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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0283500 |
| Transcript ID | LotjaGi1g1v0283500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant/protein (DUF668); TAIR: AT5G51670.1 hypothetical protein (DUF668); Swiss-Prot: sp|Q7S055|ATG11_NEUCR Autophagy-related protein 11; TrEMBL-Plants: tr|A0A078FP99|A0A078FP99_BRANA BnaC02g02650D protein; Found in the gene: LotjaGi1g1v0283500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69065690..69069166) extracted from Lotus japonicus Gifu genome v1.2.
TTTGACTCTTCCTCTCTGCTTTGTTTTGTTTGCATGCACCTTATTTCCTAGTCCTAACACTGCAGCTTCCTCCCTTTCTC CCTTTTTTCACAGTTTCCTCATCTTCCACTATCATATGTTTTTTGCTCCCACCTTTTACATTCTTCAGCTGCTTCTGCTT TTTCTAATGGGTGAGTTCCTGTGCTCTTCTATTCCACTCTACTTCATCATCATGCTCCACTGTTAGCCTTTTTTGTTTTA TGCTGTTAAGATTTGGTTTTAACTGGTAAATTTGCCTCCCCACATGAGCAAACAGGTTGATGAAGTGATGTAAAGCATGT TCTTGGCAAAAACTTTGTAAATTTGTCTTTTTTTAATGGAGCATAATGGCCTTTTGGGATCTGGTTTGTTGTAGGATTTG GGTTTGGTTATGTGATTTTATGAGCATAAATTAAAACTCTTATACCCTTGTTGCTTCTCAATAAATCATTTCTATGCATC AGAAAGTAGAAAGCCCAGGACAAAATCCAAAAAGAGTAACAAGGGGGGAATGTGAACATTATTTTTTGCTTGTTCTGGAA TATATGTAAATTTATTTGGTTTACTGTGGATGATTTGATACAAGGAGTTAATACATCTGTTAGAGTTCTATGCTTTGGAA AAGCATATAAAACATAAAGAATGTTTCATTTTTTTCTTAAAAAAATTAAGCCTTCTCTGATATAATGCCTTGTTCTATCA TCTATGGACTCTTTTCAACTAAAATTTAAAGTAAAAATTTCAAACATCTCTAGCATTTGATCTCCATTTAGTTTAATCCT CATTAAATTTTCCAATTGGTATATTATCACTTATTCATCAATCCCCATAATGAATGCATTTCAACTTTTAGACATTTTTG CTGTTGCTTTAATTTTCCAAAAAATCCAAAATTTTGGCCAGCTAAGAGCTAAATCAATAATGTGTATGTTGTGGTACAGG TCTACCTTAGCCTCATCTATCCATTATTTGGGAAATGCTTAATTTGCAGAATGAAGTTAAACCATGTGAAAATGAAGAAG AACAAGGATAAAGTACTTTGATAAAGGAAACAGATGCTTTTAATTACCCTAGTGATCTAGAGAACCAAACACCATGCCTT TATCTCAAACCTTAAGACATTAGGTATCTAAGTCACATCTCTTATGAAGTTTTCATCTTACCTATTTTTAACCAATATGG GACTTCAACTCACTTAAATTCTCCACAAAAAACTCAAAACATGTGAAACTAAGAAGATCATACAATATACTTTTAAACTA AAATAATTTGAATAGCTTGGCCTTGGCAAGACTATAAGATGTGAGGATGCCATACAAAAGTTAGAAATAGGAATCCAGTA TGCACTAAACCAAATGAATTATTGCAAGCTCAATCCTACCAACTACTCTTTTTTCTCCCAGCTTGGGACACAATAGTCAT AGAAAGCAGGTAAAGTAAAAATTACAGATTGCTTATGGTGTTGGATTATTTTTGGGGTTACAAGTTGTGGCATCATAAAC ATATTTCGTTTGCTTTCATGCAAGTAGTGTGTAATTGTTTCAATATTATCTTTAGATATTTACATTGAGCATCTGAAAAC ATTTGATACAAGTTGAAGTTCATCTGATGAAGGACTTGTCTTAAAGAGCGTAGTCTTTTGCTGTTCCTAGAGCAATGGGT GCGGAGTCATGGTTTCATAGTTTGTGGAGGATTCCTCGGAAGCATGATGCTAATTCTGAGAAGTTGGTAATTGGAGTATT AGCATTTGAAATAGCAAGCTTGATGTCCAAGGTGGTTAATTTATGGCAATCATTGAGTGATAAACAGATTGCTAGGTTGA GAGAGGAGACCACTGATTCAATTGGCCTAAGAAAGCTTATTTCAGATGATGAGAATTTCATTGTACGCTTGATCTGTGTA GAGAAACTTGAGAATATGGCACATGTGGCAGAGTCCGTGGCTAGGCTTGGGAAGAAATGCAGCGATCCAATTTGGAAAGG TTTCGAGAATGCCTTTTATGAGTTTATTGCTATGGGTGTTGATCCATATGGGTGGGAATTTACTGGCAAGAAGATGGAGA AAAATATTAAAAAGATGGAAAGGTTTATATCAACTAATGCAACTTTGTATCAAGAGATGGAGCAATCTCTTACAAGATTG AAGACTAATGGTGAGTCAAGTGTGTTAGATTTAATTGAGTATCAGAAGATGGTTGCATGGAAGACACAGGAGGTGAAGCA CTTGAAGGATATTTCTCTGTGGAACAAGACATATGATTACACAGTACATCTTTTAGCAAGATCGTTATTCACAATATACC GAAAGATTAGCCAGGTATTCGGAGTTCAGGAGATTGTAGATGTGATCTATCAAAAAAGAAACGAGATTGTAGATGTTGGT GGAATCGATAATTCAAGTGTCTTAAATTCAGATTTAATTCATAGAAGTAAATTTTCTGCTCTATTGCAATCTCCTCCACC GAAAACCCTTGGTGCTGCTGCTTTAGCACTGCATTATGCAAATGTCATCATAGTGATTGAGAAGCTGGCGGCTTCTCCGC ACTTGATCGGTCTCGACGCAAGGAAAGACCTGTACAACATGCTACCTAGACGCGTGACAGCTGCCCTTAGGGGCAAGTTG AAGCCATATACCAATACCATGGCCTCTTCATTAGGGTATGACCCGAGTCAGGCAGAAGAATGGACTCAAGCAATGTCAAG CTTATTGGAATGGTTGGCACCGCTTGCTCATCACATGATAAGATGGCAATCTAAGAGGAGTTTCGAGCAGCAAAGCTTTG TTTCCAGGACGAATGTGCTGCTGGTGCAGACCCTTTACTTTGCAAACCAAGAAAAGACGGAACAGGTAATCACGGAGCTT CTTGTGGGTCTGAACTATGTCTGGAGATATGGTATGGAGCTCAATGCAAAAGCTCTAGCAGAGTGTGGCAGTTTAAGGGT AGACAATGGATATCCTAATCTGAATGGTTAAACAAGTTGTGTTAAGGGCATGGTCACTGATTATAGTTCCTTGCCAGAAA CTAAGATGAGGAATTGCAGAAACACCATCCATCAGTCTTTTTCAGATCAACCAATGTGAGTGAAATGGTAGTTGAAGTAT GGGAGGATTATCTATATGCTCAGTACTATGGAAATTTAGTATCAGAATGCTTTCTTGGTGAGGATTTTTTGGAACATTTG TAGTTAATTTTCTTTGATGATTTCCAAGCTGCTAGAACTTGGATGGCTGGTCTCATCTTTGCAATGTTGGCCTTCTTTCC ACTTTTTCTCTTTGAAGAGTTCCTAAATGTTATTTAGGGTGTGCATATTTATGAGCATTATTATGTATTAAATTGTATAG CACTATGGCATGATGTTGAATGGCTTTATCTCTATATCTTCTGAATTGTCAAGCAAGAGAATTGTATATTACTGATAGTA TGAACCATGACCTTTTCTTCTGTTCAGAGTTGAGCGA
CDS sequence (LotjaGi1g1v0283500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCGGAGTCATGGTTTCATAGTTTGTGGAGGATTCCTCGGAAGCATGATGCTAATTCTGAGAAGTTGGTAATTGG AGTATTAGCATTTGAAATAGCAAGCTTGATGTCCAAGGTGGTTAATTTATGGCAATCATTGAGTGATAAACAGATTGCTA GGTTGAGAGAGGAGACCACTGATTCAATTGGCCTAAGAAAGCTTATTTCAGATGATGAGAATTTCATTGTACGCTTGATC TGTGTAGAGAAACTTGAGAATATGGCACATGTGGCAGAGTCCGTGGCTAGGCTTGGGAAGAAATGCAGCGATCCAATTTG GAAAGGTTTCGAGAATGCCTTTTATGAGTTTATTGCTATGGGTGTTGATCCATATGGGTGGGAATTTACTGGCAAGAAGA TGGAGAAAAATATTAAAAAGATGGAAAGGTTTATATCAACTAATGCAACTTTGTATCAAGAGATGGAGCAATCTCTTACA AGATTGAAGACTAATGGTGAGTCAAGTGTGTTAGATTTAATTGAGTATCAGAAGATGGTTGCATGGAAGACACAGGAGGT GAAGCACTTGAAGGATATTTCTCTGTGGAACAAGACATATGATTACACAGTACATCTTTTAGCAAGATCGTTATTCACAA TATACCGAAAGATTAGCCAGGTATTCGGAGTTCAGGAGATTGTAGATGTGATCTATCAAAAAAGAAACGAGATTGTAGAT GTTGGTGGAATCGATAATTCAAGTGTCTTAAATTCAGATTTAATTCATAGAAGTAAATTTTCTGCTCTATTGCAATCTCC TCCACCGAAAACCCTTGGTGCTGCTGCTTTAGCACTGCATTATGCAAATGTCATCATAGTGATTGAGAAGCTGGCGGCTT CTCCGCACTTGATCGGTCTCGACGCAAGGAAAGACCTGTACAACATGCTACCTAGACGCGTGACAGCTGCCCTTAGGGGC AAGTTGAAGCCATATACCAATACCATGGCCTCTTCATTAGGGTATGACCCGAGTCAGGCAGAAGAATGGACTCAAGCAAT GTCAAGCTTATTGGAATGGTTGGCACCGCTTGCTCATCACATGATAAGATGGCAATCTAAGAGGAGTTTCGAGCAGCAAA GCTTTGTTTCCAGGACGAATGTGCTGCTGGTGCAGACCCTTTACTTTGCAAACCAAGAAAAGACGGAACAGGTAATCACG GAGCTTCTTGTGGGTCTGAACTATGTCTGGAGATATGGTATGGAGCTCAATGCAAAAGCTCTAGCAGAGTGTGGCAGTTT AAGGGTAGACAATGGATATCCTAATCTGAATGGTTAA
Protein sequence (LotjaGi1g1v0283500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAESWFHSLWRIPRKHDANSEKLVIGVLAFEIASLMSKVVNLWQSLSDKQIARLREETTDSIGLRKLISDDENFIVRLI CVEKLENMAHVAESVARLGKKCSDPIWKGFENAFYEFIAMGVDPYGWEFTGKKMEKNIKKMERFISTNATLYQEMEQSLT RLKTNGESSVLDLIEYQKMVAWKTQEVKHLKDISLWNKTYDYTVHLLARSLFTIYRKISQVFGVQEIVDVIYQKRNEIVD VGGIDNSSVLNSDLIHRSKFSALLQSPPPKTLGAAALALHYANVIIVIEKLAASPHLIGLDARKDLYNMLPRRVTAALRG KLKPYTNTMASSLGYDPSQAEEWTQAMSSLLEWLAPLAHHMIRWQSKRSFEQQSFVSRTNVLLVQTLYFANQEKTEQVIT ELLVGLNYVWRYGMELNAKALAECGSLRVDNGYPNLNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 266 | 265 | 2.9E-212 | – | |
| PANTHER | 2 | 266 | 265 | 2.9E-212 | – | |
| Pfam | 28 | 84 | 57 | 4.0E-25 | ||
| PANTHER | 254 | 436 | 183 | 2.9E-212 | – | |
| PANTHER | 254 | 436 | 183 | 2.9E-212 | – | |
| Pfam | 271 | 363 | 93 | 1.3E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0283500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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