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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0281000 |
Transcript ID | LotjaGi1g1v0281000.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Polypyrimidine tract-binding-like protein; TAIR: AT5G53180.4 polypyrimidine tract-binding protein 2; Swiss-Prot: sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2; TrEMBL-Plants: tr|K7KLZ3|K7KLZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0281000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68514280..68518763) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACGCCTTGTTAGCATTGATGTTTTGCACTTGGTAAGCAGTTGCATGTGTATATTAGTTATATGCTAACACTGTTAT GGTGAGGATGCTGGTCACTTAGTTTTGTTATTAGGTTTTTCTTTGTCAGGCTATGGAAAAGTTGTTGACATGTATGTAAA TGAATCAGCAGGCCCATGTCAAGGCAATATCTTCAATGGCAGCTTAGTGCTTTGGGAGAAATAGCGCTTGTGTGTTTGTC TCCTTTTCTCCTTTCCTTAACACTACCTCTTTCTTCCCTATTCTCTCCCTAAACTCCTGCCATTCTTGTAGTTTAGGATG TTACCATTCTTTTTTCATTTTTGCATCCGTGCTTTATTGACTCATCATCTGCATTTTACTTTTACCTAGATTTAGTCACC AAATTCTGTGCTATGCAGTTTTTTTTGGTGTTCCAACTATTGTTTGGCTGTTTTAGATATTTTTAAAGTCTTATCAGATA ATAGTAGGCTAAGTTCCCTTCTAACCTTGGCAATGGAATGCTGAGTTTTCGCATAATTTATAGTTGAGGAGGTCATTTAC TCGCAAATCCTTTGTTTAAAACTTTGTATCAACTAATCAAGCATTGAAGTGAATGATACCATTACCTTCAAATTCTTATA AGTATTATTAGAGAATACAGATATATATTCTTGGCAGTTATTCATCTAAGAAAACTGTGATTTGGATTACATCAGTTGGA TAAACTATACCCCCCCCCCCCCCCCCCAATTTTTGCAGTTAAAGAGAAAACTGTTGCTATTGTTTTGATAGTTTATTGAC TTTTAATCTTGCTCAGTGCTTACAAGTTATAATATTTTAGTTCCTCTGACGCTAATGTATTCAACAAGAGCATTTTTCTA TTAGCATTCCAAGAGATATATTCTGAAATTTTAGACTTGTTAGTGCTCCCACTTTTCTATTGTATACAACTTTAGAAGGC ACAAGACACTGTTCATTTTGTGCTACAGATTTATCTTAGTAAATATCATCTTGAAAGTATATTGTTTACTCATGCAGGTC TTTTCGGCCTTTGGATTTGTGCATAAGATTACAACATTTGAGAAGACAGCAGGATTCCAGGTTTAGTGATAATCATCCCT TGTTTTTTATTCCCTTATTTAATCTAATGAGCACAACCTTATTCTATATAAAACTGTGTAGGCACTGGTGCAATTCTCTG ATGCAGAGACTGCCACAGCTGCAAAGGATGCTTTGGATGGAAGAAACATACCCAGGTAACAATTATATATTTATATTGTT TGACAATGTTTTTAGTTTACTGCTGTGGATCATATGATGGTCTAGTGTGGTTCATACTACATACGTTCTTAGATGGGTTA ACTGTCAGCGGATTTGCTGTTGTATATTCACTCTTCCGCAGTTCTTTGAGTTTTTACATTTAACTTAAGATGGAGTTTAT AGACTTTAACAATTATATTATGTTTTACAATGTTTTTAGTTTACTGCTGTGGATCATATGATGGTCTAGTGTGGTGCATA TGTTCTCATATGGGTCAACTACCAACAGATTTACTGTTGCGTACTTTTGTACATTCACACTTCTTCAGTTCTTTGAGTTT TTACAATTAACTTAATATGGACTTTATAAACATTGTTTTTTGCACTTGATAGCAATTCTATGGATCGTTGAATATAGCAA ATATTATAAGCTACATAATGTCAACCGGATCTTCTTGAATAAATGAATTATAAAGTGCTAAGTTTGAATCAGACTGCAAA ATGCAAATTGGTTGTGATTGGAACATTAATAATTTCATTTTATTTCTCAATTTTTGTTATTTCTGATCATTGATCCTTAA TTTCACCCTGGTATCAGCTATCTGCTCCCTGAGCATGTAGGACCATGTACACTCAGGATCACATATTCTGGACATTCAGA TTTAACTGTTAAGTTTCAAAGCCACAGAAGCAGGTATTGCTTATTTCTTTTGTATGTCTTGCTTATTCGAAACCAAGTTT TGGCAGAACTTTTTATTTTATGTGCCTATAGGCTATAGTATATTCTTTCCTTATCCTGTTGGTTTTTGGTTTATTCCTTG TTTTGTATATTGGTTCTATATCTCACCCTTCATATAACCTTTTATCCCTATTTCGTCCAATGATATGATTTTTTCGATTG GTTACTTTTTCTTGCTCCAGAGACTATACAAATCCTTATCTTCCTGTTGCTCAATCAGCCATGGATGGAAACGGACAGGT AATATTTTGACTATTAAGATCTATGTGTTAAGTATCAGCATGACATCTATTGTTACCTGCTTGTTTGTACATTCAAGCCT TCTAAATTGCTTGTTTTAACTTGAATGCTTACTTCATGGCATCATGCACATCATTTAGGTTTATGCCTTACTGTCACGGG TTTCCTTTGCATGCTGATTTGCTTATCGAGTTTTTTTCCCCTGTTTAAAAATTCATTTATAATTTTTGCAGGTCATGGTT GGTTTGGATGGTAAAAAACTGGAGACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATT GGATGTCTTACATATGGTACTTTAATCTTCACAGCCCATTTTTTCTTTATTGATTAACATATGGTACTTTAATCTTCACA GCCCATTTTTTCTTTATTGATTAACAATACTGTTTAGTTAATAATATCCTGCCTTCTTTTTTCTTTCTTTTGTGCCTCTC TGTAGGTATTCTCTGCTTTTGGACCTATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGATTCAA TATCCAGGTTAGGTTCTTTGAAAAAATTTCCTCATCATTGCTTGGATAGTTAGATATATTATGTTTGTACTTCCGAATGG TATTTGTGCAAACTGGGTGGGTATCAATTGTTTTCCATGTCTCTCAGTTTTAAACATTACATGTGCGTCTATGTAGCCTG ATTCTATGAAAATCAAGCATTTATGGTTTCAACTTACAAATTGGTGAGGAAAATGGCAAGTTTTACTGCACAAATGTCCA TTGCTGAGATTGATTTATTGATTCTGTATAGAAATATTGAAGAAAGATACTTCTAGCTGCATCTTCTTGTTCTTTTGAAC TTCCCTTTAGATTCTGTAGATATGATTGTTCTCTTAAGGAGTATGTGTCTGTTTCTTGCTGGGAATCTCCTCAGTAGGGA ATATGATTATATTTGATTGGTATAATAATGATGATTCAAGTGCAATATGCATGCATTTTTATGTCAGTGACCCAGTGAGT AAAACATGGGGGATTTTGACTTTATCAATAGTAGAAAGCTTTTTAACGGCCTTGTTTTGTTTTATACTATCATTATAAGC TTGAGAACTGAGATAGTGATATGCCATGGGCTTGCAGATACTCAGACAGCTATTGTGGCTAAGGAAGCCTTGGAAGGACA CTGCATTTACGATGGAGGCTTTTGCAAGCTTCACATCTCATATTCACGTCACACAGATCTTAGTATAAAGGTAAACAATC CTATCTAGAGTGAGGGTTGATCTTACTATAAATGCTTGAAAGAGCATATGATTTGGAGATGTCTTAACTCTTAAACCAAT ATGATAAAAGTAAAACAACGGTCCAGTTGTTATACTTATATGAGCAAACAAAGCCAATTCTCTTTGTTCATGGATATACT TAGTCATATATACCCAAAACTTAAGAATCTAGTTTTGGAGTTTGGCTTTCCTTTCTGAGATGATCACTGAAAATCCTTCA ACTGAAGATCAACAGGAATCCCCTCATTATCATATATCTCTGTCACTCGCAGCTTTCTTATGGAATCTCGAGTACTATAA TTACAAAAAATAGATCAACAGGAATCCCCTCATTATCATATATCTCTGTCACTCGCAGCTTTCTTATGGAATCTCGAGTA CTATAATTACAAAAAATACATTATACCGGTCTCATAAAATAAAATTATGATTTGCTGTTCAGTATTATATTTTCTTTTTT ATGCTGGGACTACATTTATCGTAGACTGTAAAATCATTTTTTATGGTTGCTGCTGGTTGGAACCTATTTGTCTCTTGAAA GAATTGCACTTATATTATAACTTCAATTGAACTTTAATTTCAAGGACCATTTTGTGTAATTACAGGTCAATAATGATAGA AGTAGAGACTACACCATTCCCACTACACCTGTTGTGAACACACAGCCCTCAATTTTAGGGCAACAACCTGGTCCTTTGGT GGGTCCTGCTCAGCAATACAATGGGTCTCAGTATACTCCAATTTCTTCACAGTCCCTGACACCTCAATCCCAGGCTGGGT GGGGAGCACCAGCACAGTCTATGCCAATGCAGATGCACAATAATATGTATGTTCCACCTGGAACTATGCCTCCACAAATG GCCCCTGCAATGCAATTTCCAAGTCACAGCTCCCGACAACCTACGGGCTCATTGCCACCATATGGATCCGGTCGCCCTCA ATAG
CDS sequence (LotjaGi1g1v0281000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGCCTTGTTAGCATTGATGTTTTGCACTTGCAGGCCCATGTCAAGGCAATATCTTCAATGGCAGCTTAGTGCTTT GGGAGAAATAGCGCTTGTCTTTTCGGCCTTTGGATTTGTGCATAAGATTACAACATTTGAGAAGACAGCAGGATTCCAGG CACTGGTGCAATTCTCTGATGCAGAGACTGCCACAGCTGCAAAGGATGCTTTGGATGGAAGAAACATACCCAGCTATCTG CTCCCTGAGCATGTAGGACCATGTACACTCAGGATCACATATTCTGGACATTCAGATTTAACTGTTAAGTTTCAAAGCCA CAGAAGCAGAGACTATACAAATCCTTATCTTCCTGTTGCTCAATCAGCCATGGATGGAAACGGACAGGTCATGGTTGGTT TGGATGGTAAAAAACTGGAGACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGAT GTCTTACATATGGTATTCTCTGCTTTTGGACCTATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCT GATTCAATATCCAGATACTCAGACAGCTATTGTGGCTAAGGAAGCCTTGGAAGGACACTGCATTTACGATGGAGGCTTTT GCAAGCTTCACATCTCATATTCACGTCACACAGATCTTAGTATAAAGGTCAATAATGATAGAAGTAGAGACTACACCATT CCCACTACACCTGTTGTGAACACACAGCCCTCAATTTTAGGGCAACAACCTGGTCCTTTGGTGGGTCCTGCTCAGCAATA CAATGGGTCTCAGTATACTCCAATTTCTTCACAGTCCCTGACACCTCAATCCCAGGCTGGGTGGGGAGCACCAGCACAGT CTATGCCAATGCAGATGCACAATAATATGTATGTTCCACCTGGAACTATGCCTCCACAAATGGCCCCTGCAATGCAATTT CCAAGTCACAGCTCCCGACAACCTACGGGCTCATTGCCACCATATGGATCCGGTCGCCCTCAATAG
Protein sequence (LotjaGi1g1v0281000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHALLALMFCTCRPMSRQYLQWQLSALGEIALVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDALDGRNIPSYL LPEHVGPCTLRITYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAMDGNGQVMVGLDGKKLETESNVLLASIENMQYAVTLD VLHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAIVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTI PTTPVVNTQPSILGQQPGPLVGPAQQYNGSQYTPISSQSLTPQSQAGWGAPAQSMPMQMHNNMYVPPGTMPPQMAPAMQF PSHSSRQPTGSLPPYGSGRPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 17 | 17 | - | – | |
Phobius | 1 | 2 | 2 | - | – | |
Phobius | 3 | 12 | 10 | - | – | |
Phobius | 13 | 17 | 5 | - | – | |
Phobius | 18 | 341 | 324 | - | – | |
Gene3D | 27 | 122 | 96 | 1.2E-23 | ||
SUPERFAMILY | 30 | 118 | 89 | 5.43E-9 | ||
Pfam | 30 | 79 | 50 | 6.8E-5 | ||
PANTHER | 31 | 313 | 283 | 1.4E-148 | – | |
PANTHER | 31 | 313 | 283 | 1.4E-148 | – | |
Gene3D | 142 | 248 | 107 | 6.7E-31 | ||
Pfam | 143 | 221 | 79 | 3.6E-7 | ||
CDD | 143 | 239 | 97 | 4.73201E-68 | ||
SUPERFAMILY | 149 | 243 | 95 | 5.43E-16 | ||
MobiDBLite | 240 | 291 | 52 | - | – | |
MobiDBLite | 304 | 341 | 38 | - | – | |
MobiDBLite | 318 | 334 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0281000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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