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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0288500 |
| Transcript ID | LotjaGi1g1v0288500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT3G13140.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9M8K5|HIP32_ARATH Heavy metal-associated isoprenylated plant protein 32; TrEMBL-Plants: tr|A0A1J7IMY5|A0A1J7IMY5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0288500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69935001..69938440) extracted from Lotus japonicus Gifu genome v1.2.
CCTTCTCAATGGCAGCATCATCCGGTATAACGACGTGGCTTTTGCATCCATAGGCAGGAGCAACAGTGGCAATGCTAATG GCAGTGCTTCCAGCACTCCCTTCAGTAACTATTCCACCTGGACGTAGCTGGCCAGATTCTAAAGCCTGCATGAGAAAATC ATTTGGAAAATAAAACAAAAGCCAAAAGAGTAGTAAGTCTGAACTCTGAAGCTAGTTATTGACAAAAAGACAGACGTCAA CAATAAAAACAAAAACCTTATCCCACTAAGTGAGGTCAGTTATATGGCTCACACTACGCCATTGAGCTCGATAAAAAACC AGATTTTGGGAGATATAATTGATAATGAGGTCATTTTTCTAATGTTCTTTTTGGCCTCTCTACCCCTCTTCAGTCTTCAC AAGACTAAAAAGACCATATTATCAACCCTTTTATTGGTCTCTCCAAAAGTCAGTACACGTCCATACCACCTTAACTGATT TTCTGATAGCTTCTCTTTGACGGGTGCTGCCCCAATATCTCCTCTTATATGATCATTGCGCATCTTGTCCTTTCCAGTGT GTCTTAACCTTTGCATTTCTGTTAAGATGGATGAGTCATGAGTGGACACACTAGAAAGGATGAACTCTCCCCAAAGCTAA AACTAAAGCTAATCTTACTCTGAAAAGTTCACACCTCTTACATAAATACACCAATAGTAGAAGTGAAACTTGCCAAGAAT CTGAACAACACACACACAAGAGTTGTAAGGAGAAAACAGAAGAAGTAAAACTTCGGAGAGGCTGTTGATTCGAATCAAAG GGGTGTTACCAATGGCTTCAACGATTCCCTTCTTCTTCTTTTGAGGTTTCTTCTTGGAGATGAAATAGGCCACCACCAAC GACACGACCAAGATTGCACCAACAGCGCCTGCGCTTCTCGCATTTTTGGACAAGATGGTGGGTTTTGCTGTGCAAAGGGC CCATGGATTTTAATGGCCCAAGTCCATATTTCAGCTTCTAAAACCCCAAATTCCCAACAGAAGAAGAAACCCTCATTCCA CCCAATCTCCTTCCTTCCTATAGCTGCTGCCCCATCCACCTCCGACCACCGCTCCGCCCATTCCCCGGTTACCTGCCGCC GTGCGACCACCAAGCTCTAAGGTAATTTTTCTCTGCAATTGTTTCTGCGTCCTCTCACCTCTGTTTCTCAGTTTCCTCTG TTTTGCAATGGCAAGTGGCATTGGCACTACATTGGGAATTGGGATTGGGATTGGATGATTAGTTATTTAGATTAAATTCT ACTCTTTAGACTTTATTTTTCATGTCAATTAAAACATAAAGTCGTCTTGAATTTGTCATGATGTTTTGGTAATTGATATG TAATATGCTCAATGAGAACATCAAGTCTTGTACCTATCTACTATCTAATATCTACTTTTGTTATGATATTTGCTATTGTA TAAGTTAGCAGAATTTTTATTTGTTGTATTGTATAATTGCATTATATAAGTTTTTAATGTGTGTACGTATAATTATATAT ATATATATATATATATATTTATAATTTTTTTTATTAAAGCTGCCATGGCAGCATCGCCATAATTATATGGCGTTATTTTG GCTTTTCACTATGGACCGTCATCCGTCATTGATAACACTGCTATCAGGTCTTATGCTATACAACATAGACCTAAAAATAA TTGCCTTGTATAAAACAAAATATAAAGATAAGTGTTGAATTGATTTGATAATGTTTTTTTTTTGAAATGTAATTGATTTT ATAATGTTGATTGCGGCAGTGTTATAAAGGGAGATAATTTCACTTAAATGAGGGAGTAAATTTTCAGAAAGGGAAGTTTG ATATTTTATGGAAACAAATAATGGGATGAAATCAAATTCAAAATCTGGTAACAAAATAAACACAAGATGAATAAAGGGTT ATGAGATATGCATATAAAAAACCAGATATCTGTTGATATTATCCTAAAATTCTCAAGCCTTTCTTACTCAGCAGTGCAAA AGAATTTGACTTTTGCCGCAGTGTAAATTTTGCAGTTTCTGGATTCAGACAAATAAAACTAAATATGGCACCGTTTTGAT GTTTTTTCGGGAGGACTTGTGCAATGGAATACTCTTCCGCTGAAATGGTAATACATATTCATCTTTTCATGGTTTTGTTT TAATCTTTTTTTGGCGCACCTTGTAATGGCTTCTTTATCCCAATTTTTTCAGGTTTGTATTCTAAAAGTAAATACCAAGT GTGAGGGATGTAAAGTGAAAGTGATGCAGATTTTGCAGAGTGTTCATGGTATTTTCTATATCCTGATCTCCATGATTGAT TTCATATTGAAAATTGTTGCAAATAGTCTAAGCTTTTGATATCGCCAGTCCCATCCCAGGGACGGAACCAGAAAAATTGG GTAAGGGGATGGAGAAATTTAGCACACTAATGATAATAATATTTGAATACTGTTCTATTGAGGAAGTTTTTCCTCTTGGG GAGTGACTGCCCAATTTTCACCTTATGTCGTTCCGTCGTCCTTGGTCAATCCCTAATTTTAAACAACCAAAAAAGTATTG ACATCCGCACACATTTCATTTTTCTCTGTGTTCTGATCAAATCATATCATATATCATACTTTTCTCAACATTTTGGTTAT CTCATCTGCTATCAGTTTCTAAATTGGAAAATTCATTTTCAGGGGTCTACAACATCACCCTTGATGGGGATCAAGATACA GTGAAAGTTACTGGCAGAGTGAACCCAAATACATTGTTGAGTGTGCTTGAGAGACATGGGAAACATGCAGAGATCAAGTA TATCAAGTTTAATGGTGAGGCTATGGACATGGGTTCTTATTATAATTATGGAGATTATGGATATGCTCCTCCTTATGGTA TGGAATTTTCACCATATCCCTCATTGCCATATCCTCAACACCAGTTTTATCCACCTCCAATGGCGCCACCACCACCACCA CCACCAGCACCAGCACCACCCGCACCACCACCATATTGGGCAGCACCACCACCTCGTCCTTATGGACCTCCTCTTTTTAC ATCTACCTTGCCGCCGCGGCCACCTAAACCTGCTCCCCCAAAGAATGTGGTAAAGGAAAAGAGCCATTGTGCAATGATGT AGGAATTATTATTGCAATTATTTGTTTTTCTTGAATTATTTGATTCATTTTGAACTCGCATAAGGAAATAATAATACGCA TAATTATTGCGGAACAATTATTATTTTTTTTTTGATTCGCGGAACAATTATTGCGATATCTATCTATTTATCATCATATA GTAATACTAAATCGTGGACTGTGACGACGTCATATCATCTCTTTACATTTGCTCAATTTTTCCACATCAGCTTCTGATAT GAGGTGGCAATGTGCCAATGTGAACCATTTCTTTCTTAGGCTATTGCAGTACCTCTTTCATCTTCTCAAACTTTTGTAAC
CDS sequence (LotjaGi1g1v0288500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATACTCTTCCGCTGAAATGGTTTGTATTCTAAAAGTAAATACCAAGTGTGAGGGATGTAAAGTGAAAGTGATGCA GATTTTGCAGAGTGTTCATGGGGTCTACAACATCACCCTTGATGGGGATCAAGATACAGTGAAAGTTACTGGCAGAGTGA ACCCAAATACATTGTTGAGTGTGCTTGAGAGACATGGGAAACATGCAGAGATCAAGTATATCAAGTTTAATGGTGAGGCT ATGGACATGGGTTCTTATTATAATTATGGAGATTATGGATATGCTCCTCCTTATGGTATGGAATTTTCACCATATCCCTC ATTGCCATATCCTCAACACCAGTTTTATCCACCTCCAATGGCGCCACCACCACCACCACCACCAGCACCAGCACCACCCG CACCACCACCATATTGGGCAGCACCACCACCTCGTCCTTATGGACCTCCTCTTTTTACATCTACCTTGCCGCCGCGGCCA CCTAAACCTGCTCCCCCAAAGAATGTGGTAAAGGAAAAGAGCCATTGTGCAATGATGTAG
Protein sequence (LotjaGi1g1v0288500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEYSSAEMVCILKVNTKCEGCKVKVMQILQSVHGVYNITLDGDQDTVKVTGRVNPNTLLSVLERHGKHAEIKYIKFNGEA MDMGSYYNYGDYGYAPPYGMEFSPYPSLPYPQHQFYPPPMAPPPPPPPAPAPPAPPPYWAAPPPRPYGPPLFTSTLPPRP PKPAPPKNVVKEKSHCAMM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 100 | 95 | 1.6E-27 | – | |
| PANTHER | 6 | 100 | 95 | 1.6E-27 | – | |
| Gene3D | 7 | 74 | 68 | 2.1E-16 | – | |
| SUPERFAMILY | 8 | 71 | 64 | 3.27E-10 | ||
| Pfam | 13 | 68 | 56 | 6.0E-9 | ||
| CDD | 18 | 70 | 53 | 1.643E-4 | ||
| ProSiteProfiles | 18 | 71 | 54 | 9.02 | ||
| MobiDBLite | 119 | 167 | 49 | - | – | |
| MobiDBLite | 119 | 179 | 61 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0288500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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