGTTCCGCGGTGTCCGGCAGCGGCCGTGGGGGAAATGGGCAGCGGAGATTCGAGATCCGGCGAAGAGAGTCC GCCTTTGGCTTGGCACCTACAACACGGCGGAGGAGGCCGCCATGGTGTACGACAATGCCGCGATTCGACTCCGTGGACCT GACGCGCTGACGAACTTCGTCACGCCGCCGCAGAAGGAAAATGAAGATGCTCCGCCGCTTCCGGTGGCTGTGAAACCTGA AATGAAGGTCACCGTCGACGCAGAAGCCTCGTCGAGTTACGACTCCGGCGACGACCACCGGTGTCGCAACCTCTCGTCTC CAACCTCAGTCCTCCATTTCAGAACCAACTCGACCGAGTCACAAAAACCGGTCGAACCAGAAGATACAACAACCGAACCG GAATCAGCTTCATTTTCTGGTTCAGGGGTTTTGTTCAGTGAGTACCAAAGCCAAAGCCAAGGTGAAACGACATCATTGTT TGATGAAACGACAATGGATGTCACGATTCCTTCATGGGATGATGTTTTCAACTACCAAGCCACTGATTACCCTCTTCTCT TTGAAGAAGAACCAGCACAGATTTTCAGTGACACGACGCCGTTTGGTGGTTTAGATGAAGATTTCTGCAGTGATAGCATT TTCCTTGCTGATTCTCTCATAGACTTTGATATAGCATGCCCTCCTCCTCCCTCCAACTCATGCCAGGCGGATGATGATTT CTTTCAAGACATTTGTTTCGGCTCCGATCCTCTGGTCGCACTCTGAAACCCAGAAGCTACTCACAACAATGCAGCCGTCG CTTCTCGGCAAATTTTGGTTCACGGGAAAAATTAAAATAAATTAGTAGTTTTATTTATTTATTTATTTGCATTTTTGTTT ATTTTTTTGGATACTCCGTTACGAATAGGTAATGGAGTAGCGTTGAGTGAAATTTTGTTTTTACATTTTAGTAATAATAG TATAATATTACCATGTCCTATAATTAGGATGGTTTTGTTTGAGATGAGAGATGTAATGTATATTGTTCAGGTTAATGAAC TAAATTTTAATAGTACTATGAGAGTTATGTTCAATTTTTCGAAACTAGTTATGTCCAATTTGATTTGCTCTTGTTTTGGA GCCACTATTTTGGTCCAAATGACACTGCTATACATCAACCTCAACCACAAGCAAAATGATTTGCATTTGTTGAAGAAAAA ACAGGAAAAAGGT
CDS sequence (LotjaGi1g1v0276400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAAATGGAAATGGAACAGAGTTTCCTATGCAAATACACAGAGCACCACAGCATCACCAAGAAGCTTGTGAAGGG AAAAACCATGGAGCCCAGAGTGGTGAGCATATCTGTCACCGACCCAGACGCCACCGACTCCTCCAGCGACGAAGAAGGAG GAGGAAGCAGAGGAGAGAGGTTCTTCCGCCGGAGAACAAAGCGCTATGTCAACAGGATCGAGATTGAAACCACCGCCACC GTTTCAAACCCACGGAAAAGGCCAGCCGTGAAAACACCGTCATCCCACCGGCGGCCGGCGAAGGTTCCGGCGGTTAACGG CGATGGGAGGAAGTTCCGCGGTGTCCGGCAGCGGCCGTGGGGGAAATGGGCAGCGGAGATTCGAGATCCGGCGAAGAGAG TCCGCCTTTGGCTTGGCACCTACAACACGGCGGAGGAGGCCGCCATGGTGTACGACAATGCCGCGATTCGACTCCGTGGA CCTGACGCGCTGACGAACTTCGTCACGCCGCCGCAGAAGGAAAATGAAGATGCTCCGCCGCTTCCGGTGGCTGTGAAACC TGAAATGAAGGTCACCGTCGACGCAGAAGCCTCGTCGAGTTACGACTCCGGCGACGACCACCGGTGTCGCAACCTCTCGT CTCCAACCTCAGTCCTCCATTTCAGAACCAACTCGACCGAGTCACAAAAACCGGTCGAACCAGAAGATACAACAACCGAA CCGGAATCAGCTTCATTTTCTGGTTCAGGGGTTTTGTTCAGTGAGTACCAAAGCCAAAGCCAAGGTGAAACGACATCATT GTTTGATGAAACGACAATGGATGTCACGATTCCTTCATGGGATGATGTTTTCAACTACCAAGCCACTGATTACCCTCTTC TCTTTGAAGAAGAACCAGCACAGATTTTCAGTGACACGACGCCGTTTGGTGGTTTAGATGAAGATTTCTGCAGTGATAGC ATTTTCCTTGCTGATTCTCTCATAGACTTTGATATAGCATGCCCTCCTCCTCCCTCCAACTCATGCCAGGCGGATGATGA TTTCTTTCAAGACATTTGTTTCGGCTCCGATCCTCTGGTCGCACTCTGA
Protein sequence (LotjaGi1g1v0276400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEMEMEQSFLCKYTEHHSITKKLVKGKTMEPRVVSISVTDPDATDSSSDEEGGGSRGERFFRRRTKRYVNRIEIETTAT VSNPRKRPAVKTPSSHRRPAKVPAVNGDGRKFRGVRQRPWGKWAAEIRDPAKRVRLWLGTYNTAEEAAMVYDNAAIRLRG PDALTNFVTPPQKENEDAPPLPVAVKPEMKVTVDAEASSSYDSGDDHRCRNLSSPTSVLHFRTNSTESQKPVEPEDTTTE PESASFSGSGVLFSEYQSQSQGETTSLFDETTMDVTIPSWDDVFNYQATDYPLLFEEEPAQIFSDTTPFGGLDEDFCSDS IFLADSLIDFDIACPPPPSNSCQADDDFFQDICFGSDPLVAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 360 | 354 | 7.9E-77 | – | |
| PANTHER | 7 | 360 | 354 | 7.9E-77 | – | |
| MobiDBLite | 36 | 61 | 26 | - | – | |
| MobiDBLite | 80 | 113 | 34 | - | – | |
| Gene3D | 110 | 169 | 60 | 1.0E-29 | ||
| Pfam | 111 | 160 | 50 | 5.5E-12 | ||
| ProSiteProfiles | 111 | 168 | 58 | 23.341 | ||
| CDD | 111 | 167 | 57 | 1.42666E-33 | ||
| SUPERFAMILY | 111 | 168 | 58 | 3.47E-21 | ||
| SMART | 111 | 174 | 64 | 4.4E-38 | ||
| PRINTS | 112 | 123 | 12 | 8.4E-10 | ||
| PRINTS | 134 | 150 | 17 | 8.4E-10 | ||
| MobiDBLite | 198 | 248 | 51 | - | – | |
| MobiDBLite | 210 | 248 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0276400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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