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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0287600 |
| Transcript ID | LotjaGi1g1v0287600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RWP-RK domain protein; TAIR: AT5G53040.1 RWP-RK domain-containing protein; Swiss-Prot: sp|Q9LVU8|RKD4_ARATH Protein RKD4; TrEMBL-Plants: tr|G7J7G0|G7J7G0_MEDTR RWP-RK domain protein; Found in the gene: LotjaGi1g1v0287600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69798440..69800374) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTTTCCATTATCATCACCATAACCTTAATTTCCATCATTAACATTGTTCAATCACACTCACTCACTCACTCACTATA TATAACGCATCACCATTCACCACCACCATAAAACACACACATTTTCACTTCTTTTTCTGTCTTTCTGTGTTGTTGTCACT ATCTCAAATCCTCTCTCCCTTTCTCTTTCACCACTGACATGGCCGCCTACTCCACAGGCACAGAGCTTGGTTTCCCCTTC CCCAACCTTGACCCTGCCCTCCTCAACTGTTCCATTGTTCCTCAACAACCAACCCAAATTGCAGACAAGTAAGAACACAC ACGGTTCCAAATTTGTGATTTCAGTAGTTGTTTGATTCGATTGTTCTTGTCTGTTATGATTATAATACTATGATGTTTTT CAACAACAACACGAATTTCTATGTGGATTTTGGTACTACTTTTTGGTGTTCTTGTTTTGTGTAATGTAATACACTGTTTG TTTCCCCTTTTTCATGTGTGTGTTGTTGTTTATGATGAACAGAGTGATGGACATTTCGCCATTGGAGGGTTTGTTCGAGC TTGATTGGGATTTGCGTTATCAGAGCAACCACCTTGCCTTCAACGACTTCGACGATCTCGAAAATTTCAGCCGCTACTTC AACCAGCAACTCCCACCTCTCGATGAAGATTTTGAGGTCCACGAGCAAAAATCCCTCAAGGTTGTTCTTCCTGTTCACTG CGGTGGCGGTGGTTCCGGCGGCGAAGCTATTGGGATTGAGTTTGGTGCTGGTGTGACTGTGAAGAAAGAGATGGAGGAGG AGGAGAAGGTGGAGAAGATGCCACCATTGGCGTTAACGTTACCAAGTAGCAGCAGCAGCAGAGTCAGTGTGAAGAAGAGT TGTTCAAGAAAGTTGGAATTTGCTGAAATCAAGAAGCATTTTGGGGTGAAGATTTCTGAGGCGGCGAAGAACATGAATGT TGGCTTGACCTTCCTCAAGAGAAGGTGCAGGGAGCTCAAAATCATGAGGTGGCCTCACAGAAAACTCAAGAGCTTGAACT CTCTCATCGACAATGTCAAGGTACAAAATAATCTTGAGGTACAAATGACATGACATGAAAACTAACATGATTCTGTTCTG GTTTTGTTTATTCTGGTTAGTCTTATCAATTGGGTTTATATGGTGGGAGATTCAACATTGATTGTAGGACCATAGGAGGA GGACCCACCGGGAATGATAAATTGATTATTCAATCAAAATTTTGTAGTTTGTGTTATGTAGCTTTGGTAGGTAATGAAAT CGAGGATTGAAGTTAGAATGATGACTATTTTGTTGAGTCTTGTGTGTCATTTAATGTTTGTTATCAATTGGTCAATGGTT GAAAACTTGGACATGGTTTGATTTGTTGTGTGGCTTAGGAATTGGGATTTGAAAATGAGCTTGCCAAGTTGGAGAAGCAG AGAAGAATGTTGGAGAGAGAGCCAGGAATGGAGCTGAATTTGGAAACCATGAAGCTGAGGCAGGCTTGTTTCAAAGCAAA TTACAAGAGGAGGAGAAGATGCTTGACCATTCAAGCTTGAAGAACTTGATGCTGATCATTTTGCCTGGGATAATGGAGTT AAATATAACAGAACATATGAAGAAACAGAACACAGAAGATTGTAGAGAAGGACTCACTTGGTAGGTAGATAGGGATATTT TGACAGTTTAGGAAACTAATTTGACCTCAACACATGTTTTTTGGTGGTTTTGCTGGATTAGAACAGAGGCCAGAGGAGTA GTTTTTAGCAATTCTTCTATGTTACCTACCCTTGTCAATTTTAATGGTCAAATTTTCCAGTTATGTTTGTAATGGAAAGA TGTTTTTGGATACTGCAAGGAGATTATGCTTTTACCTATTTTTCTCAGGCAATTGTTGCATATATGGTTTGTTCTTTTGT TACATTTTTGTCTTA
CDS sequence (LotjaGi1g1v0287600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCTACTCCACAGGCACAGAGCTTGGTTTCCCCTTCCCCAACCTTGACCCTGCCCTCCTCAACTGTTCCATTGT TCCTCAACAACCAACCCAAATTGCAGACAAAGTGATGGACATTTCGCCATTGGAGGGTTTGTTCGAGCTTGATTGGGATT TGCGTTATCAGAGCAACCACCTTGCCTTCAACGACTTCGACGATCTCGAAAATTTCAGCCGCTACTTCAACCAGCAACTC CCACCTCTCGATGAAGATTTTGAGGTCCACGAGCAAAAATCCCTCAAGGTTGTTCTTCCTGTTCACTGCGGTGGCGGTGG TTCCGGCGGCGAAGCTATTGGGATTGAGTTTGGTGCTGGTGTGACTGTGAAGAAAGAGATGGAGGAGGAGGAGAAGGTGG AGAAGATGCCACCATTGGCGTTAACGTTACCAAGTAGCAGCAGCAGCAGAGTCAGTGTGAAGAAGAGTTGTTCAAGAAAG TTGGAATTTGCTGAAATCAAGAAGCATTTTGGGGTGAAGATTTCTGAGGCGGCGAAGAACATGAATGTTGGCTTGACCTT CCTCAAGAGAAGGTGCAGGGAGCTCAAAATCATGAGGTGGCCTCACAGAAAACTCAAGAGCTTGAACTCTCTCATCGACA ATGTCAAGGAATTGGGATTTGAAAATGAGCTTGCCAAGTTGGAGAAGCAGAGAAGAATGTTGGAGAGAGAGCCAGGAATG GAGCTGAATTTGGAAACCATGAAGCTGAGGCAGGCTTGTTTCAAAGCAAATTACAAGAGGAGGAGAAGATGCTTGACCAT TCAAGCTTGA
Protein sequence (LotjaGi1g1v0287600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAYSTGTELGFPFPNLDPALLNCSIVPQQPTQIADKVMDISPLEGLFELDWDLRYQSNHLAFNDFDDLENFSRYFNQQL PPLDEDFEVHEQKSLKVVLPVHCGGGGSGGEAIGIEFGAGVTVKKEMEEEEKVEKMPPLALTLPSSSSSRVSVKKSCSRK LEFAEIKKHFGVKISEAAKNMNVGLTFLKRRCRELKIMRWPHRKLKSLNSLIDNVKELGFENELAKLEKQRRMLEREPGM ELNLETMKLRQACFKANYKRRRRCLTIQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 64 | 263 | 200 | 4.7E-49 | – | |
| PANTHER | 64 | 263 | 200 | 4.7E-49 | – | |
| ProSiteProfiles | 143 | 229 | 87 | 16.04 | ||
| Pfam | 161 | 208 | 48 | 1.0E-20 | ||
| Coils | 217 | 237 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0287600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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