Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0285500.6

Overview

Field Value
Gene ID LotjaGi1g1v0285500
Transcript ID LotjaGi1g1v0285500.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Calcineurin B-like protein; TAIR: AT5G24270.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q3HRP0|CNBL7_ORYSJ Calcineurin B-like protein 7; TrEMBL-Plants: tr|A0A1J7H6N1|A0A1J7H6N1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0285500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:69391155..69391810) extracted from Lotus japonicus Gifu genome v1.2.

AAATTTTGCAGTTGCTTTTCGGTTGTATGATCTGAGACAGACAGGGTATATTGAAAGAGAGGAGGTACTTTTTTTTCTCA TTTCCCCATCGAATTACGAATAATTGCTCCTTTATTAGTTTCAACCTTTAAAGTATGCTCTCTTGAGTGGTCTATCTGCA GTTAAAGGAGATGGTATTGGCACTTCTGCACGAATCAGATCTTGTACTTTCAGATGATATGATAGAAATGATTGTGGATA AGGTTCTTAAAATTTTACCTTATATTATTACTTTCAAGAGATCCTTAAAATTATTGTTCCTTAAGTTGTAAACCTTCTTC CTCAGACTTTTGATGATGCTGATACAAAAAGTGACGGAAGGATCGATCAAGATGAGTGGAAAGCATTTGTGTCTAAACAT CCATCATTGATAAAGAACATGACTCTACCATATCTGAAGTCAGTATATACATTCTCCATGAAGCATTCATTTCAGTAATT GGAATTTTAGAAAACAAAGCATTTCCAAGTTTTGATACTAAACTCTTATGTTCATGTCTGTCTTGCAGGGATGTTTCCTT AGCATTTCCAAGTTTTGTGGTAAGAACAGAAGTTGAAGACTCAGAGCTGTGACTTTGGAAGGTTTTTGGCATCACCAAGG ATGTTGTTATCTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0285500.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTATTGGCACTTCTGCACGAATCAGATCTTGTACTTTCAGATGATATGATAGAAATGATTGTGGATAAGACTTTTGA TGATGCTGATACAAAAAGTGACGGAAGGATCGATCAAGATGAGTGGAAAGCATTTGTGTCTAAACATCCATCATTGATAA AGAACATGACTCTACCATATCTGAAGGATGTTTCCTTAGCATTTCCAAGTTTTGTGGTAAGAACAGAAGTTGAAGACTCA GAGCTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0285500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLALLHESDLVLSDDMIEMIVDKTFDDADTKSDGRIDQDEWKAFVSKHPSLIKNMTLPYLKDVSLAFPSFVVRTEVEDS EL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.238.10
1 80 80 1.5E-20 –
PANTHER
PTHR23056:SF102
1 82 82 3.3E-44 –
PANTHER
PTHR23056
1 82 82 3.3E-44 –
SUPERFAMILY
SSF47473
3 69 67 6.99E-11
IPR011992
ProSiteProfiles
PS50222
17 52 36 10.971
IPR002048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0285500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…