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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0285500 |
Transcript ID | LotjaGi1g1v0285500.5 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Calcineurin B-like protein; TAIR: AT5G24270.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|O81223|CNBL4_ARATH Calcineurin B-like protein 4; TrEMBL-Plants: tr|G7J6W3|G7J6W3_MEDTR Calcineurin B-like protein 4-1; Found in the gene: LotjaGi1g1v0285500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69390825..69394035) extracted from Lotus japonicus Gifu genome v1.2.
AGCATGCTTGGGTCATCAGACTTGTCTTACCTTATGGATTTTTCCAAAGTGGACAAGGAGAAACCATTTCTTTCTTTCTT TCTTTCTTTCTTTATCTGCATGCTTTGAATATTTCTGAGAACTGTGGAAAGTCAAATATTCTGAACCATCTGTTCCCAAT TCCCAATAGATAAACATGAACTCGACCTTCAGAAGATGTGTAATTTTAATTTAAGGCCATATATTGCTTAAACATATTTA TGTATTGTATAGAACTATAGATCAATGTGATAGGAACATAGTTCATGTTGTAAGCATAGGAGTCATCACTTATCCTTAAA GGAAACTTAAGGGATGAAATGACGTGAGTCAGTAATTCTATTGAGAATTGAGATCCTTTATATGTTTTATTTTTTTCTGG TTCTATTCTGCTTTGTGTCATTTATCTTTGACTGAATTGTTTGTTTACATTGGGTGGTTTGAAATTTAGATAATCCTGTT GTGCTTTTTCCAATTCTCCTTAAGGTTGGCCTTCTGGAGATTCATTTAGCTCCAGTAGTATAGTTGTGATTGAAACTTGA ACTGTTTTTGCAGATATTCAAATCCTGCTGGTCCAAGTGGCATCCCTGGAATGAATCTATTGTTTGTCAAGAAAATTGAG ACTGAAGTTTGTGCTTATATTTAATTTCATGGGCTGCTATTGTTCAACTTCAAAGAAATATAAAACACCAGGATATGAGG AGCCCACTGTTCTTGCTTCTGAGACACCTTGTGAGTATCCATCATCAAGTGGTAATTCTTGCAGCTGTGCTGTTGAATTT TATTTGGCATCTCCTAAGAAACATCAAGCTCCTCTTGTTAACTATCTTTGTCACTACAATGCCATTCTGTTTGTGAATTT AGAAAATGAATGACTTAATATGCTTATAACGTTTGCTAAATTTTTTTAATGTATGCTGTTCAGAATAAACTGCAAAGTTA AAACTTCAATTTCATATTAGCTGTCTCAATCCTTTCAGTTTACAATAATTATTGATAGTTGAATTTGACAAATGGTAATT TAATGAACTCTAGTCAAAACTATAGGTATCAATGTATACAAATCGATCTGGTTTTTCTCCATGTACACAGTTAATATGTA ATCAAAACACAGTTGCATTTGCATTTTGCATAGGATGCTTTCCTTACTCTAGGAAACTCTAATTAGTGTAAGAAAAGAAA GAAAACATACTTCAAAAACACGTGTTTGTTAATCACAAATTTTCGAGTTACAGATATGTATATTCCCTTTTAGAATCCAT GTAAACAATCACTCACACACACGAACCACTTGGAGCAAGAGAAAATTGTTACTTCATAATGTTGAATTGAAGTTTAAGCT ATATTAAACACTAACACCACGTATACATTTCTCTCTTTCTATCTAATATATTTTCGACAGTCATTTCAAACATCTGAAAG TTCCTATCGTAGTACTGATGAGTGATGACTATTATATTTTGGTTTTTCATTCCAAATGCAAAGCATTTAGTTTCATTCAA CACAAAATCATGATTTCTCATTCTCGAGTACAATGTCAAGTTTCAAAACTTAATAAAAGAAGTTCTCTCTTTTTTCTCAG TTTCTGTGAGTGAAGTAGAGGCATTATATGAACTCTATATGAAGGTCAGCAACTCAGTTATTGAAGATGGTCTTATTCAC AAGGTGAATTAGGAATTTTTTAAGATTATAGTGTAGATGGGATTTCCATACTATTGCATAAGTTACTTATTGGTCATCTT TACATCCAGGAAGAATTCCAGCTGGCACTTTTCAGGAATAAAAATGAGAGAAGTCTGTTCGCAGACAGGGTATGTAAATC CGACCTATGCCCTATAGCTTAAGATTCTTTGATCTTGTTCAAGTTCTTAAGATACTTTCAGTGAAAGTATTTTATCTGTG ACTTGTTATCTTGTTATACATTGACAGTCATGTCACCTCTCTTGAGTCTTAACATGCCTGGCACCCTACTGTAATGCTTA TCCATATTCATATTCATTTCTTCTTCTTTATAGATTTTTGACTTATTTGATGTCAAGCGCAATGGTGTCATTGAGTTCGG GGAATTTGTTCGATCATTGGGTGTTTTTCATCCAGATGCAGCTTTAGAAGACAAGATTGCATGTAAGATTGATCTCCAAA TTTTTGTTTCCGGTTTCATTAATTGTTTGGTCACGCATAGATACTGTATCTTCTAACTGGAAATAAAATTTTGCAGTTGC TTTTCGGTTGTATGATCTGAGACAGACAGGGTATATTGAAAGAGAGGAGGTACTTTTTTTTCTCATTTCCCCATCGAATT ACGAATAATTGCTCCTTTATTAGTTTCAACCTTTAAAGTATGCTCTCTTGAGTGGTCTATCTGCAGTTAAAGGAGATGGT ATTGGCACTTCTGCACGAATCAGATCTTGTACTTTCAGATGATATGATAGAAATGATTGTGGATAAGGTTCTTAAAATTT TACCTTATATTATTACTTTCAAGAGATCCTTAAAATTATTGTTCCTTAAGTTGTAAACCTTCTTCCTCAGACTTTTGATG ATGCTGATACAAAAAGTGACGGAAGGATCGATCAAGATGAGTGGAAAGCATTTGTGTCTAAACATCCATCATTGATAAAG AACATGACTCTACCATATCTGAAGTCAGTATATACATTCTCCATGAAGCATTCATTTCAGTAATTGGAATTTTAGAAAAC AAAGCATTTCCAAGTTTTGATACTAAACTCTTATGTTCATGTCTGTCTTGCAGGGATGTTTCCTTAGCATTTCCAAGTTT TGTGGTAAGAACAGAAGTTGAAGACTCAGAGCTGTGACTTTGGAAGGTTTTTGGCATCACCAAGGATGTTGTTATCTTTG ATTCCATCTCCTGATACCATTGCTGCCAAGAAAAGACCATTCCTAAGGTGCCAGAGACAAGGAATGAAGGATAATGATCC ATAGTACAATTTTATCTGGTTCCATATCAGAGCAAAGAGCTTCTAGACTTGCAAACGGCAATCTATAAGTGAGCTCTTTT CTAGTAGCTAAACATATACTGAAAGTGTTATATAAGGCTACAAATTATTCAGTTGGATAGGTTGTACATTTATGTATATA TAAATTATGAGAGCTGCAAAGAGAGTAGCAGATCATGTAACTAGGCCATCTAGCAAATTGAATAAACATTAGCATGATTA CTATTTACTAA
CDS sequence (LotjaGi1g1v0285500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTGCTATTGTTCAACTTCAAAGAAATATAAAACACCAGGATATGAGGAGCCCACTGTTCTTGCTTCTGAGACACC TTTTTCTGTGAGTGAAGTAGAGGCATTATATGAACTCTATATGAAGGTCAGCAACTCAGTTATTGAAGATGGTCTTATTC ACAAGGAAGAATTCCAGCTGGCACTTTTCAGGAATAAAAATGAGAGAAGTCTGTTCGCAGACAGGATTTTTGACTTATTT GATGTCAAGCGCAATGGTGTCATTGAGTTCGGGGAATTTGTTCGATCATTGGGTGTTTTTCATCCAGATGCAGCTTTAGA AGACAAGATTGCATTTGCTTTTCGGTTGTATGATCTGAGACAGACAGGGTATATTGAAAGAGAGGAGTTAAAGGAGATGG TATTGGCACTTCTGCACGAATCAGATCTTGTACTTTCAGATGATATGATAGAAATGATTGTGGATAAGACTTTTGATGAT GCTGATACAAAAAGTGACGGAAGGATCGATCAAGATGAGTGGAAAGCATTTGTGTCTAAACATCCATCATTGATAAAGAA CATGACTCTACCATATCTGAAGGATGTTTCCTTAGCATTTCCAAGTTTTGTGGTAAGAACAGAAGTTGAAGACTCAGAGC TGTGA
Protein sequence (LotjaGi1g1v0285500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCYCSTSKKYKTPGYEEPTVLASETPFSVSEVEALYELYMKVSNSVIEDGLIHKEEFQLALFRNKNERSLFADRIFDLF DVKRNGVIEFGEFVRSLGVFHPDAALEDKIAFAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSDDMIEMIVDKTFDD ADTKSDGRIDQDEWKAFVSKHPSLIKNMTLPYLKDVSLAFPSFVVRTEVEDSEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 214 | 214 | 1.4E-127 | – | |
PANTHER | 1 | 214 | 214 | 1.4E-127 | – | |
Gene3D | 18 | 212 | 195 | 2.3E-62 | – | |
SUPERFAMILY | 21 | 200 | 180 | 1.49E-42 | ||
ProSiteProfiles | 68 | 103 | 36 | 11.222 | ||
SMART | 72 | 100 | 29 | 6.7 | ||
PRINTS | 76 | 97 | 22 | 1.8E-7 | – | |
ProSiteProfiles | 105 | 140 | 36 | 12.114 | ||
Pfam | 108 | 178 | 71 | 6.6E-10 | ||
CDD | 109 | 179 | 71 | 3.33743E-8 | ||
SMART | 109 | 137 | 29 | 1.5 | ||
PRINTS | 123 | 141 | 19 | 1.8E-7 | – | |
ProSiteProfiles | 149 | 184 | 36 | 10.971 | ||
SMART | 153 | 181 | 29 | 0.21 | ||
PRINTS | 169 | 189 | 21 | 1.8E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0285500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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