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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0281000 |
| Transcript ID | LotjaGi1g1v0281000.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT5G53180.2 polypyrimidine tract-binding protein 2; Swiss-Prot: sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2; TrEMBL-Plants: tr|K7KLZ3|K7KLZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0281000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68514280..68518763) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACGCCTTGTTAGCATTGATGTTTTGCACTTGGTAAGCAGTTGCATGTGTATATTAGTTATATGCTAACACTGTTAT GGTGAGGATGCTGGTCACTTAGTTTTGTTATTAGGTTTTTCTTTGTCAGGCTATGGAAAAGTTGTTGACATGTATGTAAA TGAATCAGCAGGCCCATGTCAAGGCAATATCTTCAATGGCAGCTTAGTGCTTTGGGAGAAATAGCGCTTGTGTGTTTGTC TCCTTTTCTCCTTTCCTTAACACTACCTCTTTCTTCCCTATTCTCTCCCTAAACTCCTGCCATTCTTGTAGTTTAGGATG TTACCATTCTTTTTTCATTTTTGCATCCGTGCTTTATTGACTCATCATCTGCATTTTACTTTTACCTAGATTTAGTCACC AAATTCTGTGCTATGCAGTTTTTTTTGGTGTTCCAACTATTGTTTGGCTGTTTTAGATATTTTTAAAGTCTTATCAGATA ATAGTAGGCTAAGTTCCCTTCTAACCTTGGCAATGGAATGCTGAGTTTTCGCATAATTTATAGTTGAGGAGGTCATTTAC TCGCAAATCCTTTGTTTAAAACTTTGTATCAACTAATCAAGCATTGAAGTGAATGATACCATTACCTTCAAATTCTTATA AGTATTATTAGAGAATACAGATATATATTCTTGGCAGTTATTCATCTAAGAAAACTGTGATTTGGATTACATCAGTTGGA TAAACTATACCCCCCCCCCCCCCCCCCAATTTTTGCAGTTAAAGAGAAAACTGTTGCTATTGTTTTGATAGTTTATTGAC TTTTAATCTTGCTCAGTGCTTACAAGTTATAATATTTTAGTTCCTCTGACGCTAATGTATTCAACAAGAGCATTTTTCTA TTAGCATTCCAAGAGATATATTCTGAAATTTTAGACTTGTTAGTGCTCCCACTTTTCTATTGTATACAACTTTAGAAGGC ACAAGACACTGTTCATTTTGTGCTACAGATTTATCTTAGTAAATATCATCTTGAAAGTATATTGTTTACTCATGCAGGTC TTTTCGGCCTTTGGATTTGTGCATAAGATTACAACATTTGAGAAGACAGCAGGATTCCAGGTTTAGTGATAATCATCCCT TGTTTTTTATTCCCTTATTTAATCTAATGAGCACAACCTTATTCTATATAAAACTGTGTAGGCACTGGTGCAATTCTCTG ATGCAGAGACTGCCACAGCTGCAAAGGATGCTTTGGATGGAAGAAACATACCCAGGTAACAATTATATATTTATATTGTT TGACAATGTTTTTAGTTTACTGCTGTGGATCATATGATGGTCTAGTGTGGTTCATACTACATACGTTCTTAGATGGGTTA ACTGTCAGCGGATTTGCTGTTGTATATTCACTCTTCCGCAGTTCTTTGAGTTTTTACATTTAACTTAAGATGGAGTTTAT AGACTTTAACAATTATATTATGTTTTACAATGTTTTTAGTTTACTGCTGTGGATCATATGATGGTCTAGTGTGGTGCATA TGTTCTCATATGGGTCAACTACCAACAGATTTACTGTTGCGTACTTTTGTACATTCACACTTCTTCAGTTCTTTGAGTTT TTACAATTAACTTAATATGGACTTTATAAACATTGTTTTTTGCACTTGATAGCAATTCTATGGATCGTTGAATATAGCAA ATATTATAAGCTACATAATGTCAACCGGATCTTCTTGAATAAATGAATTATAAAGTGCTAAGTTTGAATCAGACTGCAAA ATGCAAATTGGTTGTGATTGGAACATTAATAATTTCATTTTATTTCTCAATTTTTGTTATTTCTGATCATTGATCCTTAA TTTCACCCTGGTATCAGCTATCTGCTCCCTGAGCATGTAGGACCATGTACACTCAGGATCACATATTCTGGACATTCAGA TTTAACTGTTAAGTTTCAAAGCCACAGAAGCAGGTATTGCTTATTTCTTTTGTATGTCTTGCTTATTCGAAACCAAGTTT TGGCAGAACTTTTTATTTTATGTGCCTATAGGCTATAGTATATTCTTTCCTTATCCTGTTGGTTTTTGGTTTATTCCTTG TTTTGTATATTGGTTCTATATCTCACCCTTCATATAACCTTTTATCCCTATTTCGTCCAATGATATGATTTTTTCGATTG GTTACTTTTTCTTGCTCCAGAGACTATACAAATCCTTATCTTCCTGTTGCTCAATCAGCCATGGATGGAAACGGACAGGT AATATTTTGACTATTAAGATCTATGTGTTAAGTATCAGCATGACATCTATTGTTACCTGCTTGTTTGTACATTCAAGCCT TCTAAATTGCTTGTTTTAACTTGAATGCTTACTTCATGGCATCATGCACATCATTTAGGTTTATGCCTTACTGTCACGGG TTTCCTTTGCATGCTGATTTGCTTATCGAGTTTTTTTCCCCTGTTTAAAAATTCATTTATAATTTTTGCAGGTCATGGTT GGTTTGGATGGTAAAAAACTGGAGACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATT GGATGTCTTACATATGGTACTTTAATCTTCACAGCCCATTTTTTCTTTATTGATTAACATATGGTACTTTAATCTTCACA GCCCATTTTTTCTTTATTGATTAACAATACTGTTTAGTTAATAATATCCTGCCTTCTTTTTTCTTTCTTTTGTGCCTCTC TGTAGGTATTCTCTGCTTTTGGACCTATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGATTCAA TATCCAGGTTAGGTTCTTTGAAAAAATTTCCTCATCATTGCTTGGATAGTTAGATATATTATGTTTGTACTTCCGAATGG TATTTGTGCAAACTGGGTGGGTATCAATTGTTTTCCATGTCTCTCAGTTTTAAACATTACATGTGCGTCTATGTAGCCTG ATTCTATGAAAATCAAGCATTTATGGTTTCAACTTACAAATTGGTGAGGAAAATGGCAAGTTTTACTGCACAAATGTCCA TTGCTGAGATTGATTTATTGATTCTGTATAGAAATATTGAAGAAAGATACTTCTAGCTGCATCTTCTTGTTCTTTTGAAC TTCCCTTTAGATTCTGTAGATATGATTGTTCTCTTAAGGAGTATGTGTCTGTTTCTTGCTGGGAATCTCCTCAGTAGGGA ATATGATTATATTTGATTGGTATAATAATGATGATTCAAGTGCAATATGCATGCATTTTTATGTCAGTGACCCAGTGAGT AAAACATGGGGGATTTTGACTTTATCAATAGTAGAAAGCTTTTTAACGGCCTTGTTTTGTTTTATACTATCATTATAAGC TTGAGAACTGAGATAGTGATATGCCATGGGCTTGCAGATACTCAGACAGCTATTGTGGCTAAGGAAGCCTTGGAAGGACA CTGCATTTACGATGGAGGCTTTTGCAAGCTTCACATCTCATATTCACGTCACACAGATCTTAGTATAAAGGTAAACAATC CTATCTAGAGTGAGGGTTGATCTTACTATAAATGCTTGAAAGAGCATATGATTTGGAGATGTCTTAACTCTTAAACCAAT ATGATAAAAGTAAAACAACGGTCCAGTTGTTATACTTATATGAGCAAACAAAGCCAATTCTCTTTGTTCATGGATATACT TAGTCATATATACCCAAAACTTAAGAATCTAGTTTTGGAGTTTGGCTTTCCTTTCTGAGATGATCACTGAAAATCCTTCA ACTGAAGATCAACAGGAATCCCCTCATTATCATATATCTCTGTCACTCGCAGCTTTCTTATGGAATCTCGAGTACTATAA TTACAAAAAATAGATCAACAGGAATCCCCTCATTATCATATATCTCTGTCACTCGCAGCTTTCTTATGGAATCTCGAGTA CTATAATTACAAAAAATACATTATACCGGTCTCATAAAATAAAATTATGATTTGCTGTTCAGTATTATATTTTCTTTTTT ATGCTGGGACTACATTTATCGTAGACTGTAAAATCATTTTTTATGGTTGCTGCTGGTTGGAACCTATTTGTCTCTTGAAA GAATTGCACTTATATTATAACTTCAATTGAACTTTAATTTCAAGGACCATTTTGTGTAATTACAGGTCAATAATGATAGA AGTAGAGACTACACCATTCCCACTACACCTGTTGTGAACACACAGCCCTCAATTTTAGGGCAACAACCTGGTCCTTTGGT GGGTCCTGCTCAGCAATACAATGGGTCTCAGTATACTCCAATTTCTTCACAGTCCCTGACACCTCAATCCCAGGCTGGGT GGGGAGCACCAGCACAGTCTATGCCAATGCAGATGCACAATAATATGTATGTTCCACCTGGAACTATGCCTCCACAAATG GCCCCTGCAATGCAATTTCCAAGTCACAGCTCCCGACAACCTACGGGCTCATTGCCACCATATGGATCCGGTCGCCCTCA ATAG
CDS sequence (LotjaGi1g1v0281000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGCCTTGTTAGCATTGATGTTTTGCACTTGGCCCATGTCAAGGCAATATCTTCAATGGCAGCTTAGTGCTTTGGG AGAAATAGCGCTTGTCTTTTCGGCCTTTGGATTTGTGCATAAGATTACAACATTTGAGAAGACAGCAGGATTCCAGGCAC TGGTGCAATTCTCTGATGCAGAGACTGCCACAGCTGCAAAGGATGCTTTGGATGGAAGAAACATACCCAGCTATCTGCTC CCTGAGCATGTAGGACCATGTACACTCAGGATCACATATTCTGGACATTCAGATTTAACTGTTAAGTTTCAAAGCCACAG AAGCAGAGACTATACAAATCCTTATCTTCCTGTTGCTCAATCAGCCATGGATGGAAACGGACAGGTCATGGTTGGTTTGG ATGGTAAAAAACTGGAGACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGATGTC TTACATATGGTATTCTCTGCTTTTGGACCTATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGAT TCAATATCCAGATACTCAGACAGCTATTGTGGCTAAGGAAGCCTTGGAAGGACACTGCATTTACGATGGAGGCTTTTGCA AGCTTCACATCTCATATTCACGTCACACAGATCTTAGTATAAAGGTCAATAATGATAGAAGTAGAGACTACACCATTCCC ACTACACCTGTTGTGAACACACAGCCCTCAATTTTAGGGCAACAACCTGGTCCTTTGGTGGGTCCTGCTCAGCAATACAA TGGGTCTCAGTATACTCCAATTTCTTCACAGTCCCTGACACCTCAATCCCAGGCTGGGTGGGGAGCACCAGCACAGTCTA TGCCAATGCAGATGCACAATAATATGTATGTTCCACCTGGAACTATGCCTCCACAAATGGCCCCTGCAATGCAATTTCCA AGTCACAGCTCCCGACAACCTACGGGCTCATTGCCACCATATGGATCCGGTCGCCCTCAATAG
Protein sequence (LotjaGi1g1v0281000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHALLALMFCTWPMSRQYLQWQLSALGEIALVFSAFGFVHKITTFEKTAGFQALVQFSDAETATAAKDALDGRNIPSYLL PEHVGPCTLRITYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAMDGNGQVMVGLDGKKLETESNVLLASIENMQYAVTLDV LHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAIVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIP TTPVVNTQPSILGQQPGPLVGPAQQYNGSQYTPISSQSLTPQSQAGWGAPAQSMPMQMHNNMYVPPGTMPPQMAPAMQFP SHSSRQPTGSLPPYGSGRPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 340 | 324 | - | – | |
| Gene3D | 26 | 121 | 96 | 1.2E-23 | ||
| SUPERFAMILY | 29 | 117 | 89 | 5.43E-9 | ||
| Pfam | 29 | 78 | 50 | 6.8E-5 | ||
| PANTHER | 30 | 312 | 283 | 1.4E-148 | – | |
| PANTHER | 30 | 312 | 283 | 1.4E-148 | – | |
| Gene3D | 141 | 247 | 107 | 6.6E-31 | ||
| Pfam | 142 | 220 | 79 | 3.6E-7 | ||
| CDD | 142 | 238 | 97 | 3.24104E-68 | ||
| SUPERFAMILY | 148 | 242 | 95 | 5.43E-16 | ||
| MobiDBLite | 239 | 290 | 52 | - | – | |
| MobiDBLite | 303 | 340 | 38 | - | – | |
| MobiDBLite | 317 | 333 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0281000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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