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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0288600 |
| Transcript ID | LotjaGi1g1v0288600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G55590.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9FM79|PME62_ARATH Pectinesterase QRT1; TrEMBL-Plants: tr|A0A1J7HUE3|A0A1J7HUE3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0288600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69954640..69958491) extracted from Lotus japonicus Gifu genome v1.2.
ACTTTACATGATCAAGTTTACAAATAAAAACACACTTAGTTACACAACACTCTTTCAACTGCATTAGGCAGAGTCTCATT TTGCTAAAAAAAAAGCTTTAACACAAAGGGTCCCTTTTAAACTCAAAAAAAAAAAAACCCATTTTCATTCCTTGCATATA TTATGAAAGTTTCCTCTTGATGATTCATAATGGCATCATGCAATGCAAGCCTTACCATTAGGATTTGAAAGAATCATCAT AATGCTTGCTTATTTATTGCAACCAGCTATTTCATGAACAACTCACCCTTTGTTTCTCATTGGAGTTTCAAATCATGGGG TTGTCTTTGAGAGTTGTAGTCTTGTTTGTATTGGCTTTTATGATGTTTTCTCAGGTAGATTTAGCAGAAGGTGGACAGGA CAACAGAGTTAGGAGCTACATTAGTTGGGAAGATTTGAAGGTGGATGAGCAAAGATGTTAGAGTTATCATGGTTGATCAG CATGGAAGGGGACATTCAAAAACTGTTCAAGGTGCAGTGGATATGGTTCCAGATCACAACACACAAAGGGTCAAAATCTA TATTTTCCCAGGAGTTTACAGGTCAAAATCTACATTTTTCAGAATTTTTCTTTTTTTTTCTTTTACTTTCATCACCTTCA TGGTTCTAAATTGTGCCGCATCGCGGTAATTGCGGCCCTTTCAACCTGCATTTGCCCGCTACCACAATTTGAAACCCTAA TCACCTTTGTTTCACTATCTTGTTCTAGTAAAAAGCATTTGTTTTCATTCTTTGCCTTAATTTTCATTGCTTTACACTTA CTCCTTACCTTATCATGAAAAAACTTTTATGTTTTTTTCACCATTTTTTATATGCAATTTGTGCAGAGAAAAAGTGCTTG TGACAAAAACCAAGCCTTATGTATCATTTATAGGTAAAAGAAATCAAACAGCAAGTGCTGTGATTACTTGGAATAGCAAG TCATCAGATAAAGGTCCAAATGGCCAAGCATTAGGCACTTATGGCTCAGCAACTGTAGCAGTAGAATCAGATTATTTTTG TGCAACTGAGATCACTTTTGAGGTAAGAACATTATGAATTGGATGGGATGCGAATCAAAAAGCACTTATTGGAGCTTATC TACTTGACAAAACACTAGATAAGCTCCAATAAGTATGCAATCGAACAGGCTATATTTTATTGCATAAACACATAATGAAT TACCAAGAGAAATTTTGGAATTTGTGATATTATTGGGTGGTTGTTGCAGAACACAGTAGTTACAGCACCTGGTACAAAAG GAATGCAAGCAGTGACACTAAGAGTAGACAGTGATAGAGCCATGTTCTATGGAGTTAAGATTAAGGGAACACAGGACACT CTTTTAGACAGCACAGGAACCCATTACTTCTACAAGTGTCTCATCCAAGGCAAAGTTGATTTCATCTTTGGTAGTGCAAA ATCACTATATGAGGTAAGATTATAAAGTAGCTAACGAGTCCATTTATAGTATGTTCGAATCAACTTCTTTTTCCTCAGAA TCAATTCTGAAATTCAGAAACTACTCACATAAGCTTGAATTTAGAATCAATTATGGGAGAATTTTCAAACGTACACTTGC AGAACTGTCGTATTGAGTCAATAGCTGAGAACTACGGAGCCATTGCAGCGCATCACAGGGATTCGCCACATGAGGATACA GGTTTTTCTTTTGGCTTATTAGCACTTTTGGTCCCCCAGGTTTCAAAAATGTGCAAACGGAGTCCCCCAAGTTTAAAAAT AGCATTTTACTACCCCGATGTTAAGCTCCGTCAACACTTTTGGTCCCCCGCAAGTTTTCCATCCAAAAACTAACGGTTCT AAGGGTAAATATGTAATTAAACAAAAAATAATTAATTAAAATATTAAAAAAACCTACAAAAACCCATAAAGTTATCTCCT CAGTCATCTCCCTCATCATCTTCATCCCCTTGCCCAGAAAAAACCCAAAAAAAAAATATCTTCCTCTCCCAAACATCTCC ATATTCTCCAAATCAATTAAGAAATGAAGCCTGATCTTCATTTCATTCTTCTTTAACTATGAAATGAACCTAATTCCTTA ATATGACAGATTGATTCTCTACAACATGATCAAGCATGCAAGGAATGAATTGAAGCAATAACAAAAGATGAATTGCACAA TAAACAAGAAACAATGGAAGTTGTAGATCGAAGGACGAGGAAGGTGGAAGCTGTGATGGCGCGGTGGTGACTGTAGGTTT TGGGTCATTTCGATTTGGTGTATAGAACAAGGATCTGGATCTGGAACGACTTGGGTCTCTGCTTCATCTTTTGTGATAAA TTTCGTTTGGGTTTTGATAAATATTGGTTTTTTGATGTGGGTTGATGAGGTTATTTTTCTGGGTTTATTCTTCATTTTAT GGGTAGGAAAAACCCTCTCCTATGCACAAATCAACTCTAATCACATGAAGGTTTCTTCAAGTTCTGTTTACTGGGCGATA GTTGTTGAGCTGCTCGAAGATGCCCACACTATTATTGGCCTCCCTACATGGCCAATGTGTAGGAATGGGTATGTTATGTG CTGATATTTTTATTTTCTTTTTCTTTACTTTCTCCCTACTGGTAGTGGTATGGTTCTTGCAATGTCATATTACCTCTTTT TTGTGTGAATTTCAGTTCTGAATTTGAAGATGATTGAGGAAGAAGATGAAGATCAAGGGTTTGCAGGGCTTTTAATGTTT TTCTATTTTTTTAATTAATTTTTGAGTTCAATTGCACTTTTAGTCCCCAAAGTCGTTAGTTTTTGGATGGAAAACTGGCG GGGGACCAAAAGTGTTGACGGAGCTTAACGTCGGGGTAGTGAAATGCTATTTTTAAACTTAGTGGACTCCGTTTGCACAT TTTTGAAATCTGGGGGACCAAAAGTGCTAATAAGCCTTTTCTTTTTTAGGGTGTAGCATTGGAGGAAGTGGTGGCAATGT GTACCTTGGGAGAGCATGGGGGGAATACTCAAGAATAATATACTCAAATTGCAACATGGATAATATTATTAATCCTCAAG GATGGTCTGAATGGAATCATCCAGAAAGAAAGAAGTATAATATCTCACTTGTTCTGGATTTGAGATTATGATTCTATAAT TAAAAGTGCATACTTATATCTAAGATTATGGTATTTCAGGACTGCAGTTTTTGGTGAGTATCAGTGTCATGGAAGAGGAG CAGATAGAAGACACAGGGTACCTTGGTCAAAATCATTCAACTATGAAGAAGCTAGGCCCTTTTTGGACAAGAGCTTCATA AATGGAGATCAGTGGCTCAGATTGTAACATTTCCTTTTATTGTATTACATACATTATTTCATTATTTATCTCCTTGTTCA TTATCTTATACATATCACCAATGAAAAAAAATTGATGCTATGATTAGTACTTTAGTAGGGAGTCCCAAATGCTCAATCTG TATTATAAATTCATAATCATAAATCATAATGAATTGCAACATGTTTTTACCCTTGAAGCAACACTTACAAGTATTGTCTT TGTTATTGCCACAATATATGGCTGCCTACATGCTTTGTTTGAATTCATAACAGAAAAAATAAAATTGAATGAGTAGGAAA AAATGTGGAGAAAATTATACACTTTTACCTTATCCAAGTGCTTTGTTTGAATGGATAGCAGAAATGAAAAGAAAAAATAT ATATAATGAATGGGGAAAATGGGAAAACTAACCATTTACTCTTTCACAAAATGAAGAGAAAATAAGAAAGAAAATTGAAA AAAAAAATCAAAATTTTACACCCCTACTTTTTTATATGTAATGAAATACAAACACTAGTTACCACCAAACGTGTAGTTCA ACTAGCGTGAGA
CDS sequence (LotjaGi1g1v0288600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAAGATGTTAGAGTTATCATGGTTGATCAGCATGGAAGGGGACATTCAAAAACTGTTCAAGGTGCAGTGGATAT GGTTCCAGATCACAACACACAAAGGGTCAAAATCTATATTTTCCCAGGAGTTTACAGAGAAAAAGTGCTTGTGACAAAAA CCAAGCCTTATGTATCATTTATAGGTAAAAGAAATCAAACAGCAAGTGCTGTGATTACTTGGAATAGCAAGTCATCAGAT AAAGGTCCAAATGGCCAAGCATTAGGCACTTATGGCTCAGCAACTGTAGCAGTAGAATCAGATTATTTTTGTGCAACTGA GATCACTTTTGAGAACACAGTAGTTACAGCACCTGGTACAAAAGGAATGCAAGCAGTGACACTAAGAGTAGACAGTGATA GAGCCATGTTCTATGGAGTTAAGATTAAGGGAACACAGGACACTCTTTTAGACAGCACAGGAACCCATTACTTCTACAAG TGTCTCATCCAAGGCAAAGTTGATTTCATCTTTGGTAGTGCAAAATCACTATATGAGGTAAGATTATAA
Protein sequence (LotjaGi1g1v0288600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKDVRVIMVDQHGRGHSKTVQGAVDMVPDHNTQRVKIYIFPGVYREKVLVTKTKPYVSFIGKRNQTASAVITWNSKSSD KGPNGQALGTYGSATVAVESDYFCATEITFENTVVTAPGTKGMQAVTLRVDSDRAMFYGVKIKGTQDTLLDSTGTHYFYK CLIQGKVDFIFGSAKSLYEVRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 180 | 179 | 1.3E-56 | ||
| PANTHER | 3 | 179 | 177 | 3.3E-91 | – | |
| PANTHER | 3 | 179 | 177 | 3.3E-91 | – | |
| SUPERFAMILY | 7 | 179 | 173 | 3.04E-44 | ||
| Pfam | 8 | 177 | 170 | 8.5E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0288600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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