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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0281900 |
| Transcript ID | LotjaGi1g1v0281900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT5G53210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q700C7|SPCH_ARATH Transcription factor SPEECHLESS; TrEMBL-Plants: tr|I1JYV1|I1JYV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0281900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68676959..68679981) extracted from Lotus japonicus Gifu genome v1.2.
CAGACTCTCCATACCTAGAGCATTACTTTCACTATATTAAAGTTATAAAACCTTACCACGTTCCCCATTCCAGCTCTCAC ACACACACTCTCTCTCTCTCCATCTTTTCTCATTATTTCCCATTCAGTTTTGATTACTGCATGCATTTGCAGTCTGATAC TGCTCCTGTCCTGCAATTTTCCTTCAGCCTGTGAGATCCCTCCCTTGGCATCTTACCGTTTAAGATCCCTTCCTTTCAAA ATAAAAAATACAAGGACCTAAGGTCAGTAGCAGTTGATGGTGATCGTTTAGTCTCTATCAAATCACCAACCCTCCCTTAT TTACTCTCTTCTTCCTTTCTCTCTCGATCTTAACAACCTTCTTTCTCACTCTCTAATATTATTCCAGTGTCCCTTTCTCA TCCCCGCTGAGTCCATTTTCTAATAGTTTCTTTTGCAGGTTAGAACCAAAACCAAAACAGTTTGAACTTTCAAAATGGAT GACAGTTTATCTGATATTTTTGAGGACACTGAATTTGGGAACAACCAGTTTGGTTCAGATGATCTCTTTGCCATTTTGGA GAGCCTTGAAGGGTTCTCCACCGATTTTCCTCTCGTTAACGAAGCTGTTGCGGTCTCGAATTCCAAAGAGAATACTGAGG AGAGTCCCAGGTTGGTGTCCCAGAAATCAACCTCTTCAAGTGCTTTGCATGATTCAGAAACTGAGCTTGAAACCTCGCCG AAAAGCAATAAGAGACAGAAGGTTAGTCCCACATCGGCGGAGGAGGCGAACCCTGATGGAACACCAAGGATGTCTCACAT TACCGTGGAGCGGAACAGGAGAAAGCAAATGAATGAGCACTTGACTGTCTTGAGGTCACTCATGCCTTGCTTCTATGTTA AAAGGGTAAGGGCTTTTTTTTATTCTCTTTCCAATTTGAAAAATGACTCGTAAACATCAGTACACCTCAGACATCCAACA GACACCTCGACTGAGGTTTAGGTGTATGGTTGTTGGGTTTTGAGAAAAATGACATGTCCATGTACCGCGACTCTTATTCG TATTCTTCCGGTACATTGTTAGGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAGTGAGTTGCAGCAGT TGCTCCAAGCTCTGGAGGCCAAGAAACAAAGAAAAGTCTACAGTGAAGTCCTGAGCCCAAGGCTGGTTTCAAGCCCAAGG CCCTCACCACTGAGCCCACGGAAACAACCACTGAGCCCAAGGCTAAACCTGCCCATAAGCCCAAGAACTCCACAACCAGG AAGCCCATACAAGCCTAGGTTGCCGCAGCAGCAGCTAAACTACATTAACATTCCACCACCAGTGGCGTTCTCAAACTCTC TCGAGCCGTCTCCCACTTCCTCCGCCGCTTCCTCCATCAACGACAACATCAATGAGCTTGTGGCCAATTCCACCTCCGCC GTGGCTGACGTCGAGGTCAAGTTTTCGGGTCCGCATCTGCTTTTGAAAACGGTGTCTCAGCGGATTCCGGGGCAGGCTAT GAAGATTATTTCAACTCTTGAAGATCTTGCGCTAGAAATCCTCCATGTTAACATTAGTTCTAGTACTGCGGATGATACCA TGCTGAACTCGTTCACTATCAAGGTACACTCTTGGTATAAAAAATCAATTCAATGCACCATATATGACTAGGAATCTTTT GGAAATAAATAAGAATAAAAGAAAAGAAGCGAAAAGACCAATCCTCAATTTTTATAGCAAAATTGTTTCATACATTAAAA TAGACATTTCATATTTTCTACATACCTCATCCATTATTTGTCTCTCTGCTACTCATTTTTTACTTTGTGTATGTGTTAGA TGCCTGCATGTTTTCTTTACACATCTTTATATGGTAAGAAAACTTGAGACCTAATTTTTTTTTTCCCATTATCCTAGTTA TGATTTGTAGACACCTCACATGTATCTAATTCTCTCTTTAACTTTTTCTTCTTATCACATTATTTCATATATCATATCGA TTACTCTTCTCTCTTTACTTCCTTATTCACTCTGTGTGTCGGGTGTCAGATTGAAATTTTCCTTTTCCTTTTAAAAAACA TCACTTTATAATTTTATAGACCTAATGTGAAGAAATGTGATATCAAAAAAAATAAGATTTTGTCTCTTTCTTTACCTTGA CTTAAATAATTATGCTTCAAGTGTAAATGTTACACCTTGGTGTAGCTGTGTTTGTTCATTAAACCCTAACTACTAAAATG ATTTTGCTTTTAAGTTCATACACAACTCCATCACAAGAGAATTCATTACCCGTAGCACTCTGTAACATGCAACGAACTAA AATAATGACCATAATGACAATAAATGAAATAACAACAATGTTTGCTTCTTGTATGCTAGTATTAGTACAGTTCTTTATAG TCACAAGTTAAAAATAAATGTCTTTAGGTACTGATTATACTTTTCACTGCACTTGTCTGAGACACAAAAAATACATACAT CGTGGCTCCTATCAGACATTTGTCCTCATTTGCTGAAAGAGACACATAAAATTGCACTGTCGTTTGATGTAAATTGATTA TTTCATAGAAGCTAGGTAGCTATATAACACTTATGATTGGGTATGCATGGTTCTAACGTGTTCAATTTAGGTTCACATTT AATTGTGGTATCTAACACTCCTTTACATACACATAGATTGGAATTGAATGCCAACTGAGTGCTGAAGAACTGGCTCAACA AATCCAGCAAACATTCTGCTAAAGATGGGGTTATGCATGTCCAGAGTCCGGACCAAACATGAATCAATGTGCACCTATTT GTTACTGTGTTTGTACGTACGTAGTTGTACTATTAACAGGGTAACGTAGGAAGAGTCATTTACTTACAAGCATTTGTCTT TCTCTTTCTTTCTTTTTTTTTTAACTACAGAAATCGCTAGTGTAATTGGTAGAGACAACTCAGACAAGTATTAATTAGCT AAACTAGTTTATAGAGAGACTCTCTTGTAAGTTGTAATTGACCACCGTCAAGCTTTAATTTCT
CDS sequence (LotjaGi1g1v0281900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGACAGTTTATCTGATATTTTTGAGGACACTGAATTTGGGAACAACCAGTTTGGTTCAGATGATCTCTTTGCCAT TTTGGAGAGCCTTGAAGGGTTCTCCACCGATTTTCCTCTCGTTAACGAAGCTGTTGCGGTCTCGAATTCCAAAGAGAATA CTGAGGAGAGTCCCAGGTTGGTGTCCCAGAAATCAACCTCTTCAAGTGCTTTGCATGATTCAGAAACTGAGCTTGAAACC TCGCCGAAAAGCAATAAGAGACAGAAGGTTAGTCCCACATCGGCGGAGGAGGCGAACCCTGATGGAACACCAAGGATGTC TCACATTACCGTGGAGCGGAACAGGAGAAAGCAAATGAATGAGCACTTGACTGTCTTGAGGTCACTCATGCCTTGCTTCT ATGTTAAAAGGGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAGTGAGTTGCAGCAGTTGCTCCAAGCT CTGGAGGCCAAGAAACAAAGAAAAGTCTACAGTGAAGTCCTGAGCCCAAGGCTGGTTTCAAGCCCAAGGCCCTCACCACT GAGCCCACGGAAACAACCACTGAGCCCAAGGCTAAACCTGCCCATAAGCCCAAGAACTCCACAACCAGGAAGCCCATACA AGCCTAGGTTGCCGCAGCAGCAGCTAAACTACATTAACATTCCACCACCAGTGGCGTTCTCAAACTCTCTCGAGCCGTCT CCCACTTCCTCCGCCGCTTCCTCCATCAACGACAACATCAATGAGCTTGTGGCCAATTCCACCTCCGCCGTGGCTGACGT CGAGGTCAAGTTTTCGGGTCCGCATCTGCTTTTGAAAACGGTGTCTCAGCGGATTCCGGGGCAGGCTATGAAGATTATTT CAACTCTTGAAGATCTTGCGCTAGAAATCCTCCATGTTAACATTAGTTCTAGTACTGCGGATGATACCATGCTGAACTCG TTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCTGAAGAACTGGCTCAACAAATCCAGCAAACATTCTGCTAA
Protein sequence (LotjaGi1g1v0281900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDSLSDIFEDTEFGNNQFGSDDLFAILESLEGFSTDFPLVNEAVAVSNSKENTEESPRLVSQKSTSSSALHDSETELET SPKSNKRQKVSPTSAEEANPDGTPRMSHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQQLLQA LEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKQPLSPRLNLPISPRTPQPGSPYKPRLPQQQLNYINIPPPVAFSNSLEPS PTSSAASSINDNINELVANSTSAVADVEVKFSGPHLLLKTVSQRIPGQAMKIISTLEDLALEILHVNISSSTADDTMLNS FTIKIGIECQLSAEELAQQIQQTFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 345 | 345 | 7.0E-146 | – | |
| PANTHER | 1 | 345 | 345 | 7.0E-146 | – | |
| MobiDBLite | 49 | 108 | 60 | - | – | |
| MobiDBLite | 49 | 75 | 27 | - | – | |
| MobiDBLite | 85 | 100 | 16 | - | – | |
| Gene3D | 95 | 169 | 75 | 2.6E-12 | ||
| SUPERFAMILY | 102 | 177 | 76 | 4.19E-17 | ||
| ProSiteProfiles | 103 | 154 | 52 | 14.653 | ||
| Pfam | 105 | 155 | 51 | 1.7E-10 | ||
| CDD | 105 | 159 | 55 | 1.23593E-13 | ||
| SMART | 109 | 160 | 52 | 1.7E-10 | ||
| Coils | 147 | 167 | 21 | - | – | |
| MobiDBLite | 175 | 217 | 43 | - | – | |
| MobiDBLite | 200 | 214 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0281900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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