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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0281800 |
| Transcript ID | LotjaGi1g1v0281800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT4G23810.1 WRKY family transcription factor; Swiss-Prot: sp|Q9SUP6|WRK53_ARATH Probable WRKY transcription factor 53; TrEMBL-Plants: tr|A0A0B2SHC4|A0A0B2SHC4_GLYSO Putative WRKY transcription factor 30; Found in the gene: LotjaGi1g1v0281800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68667843..68670351) extracted from Lotus japonicus Gifu genome v1.2.
CCCTTCATTCCAAACCTTGTCTATATATTTCTGCAAAGCCTATTTCTCTGTCTAACAAACCTTTTTATGTTGTCTCTTGT TCATTCTAATCTTTTGCTTCTTCTGTCAGCACCAACCAACATCTCAAAACTCATACAATCTTAGACATCTCTCCCCTATT TTGTCCTCTAATTAAGTAAATATCCTGTTTAGAGTCGATGTGGCCCATATGGATTCTCACATAAGGTTGGTCTTTTAAAA ACCAAGCTTTTGAACCAATTTGATATCAGTTGAGTTAAGGTGAAATTACATTCATTAATCAGTTCAGTTCACTTTTCGAC TCGAACTTTGTGCTAACACCTGTTAGCACCGGCGTCAACTGATATCGAAACATATACATTCGTGCTTAGGTGCATGGATA ACATGGGGGATCGAAAGAGCCTTGTGCACGAGCTGCTACAAGGTTTGGAGCTGGCAAGGCAGTTACAAATCTTTATCCAC TTGCCTTCTACTTCCAATGAAGCACGTGAGGTCTTGATCCAGAGGGTCATATCCTCATTTGAAAAGGCACTTCAAATTGT TAACCGGAAAGGAACATTGGGCGAGTCATCACAACAACATTCAGGGGTTGCAATCGGAGTGGCAGAGTCACCACAACCCT TTTCTAGTCCCTGCAGTGAAGACTCTGACAGAGACTTCAGGGACCAGGAGCAAAGTCCTTCCAAAAAGAGGTATGTTTAA CTTTCCATGTTGAAAAGTCTCACATTACCTAGAGATATAATCAACGTGTGTGTATATATATATATACATATATATATATA TAAGAAGCGAATTCTTACTTCTAAACAAACTTTTGAGATATAGTTAGTTCTAACCTAAATTCTAAGATGGTATCAAAGCC ACACGATCTTGTTTTGATTTGCCCCCCATGTGTCCTTGTGCTGACATGATGAAGTTTCTTCATGACAGAAACACTTTTCC AAGATGGACAAAAAAGATTCGAGTTACACCAGGGATGGGAGTTGAAGGGCCTCTTGATGATGGATATAGCTGGAGAAAAT ATGGCCAGAAAGACATTCTTGGAGCTATTTATCCCAGGTATAAATCACCAAATTTCCTCATCTTTCATAAATTTCATTCT TCTACAAATTTAATGCCAAGGCTATTATTTTTATTTATTTTATCTTCTATCTCATTTTCACTCATTTTCTTTTTCTATCT TGTCTTCTTTTACCATCATATCAGTTTCCCTGCAATCAGGAGAACCTCGCATTCACTCATTCAAGCATTTTGAATCGTCC CATCAAATATCAATTGATTCACATTTTAAGTTATTACTCTAAATTACTTATTACAATTTAAAATGTGAATCGCCCAAGTA AGATTAGACAGCTAAAAAATATTTGATTGCATGAATGCATGATTTCTCTCACACCAGAGAATCCAAATCTCAGGGTGTAT GTGGTGTGTTTGAGGGTGTGAAAAGATTTTTATTGATATATATAACTTTGAATGAATGCAGAGGCTATTACAGATGCACC CACAGAAATGTTCAAGGATGCTTGGCCACAAAGCAAGTGCAAAGATCTGATGAAGACTCCACTGTGTTTGAAATCACTTA CAGAGGGAACCACACCTGTACAATGGCCTCTAATGTAGTGGTTCCTACACAAAATCCACCAGAAAACCAAGAATCAAATT TGAATACAAATTCTCAGCAGCAAAATGTCCTCAAAAGCCTTGAGCAGGAACCAAACCAGCTTCTTTTGAACCTCAGAGCA GGACTAAGAGTCCAAACAGAGAACCTAGATAACCCTGAGTACAAATCACTTGCTCCATTCAATTTCCCTTCCACTTCAAA CATCAAAATTGAAAACCAAATTTTCCAATCTTGTATACTAGAAAGTAATAGCTTTGCTGAAAACTTCACTTCTAATTCAT ACATGTCCCCTGCTACTGCTACATCAGGGGTGAACAACTTCACAGGGTACCCCAATTTGGCAAGTTCTATTGATTCTCAG ATCAGTGACATGGTTCCTGCTGCTGCTTCAGCTGCAAACTCACCAACAGTTGGTTTGGAGTTTCCATTTGGCCAATTTGA ATTTGATGGCCACAACTTCACGTTCGATAACCAACGATTTCTACACTGATCAATTCAAAGAAGAAGCCATAAACTAATTA AATAAAAAATAGCAAGTGCTGTAAAATTCTTGACTTGTAGAAAGAAATATTGCTATGCCATAGCTACTTGTATCGTAGGG ATGTGAGATTCTAGGCTTGCTTAGTCAACAGGAATGTTTCTTTATCATCAATGATCATAGTTTTTGTTGTTGTGGTTTTC CCAGTTTGCTCATTTTTGGACATTAAATCTTATAGCACTTAGATTTGATTACAACAAGGTAGTGCTTCTTTTTCATTGCT TCCATGATGCAAACTGGGTGATGAAATTGTCATTTACTCGAGTCAGTGAGGAAGGGGAATCCTTTTTGTTTGTTTCCAAT TTCCAGTTTATATCAAATAAATATTGCGA
CDS sequence (LotjaGi1g1v0281800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAACATGGGGGATCGAAAGAGCCTTGTGCACGAGCTGCTACAAGGTTTGGAGCTGGCAAGGCAGTTACAAATCTT TATCCACTTGCCTTCTACTTCCAATGAAGCACGTGAGGTCTTGATCCAGAGGGTCATATCCTCATTTGAAAAGGCACTTC AAATTGTTAACCGGAAAGGAACATTGGGCGAGTCATCACAACAACATTCAGGGGTTGCAATCGGAGTGGCAGAGTCACCA CAACCCTTTTCTAGTCCCTGCAGTGAAGACTCTGACAGAGACTTCAGGGACCAGGAGCAAAGTCCTTCCAAAAAGAGAAA CACTTTTCCAAGATGGACAAAAAAGATTCGAGTTACACCAGGGATGGGAGTTGAAGGGCCTCTTGATGATGGATATAGCT GGAGAAAATATGGCCAGAAAGACATTCTTGGAGCTATTTATCCCAGAGGCTATTACAGATGCACCCACAGAAATGTTCAA GGATGCTTGGCCACAAAGCAAGTGCAAAGATCTGATGAAGACTCCACTGTGTTTGAAATCACTTACAGAGGGAACCACAC CTGTACAATGGCCTCTAATGTAGTGGTTCCTACACAAAATCCACCAGAAAACCAAGAATCAAATTTGAATACAAATTCTC AGCAGCAAAATGTCCTCAAAAGCCTTGAGCAGGAACCAAACCAGCTTCTTTTGAACCTCAGAGCAGGACTAAGAGTCCAA ACAGAGAACCTAGATAACCCTGAGTACAAATCACTTGCTCCATTCAATTTCCCTTCCACTTCAAACATCAAAATTGAAAA CCAAATTTTCCAATCTTGTATACTAGAAAGTAATAGCTTTGCTGAAAACTTCACTTCTAATTCATACATGTCCCCTGCTA CTGCTACATCAGGGGTGAACAACTTCACAGGGTACCCCAATTTGGCAAGTTCTATTGATTCTCAGATCAGTGACATGGTT CCTGCTGCTGCTTCAGCTGCAAACTCACCAACAGTTGGTTTGGAGTTTCCATTTGGCCAATTTGAATTTGATGGCCACAA CTTCACGTTCGATAACCAACGATTTCTACACTGA
Protein sequence (LotjaGi1g1v0281800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNMGDRKSLVHELLQGLELARQLQIFIHLPSTSNEAREVLIQRVISSFEKALQIVNRKGTLGESSQQHSGVAIGVAESP QPFSSPCSEDSDRDFRDQEQSPSKKRNTFPRWTKKIRVTPGMGVEGPLDDGYSWRKYGQKDILGAIYPRGYYRCTHRNVQ GCLATKQVQRSDEDSTVFEITYRGNHTCTMASNVVVPTQNPPENQESNLNTNSQQQNVLKSLEQEPNQLLLNLRAGLRVQ TENLDNPEYKSLAPFNFPSTSNIKIENQIFQSCILESNSFAENFTSNSYMSPATATSGVNNFTGYPNLASSIDSQISDMV PAAASAANSPTVGLEFPFGQFEFDGHNFTFDNQRFLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 8.6E-133 | – | |
| PANTHER | 1 | 355 | 355 | 8.6E-133 | – | |
| MobiDBLite | 77 | 111 | 35 | - | – | |
| MobiDBLite | 89 | 104 | 16 | - | – | |
| Gene3D | 118 | 192 | 75 | 2.0E-27 | ||
| ProSiteProfiles | 123 | 191 | 69 | 23.066 | ||
| SUPERFAMILY | 127 | 190 | 64 | 1.23E-25 | ||
| SMART | 128 | 190 | 63 | 2.6E-40 | ||
| Pfam | 129 | 188 | 60 | 2.9E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0281800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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