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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0283500 |
Transcript ID | LotjaGi1g1v0283500.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | type-1 restriction enzyme mjaxp r protein (DUF668); TAIR: AT5G04550.1 type-1 restriction enzyme mjaxp r protein (DUF668); Swiss-Prot: sp|P05078|2B_TRVTC Protein 2b; TrEMBL-Plants: tr|A0A0B2QPP5|A0A0B2QPP5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0283500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69062694..69064511) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTGCGGAATCATGGTTTCGCAGCCTGTGGAGGATTCCTCGGAAGCATGATGCTAATTCTGAGAAGTTGGTAATTGG AGTATTAGCATTTGAAATAGCAAGCTTGATGTCCAAGGTGGTTAATTTATGGCAATCATTGAGTGATAAACAGATTGCTA TGTTGAAGGAGGAGATCACCAATTCAATTGGCATAAGAAAGCTTGTTTCAGATGATGATCTTTTCATTGAACGCTTGATC TGTGTAGAGATACTTGAGAATATGGCACATGTGGCCGAGTCCGTGGCTAGGCTTGGGAAGAAATGCAGCGAACCGATTTT GAAAGGTTTCGAGAATGCCTTTTATGAGTTTATCGCTATGGGTGTTGATCCATATGGGTGGGAATTTACTGGCAAGAAGA TGGAGAAAAAAATTAAAAAGATGGAAAGGTTTATATCAACTAATGCAAGTTTGTATCAAGAGATGGAGGTGCTTACTGAT CTTGAGCAAACTTTTACAAGAATGAAGGCTAATGTTGAGTCAGATGTGATAAATTTAATTGAGTATCAGAAAAAGGTTGC ATGGAAGACACAAGAGGTGAAGCACTTGAAGGATATTTCTCTGTGGAACCGGACATACGATTACACAGTACTTCTTTTAG CAAGATCCTTGTTCACAATATACAGAAAGATAAACCAGATATTCGGAATTCATGAGATGGTTGATGTTGGTGGAATCAAC AATTCAAGTGTCTTAAATTCAGATTTCATTTATAGAAGTCAATCGGTTTCTGCGTTATTGCAATCTTCATCCCAACCACC TCAAAATAATCTTGCCAGATTTTCTTCAGGACCCCTTAATTCTATTGCTGCTAGTGCTAGATCAGGTCCAATTGGTAGAA CAAATAAAACCAGCATTTCTCATTCAGGTCCTCTTGGTGACTCATCCACAAAGTCAGGTCCAATTTTAGGAAAGCATACA AAAGTTAATTATTTCTCAGGTCCTCTTGAAAGGAATTTGAATCAACCAGTCCCAGTTACTGGAACAAATAGAAAGAGCAA GATTTGGAAGTTTCATAAACCCTCGGCCACGGCAGGTGCGAAGGAAACTCACACAAGAACAAATCGGCTAACTCAAGTAG GACCTTTCAAGGGATGTATGGCTTGGGACAGTTCCCCTGTCACTGACTGCCACTCAAGACCAAATGGTGTTCATTTTGGA GTTCAGAATGCAAAAGAATTTAGTTCAAACCCTCTTGGTCCTGGAAAAGTAATTCATCATACTCAATCAGTCTTCAAATC TCTGTGCAAGCTATTAAACCCTCCACCTGAAACCCTTGGTTCTGCTGCTTTAGCACTGCACTATGCAAATGTCATCATTG TGATTGAGAAGCTGGCGGCTTCTCCGCACTTGATCGGTCTCGATGCACGAGAAGACTTGTACAACATGTTACCGAGACGC GTGAGAGCTTCCCTTAAGGACAAGTTAAAGCCATATACCAAGACCATGGCCTCTTCATCAGGGTATGACCCGAGTCTAGC AGAAGAATGGACTCAAGCAATGTCAAGCATATTGGAATGGCTGGCACCGCTTGCTCATCACATGATAAGATGGCAATCTG AGAGGAGTTTCGAGCAGCAGAGCTTCGTTTCCCGGACGAATGTGCTGCTGGTGCAGACCCTTTACTTTGCAAACCAAGAA AAGACTGAAGAGGTAATCACCGAGCTTCTTGTGGGTCTGAACTATGTCTGGAAATATGGTAGGGAGCTCAATGCAAAAGC CCTGGCAGAGTGTGGCAGTTTTAGGGTAGACAATGAATATCCTAATCTGAATGGTTAA
CDS sequence (LotjaGi1g1v0283500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCGGAATCATGGTTTCGCAGCCTGTGGAGGATTCCTCGGAAGCATGATGCTAATTCTGAGAAGTTGGTAATTGG AGTATTAGCATTTGAAATAGCAAGCTTGATGTCCAAGGTGGTTAATTTATGGCAATCATTGAGTGATAAACAGATTGCTA TGTTGAAGGAGGAGATCACCAATTCAATTGGCATAAGAAAGCTTGTTTCAGATGATGATCTTTTCATTGAACGCTTGATC TGTGTAGAGATACTTGAGAATATGGCACATGTGGCCGAGTCCGTGGCTAGGCTTGGGAAGAAATGCAGCGAACCGATTTT GAAAGGTTTCGAGAATGCCTTTTATGAGTTTATCGCTATGGGTGTTGATCCATATGGGTGGGAATTTACTGGCAAGAAGA TGGAGAAAAAAATTAAAAAGATGGAAAGGTTTATATCAACTAATGCAAGTTTGTATCAAGAGATGGAGGTGCTTACTGAT CTTGAGCAAACTTTTACAAGAATGAAGGCTAATGTTGAGTCAGATGTGATAAATTTAATTGAGTATCAGAAAAAGGTTGC ATGGAAGACACAAGAGGTGAAGCACTTGAAGGATATTTCTCTGTGGAACCGGACATACGATTACACAGTACTTCTTTTAG CAAGATCCTTGTTCACAATATACAGAAAGATAAACCAGATATTCGGAATTCATGAGATGGTTGATGTTGGTGGAATCAAC AATTCAAGTGTCTTAAATTCAGATTTCATTTATAGAAGTCAATCGGTTTCTGCGTTATTGCAATCTTCATCCCAACCACC TCAAAATAATCTTGCCAGATTTTCTTCAGGACCCCTTAATTCTATTGCTGCTAGTGCTAGATCAGGTCCAATTGGTAGAA CAAATAAAACCAGCATTTCTCATTCAGGTCCTCTTGGTGACTCATCCACAAAGTCAGGTCCAATTTTAGGAAAGCATACA AAAGTTAATTATTTCTCAGGTCCTCTTGAAAGGAATTTGAATCAACCAGTCCCAGTTACTGGAACAAATAGAAAGAGCAA GATTTGGAAGTTTCATAAACCCTCGGCCACGGCAGGTGCGAAGGAAACTCACACAAGAACAAATCGGCTAACTCAAGTAG GACCTTTCAAGGGATGTATGGCTTGGGACAGTTCCCCTGTCACTGACTGCCACTCAAGACCAAATGGTGTTCATTTTGGA GTTCAGAATGCAAAAGAATTTAGTTCAAACCCTCTTGGTCCTGGAAAAGTAATTCATCATACTCAATCAGTCTTCAAATC TCTGTGCAAGCTATTAAACCCTCCACCTGAAACCCTTGGTTCTGCTGCTTTAGCACTGCACTATGCAAATGTCATCATTG TGATTGAGAAGCTGGCGGCTTCTCCGCACTTGATCGGTCTCGATGCACGAGAAGACTTGTACAACATGTTACCGAGACGC GTGAGAGCTTCCCTTAAGGACAAGTTAAAGCCATATACCAAGACCATGGCCTCTTCATCAGGGTATGACCCGAGTCTAGC AGAAGAATGGACTCAAGCAATGTCAAGCATATTGGAATGGCTGGCACCGCTTGCTCATCACATGATAAGATGGCAATCTG AGAGGAGTTTCGAGCAGCAGAGCTTCGTTTCCCGGACGAATGTGCTGCTGGTGCAGACCCTTTACTTTGCAAACCAAGAA AAGACTGAAGAGGTAATCACCGAGCTTCTTGTGGGTCTGAACTATGTCTGGAAATATGGTAGGGAGCTCAATGCAAAAGC CCTGGCAGAGTGTGGCAGTTTTAGGGTAGACAATGAATATCCTAATCTGAATGGTTAA
Protein sequence (LotjaGi1g1v0283500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAESWFRSLWRIPRKHDANSEKLVIGVLAFEIASLMSKVVNLWQSLSDKQIAMLKEEITNSIGIRKLVSDDDLFIERLI CVEILENMAHVAESVARLGKKCSEPILKGFENAFYEFIAMGVDPYGWEFTGKKMEKKIKKMERFISTNASLYQEMEVLTD LEQTFTRMKANVESDVINLIEYQKKVAWKTQEVKHLKDISLWNRTYDYTVLLLARSLFTIYRKINQIFGIHEMVDVGGIN NSSVLNSDFIYRSQSVSALLQSSSQPPQNNLARFSSGPLNSIAASARSGPIGRTNKTSISHSGPLGDSSTKSGPILGKHT KVNYFSGPLERNLNQPVPVTGTNRKSKIWKFHKPSATAGAKETHTRTNRLTQVGPFKGCMAWDSSPVTDCHSRPNGVHFG VQNAKEFSSNPLGPGKVIHHTQSVFKSLCKLLNPPPETLGSAALALHYANVIIVIEKLAASPHLIGLDAREDLYNMLPRR VRASLKDKLKPYTKTMASSSGYDPSLAEEWTQAMSSILEWLAPLAHHMIRWQSERSFEQQSFVSRTNVLLVQTLYFANQE KTEEVITELLVGLNYVWKYGRELNAKALAECGSFRVDNEYPNLNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 603 | 602 | 8.2E-293 | – | |
PANTHER | 2 | 603 | 602 | 8.2E-293 | – | |
Pfam | 28 | 84 | 57 | 3.2E-24 | ||
MobiDBLite | 285 | 317 | 33 | - | – | |
MobiDBLite | 285 | 316 | 32 | - | – | |
Pfam | 438 | 530 | 93 | 1.3E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0283500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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