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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR021864
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 42 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.080s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0050239.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508700850|gb|EOX92746.1| chr0 17056867 17065338 -
2 domain predictions
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Lj0g3v0082249.1
n.a. Uncharacterized protein TCM_020826 [Theobroma cacao] gi|508714071|gb|EOY05968.1| chr0 32276418 32279438 -
2 domain predictions
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Lj0g3v0123809.1
n.a. Uncharacterized protein TCM_020826 [Theobroma cacao] gi|508714071|gb|EOY05968.1| chr0 55543459 55544142 +
2 domain predictions
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Lj0g3v0181709.1
n.a. n.a. chr0 88703495 88704565 -
2 domain predictions
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Lj0g3v0317339.1
n.a. Uncharacterized protein TCM_020826 [Theobroma cacao] gi|508714071|gb|EOY05968.1| chr0 165792048 165792731 -
2 domain predictions
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Lj1g3v0968860.1
n.a. n.a. chr1 12236223 12260761 -
2 domain predictions
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Lj1g3v0968890.1
n.a. Phosphatase 2C 66 isoform 1 [Theobroma cacao] gi|508727093|gb|EOY18990.1| chr1 12263275 12263472 +
2 domain predictions
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Lj1g3v1380790.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508725583|gb|EOY17480.1| chr1 16627075 16634968 +
2 domain predictions
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Lj1g3v2184160.1
n.a. Uncharacterized protein TCM_034234 [Theobroma cacao] gi|508723140|gb|EOY15037.1| chr1 26270729 26275466 +
2 domain predictions
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Lj1g3v4107070.1
n.a. Uncharacterized protein TCM_015003 [Theobroma cacao] gi|508775725|gb|EOY22981.1| chr1 48818050 48820818 -
2 domain predictions
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Lj1g3v4694280.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508716197|gb|EOY08094.1| chr1 55818619 55820858 -
2 domain predictions
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Lj4g3v2846280.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508700850|gb|EOX92746.1| chr4 38104109 38112580 +
2 domain predictions
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Lj5g3v0228130.1
n.a. Uncharacterized protein TCM_034234 [Theobroma cacao] gi|508723140|gb|EOY15037.1| chr5 1934526 1939603 +
2 domain predictions
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Lj5g3v0228130.2
n.a. Uncharacterized protein TCM_034234 [Theobroma cacao] gi|508723140|gb|EOY15037.1| chr5 1934526 1939603 +
2 domain predictions
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Lj5g3v0228130.3
n.a. Uncharacterized protein TCM_034234 [Theobroma cacao] gi|508723140|gb|EOY15037.1| chr5 1934642 1937433 +
2 domain predictions
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Lj5g3v0706570.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508716197|gb|EOY08094.1| chr5 10278458 10281135 -
2 domain predictions
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Lj5g3v1208280.1
n.a. Uncharacterized protein TCM_015003 [Theobroma cacao] gi|508775725|gb|EOY22981.1| chr5 19693490 19695600 -
2 domain predictions
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Lj5g3v1737110.1
n.a. Phosphatase 2C 66 isoform 1 [Theobroma cacao] gi|508727093|gb|EOY18990.1| chr5 24945012 24949109 +
2 domain predictions
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Lj5g3v1872900.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508725583|gb|EOY17480.1| chr5 26744637 26752030 -
2 domain predictions
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LotjaGi1g1v0283500.1
n.a. Plant/protein (DUF668); TAIR: AT5G51670.1 hypothetical protein (DUF668); Swiss-Prot: sp|P05078|2B_TRVTC Protein 2b; TrEMBL-Plants: tr|A0A078FP99|A0A078FP99_BRANA BnaC02g02650D protein; Found in the gene: LotjaGi1g1v0283500 LjG1.1_chr1 69061445 69069166 +
2 domain predictions
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LotjaGi1g1v0283500.2
n.a. Plant/protein (DUF668); TAIR: AT5G51670.1 hypothetical protein (DUF668); Swiss-Prot: sp|Q7S055|ATG11_NEUCR Autophagy-related protein 11; TrEMBL-Plants: tr|A0A078FP99|A0A078FP99_BRANA BnaC02g02650D protein; Found in the gene: LotjaGi1g1v0283500 LjG1.1_chr1 69061489 69069135 +
2 domain predictions
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LotjaGi1g1v0283500.3
n.a. type-1 restriction enzyme mjaxp r protein (DUF668); TAIR: AT5G04550.1 type-1 restriction enzyme mjaxp r protein (DUF668); Swiss-Prot: sp|P05078|2B_TRVTC Protein 2b; TrEMBL-Plants: tr|A0A0B2QPP5|A0A0B2QPP5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0283500 LjG1.1_chr1 69062694 69064511 +
2 domain predictions
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LotjaGi1g1v0283500.4
n.a. Plant/protein (DUF668); TAIR: AT5G51670.1 hypothetical protein (DUF668); Swiss-Prot: sp|Q7S055|ATG11_NEUCR Autophagy-related protein 11; TrEMBL-Plants: tr|A0A078FP99|A0A078FP99_BRANA BnaC02g02650D protein; Found in the gene: LotjaGi1g1v0283500 LjG1.1_chr1 69065690 69069166 +
2 domain predictions
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LotjaGi1g1v0327500.2
n.a. DUF668 family protein; TAIR: AT1G34320.1 Ikzf5 (DUF668); Swiss-Prot: sp|Q827Q7|CARB_STRAW Carbamoyl-phosphate synthase large chain; TrEMBL-Plants: tr|A0A072V1T0|A0A072V1T0_MEDTR DUF668 family protein; Found in the gene: LotjaGi1g1v0327500 LjG1.1_chr1 78184089 78191855 +
2 domain predictions
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LotjaGi1g1v0429400.1
n.a. DUF668 family protein; TAIR: AT1G30755.1 elongation factor G, putative (DUF668); Swiss-Prot: sp|Q65X23|WNK2_ORYSJ Probable serine/threonine-protein kinase WNK2; TrEMBL-Plants: tr|A0A0R0K2P3|A0A0R0K2P3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0429400 LjG1.1_chr1 92438283 92444538 +
2 domain predictions
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LotjaGi1g1v0579300.1
n.a. Avr9/Cf-9 rapidly elicited protein 137, putative; TAIR: AT3G23160.1 plant/protein (DUF668); Swiss-Prot: sp|Q2RK79|MURG_MOOTA UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TrEMBL-Plants: tr|A0A072UAW8|A0A072UAW8_MEDTR Avr9/Cf-9 rapidly elicited protein; Found in the gene: LotjaGi1g1v0579300 LjG1.1_chr1 111891161 111892939 +
2 domain predictions
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LotjaGi1g1v0661900.1
n.a. Plant/protein (DUF668); TAIR: AT5G51670.1 hypothetical protein (DUF668); Swiss-Prot: sp|Q06183|TEBH_EUPCR Telomere-binding protein homolog; TrEMBL-Plants: tr|A0A078FP99|A0A078FP99_BRANA BnaC02g02650D protein; Found in the gene: LotjaGi1g1v0661900 LjG1.1_chr1 122283497 122288194 -
2 domain predictions
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LotjaGi1g1v0681000.1
n.a. Plant/T32M21-140 protein; TAIR: AT5G04550.1 type-1 restriction enzyme mjaxp r protein (DUF668); Swiss-Prot: sp|P39066|ACUB_BACSU Acetoin utilization protein AcuB; TrEMBL-Plants: tr|A0A0B2QAV9|A0A0B2QAV9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0681000 LjG1.1_chr1 124826778 124829430 +
2 domain predictions
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LotjaGi2g1v0157300.1
n.a. type-1 restriction enzyme mjaxp r protein (DUF668); TAIR: AT5G04550.1 type-1 restriction enzyme mjaxp r protein (DUF668); Swiss-Prot: sp|Q8Y1D2|T23O1_RALSO Tryptophan 2,3-dioxygenase 1; TrEMBL-Plants: tr|K7N4E2|K7N4E2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0157300 LjG1.1_chr2 55658897 55663409 -
2 domain predictions
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LotjaGi3g1v0229500.1
n.a. Avr9/Cf-9 rapidly elicited protein; TAIR: AT5G51670.1 hypothetical protein (DUF668); Swiss-Prot: sp|Q21121|MCU_CAEEL Calcium uniporter protein, mitochondrial; TrEMBL-Plants: tr|I1J6Y4|I1J6Y4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0229500 LjG1.1_chr3 35893640 35895798 -
2 domain predictions
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LotjaGi4g1v0415100.1
n.a. DUF668 family protein; TAIR: AT1G34320.1 Ikzf5 (DUF668); Swiss-Prot: sp|Q3KR97|BI2L1_RAT Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1; TrEMBL-Plants: tr|I1KNZ1|I1KNZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0415100 LjG1.1_chr4 79052375 79061260 +
2 domain predictions
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LotjaGi5g1v0005300.1
n.a. DUF668 family protein; TAIR: AT1G30755.2 elongation factor G, putative (DUF668); Swiss-Prot: sp|Q802R9|SMC5_TAKRU Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr|G7I7P5|G7I7P5_MEDTR DUF668 family protein; Found in the gene: LotjaGi5g1v0005300 LjG1.1_chr5 1182436 1189272 -
2 domain predictions
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LotjaGi5g1v0005300.2
n.a. DUF668 family protein; TAIR: AT1G30755.1 elongation factor G, putative (DUF668); Swiss-Prot: sp|Q802R9|SMC5_TAKRU Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr|G7I7P5|G7I7P5_MEDTR DUF668 family protein; Found in the gene: LotjaGi5g1v0005300 LjG1.1_chr5 1182436 1189272 -
2 domain predictions
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LotjaGi5g1v0005300.3
n.a. DUF668 family protein; TAIR: AT1G30755.1 elongation factor G, putative (DUF668); Swiss-Prot: sp|A7Z4J5|RLMN_BACVZ Probable dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|G7I7P5|G7I7P5_MEDTR DUF668 family protein; Found in the gene: LotjaGi5g1v0005300 LjG1.1_chr5 1183315 1189247 -
2 domain predictions
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LotjaGi5g1v0005300.4
n.a. DUF668 family protein; TAIR: AT1G30755.1 elongation factor G, putative (DUF668); Swiss-Prot: sp|A7Z4J5|RLMN_BACVZ Probable dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|G7I7P5|G7I7P5_MEDTR DUF668 family protein; Found in the gene: LotjaGi5g1v0005300 LjG1.1_chr5 1183336 1189077 -
2 domain predictions
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LotjaGi5g1v0090300.1
n.a. Plant/T32M21-140 protein; TAIR: AT5G04550.1 type-1 restriction enzyme mjaxp r protein (DUF668); Swiss-Prot: sp|A8ICS9|CFA46_CHLRE Cilia- and flagella-associated protein 46; TrEMBL-Plants: tr|I3S8U1|I3S8U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0090300 LjG1.1_chr5 15689970 15693135 -
2 domain predictions
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LotjaGi5g1v0182800.1
n.a. Plant/T32M21-140 protein; TAIR: AT3G23160.1 plant/protein (DUF668); Swiss-Prot: sp|Q9BZF9|UACA_HUMAN Uveal autoantigen with coiled-coil domains and ankyrin repeats; TrEMBL-Plants: tr|A0A0B2QR89|A0A0B2QR89_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0182800 LjG1.1_chr5 46543203 46546435 +
2 domain predictions
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LotjaGi5g1v0194200.1
n.a. DUF668 family protein; TAIR: AT5G51670.1 hypothetical protein (DUF668); Swiss-Prot: sp|Q8U8J4|NADB_AGRFC L-aspartate oxidase; TrEMBL-Plants: tr|A0A072TFG5|A0A072TFG5_MEDTR DUF3475 domain protein; Found in the gene: LotjaGi5g1v0194200 LjG1.1_chr5 48891485 48893579 -
2 domain predictions
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LotjaGi5g1v0282300.1
n.a. DUF668 family protein; TAIR: AT1G34320.1 Ikzf5 (DUF668); Swiss-Prot: sp|O06995|PGMB_BACSU Beta-phosphoglucomutase; TrEMBL-Plants: tr|A0A0L9TZ66|A0A0L9TZ66_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0282300 LjG1.1_chr5 59853176 59861080 -
2 domain predictions
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LotjaGi5g1v0282300.2
n.a. DUF668 family protein; TAIR: AT1G34320.1 Ikzf5 (DUF668); Swiss-Prot: sp|O06995|PGMB_BACSU Beta-phosphoglucomutase; TrEMBL-Plants: tr|A0A0L9TZ66|A0A0L9TZ66_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0282300 LjG1.1_chr5 59853752 59860188 -
2 domain predictions
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LotjaGi5g1v0282300.3
n.a. DUF668 family protein; TAIR: AT1G34320.1 Ikzf5 (DUF668); Swiss-Prot: sp|O06995|PGMB_BACSU Beta-phosphoglucomutase; TrEMBL-Plants: tr|A0A0L9TZ66|A0A0L9TZ66_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0282300 LjG1.1_chr5 59853752 59860188 -
2 domain predictions
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LotjaGi6g1v0006800.1
n.a. Plant/T32M21-140 protein; TAIR: AT3G23160.1 plant/protein (DUF668); Swiss-Prot: sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c; TrEMBL-Plants: tr|A0A0B2QR89|A0A0B2QR89_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0006800 LjG1.1_chr6 1335648 1339742 +
2 domain predictions
 –