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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0290300 |
| Transcript ID | LotjaGi1g1v0290300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein yippee-like; TAIR: AT4G27745.1 Yippee family putative zinc-binding protein; Swiss-Prot: sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745; TrEMBL-Plants: tr|I3SRT1|I3SRT1_LOTJA Protein yippee-like; Found in the gene: LotjaGi1g1v0290300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:70571176..70574637) extracted from Lotus japonicus Gifu genome v1.2.
TAGCCTTGTGTTTGATTTGTTTTTTTATTTTAACCATTCATTTTATTTAAGATGATGGTTACTGTAGTAGTGTGCAAGTA TATAGTGGCGTTTTTTTCCCCATAAGCGGCTATGTCTCTATCTGAAGACCGAGTTATATATATATTTTTTTTCTTTATAA TCAAATCAACCTTCTGATTGAGAATCTTCACAAAATTTTGTGATCAATTCATTCTCTAGCCAATTCTTGCACGCTAACTC TCTTTTCTCCTTCTTCTTATTCTTATCTTCTTTACTTGAGCTTGCTTCTGGTAATGAAATTTCACTCTTTAGCTTTATTG AATCTGTTGGAACCCCTTGTTTTTCTGCATCTGATTAATTTCTTTCTAATCATAACTAGTGTATGTTTATTTGCAGCAGT GAGGTGTTTAATCTGAATTTTTCTAATTTTTTACCATTTGATTATGGGGGAGCTGATTGGACCTCGCTTGTACAGCTGCT GTAATTGCAGAAACCATGTCTCTCTCCATGATGATATCATTTCCAAGGCTTTTCAGGTGAATTCAAGCATCTCTTTCTGC TCTCTCTTTCTGTGTTTTGCTTTTCTGGGTGGTTTTTGGGGCCAAACATTTTTATCAGAATGTTACCAGTTTCTACATTT AATACTTAAATGATGTCGATTTGAGTAACTACTGTCTTGTTTGCTGGATTATGATGGTCATATAGCATGTTTGGGTTACC TTCTATTGTTTTTAGAATCAATTCTGACAGACAAAAGTTTTCAAAAGTCCATTCTGACACCCAAAAGCTACTCATAAAAG CTTCTACCCGGAATTGGTTTTGGCTTTAAAGTTTAAAATCAATTGGATTCCTAAAATTGCACTTAGTGCCTATAACATGC CCACTTGAAAATTTCTCCACCAGCAACTGGCTATTCCCCTTTCTGACACTTTTTTCCAGCTATTATTGGACTGAATTTGA TGATTTTTACGCACCATCACTAATGTTTTGTGAGGAGGAAAGGTAAAGTGTAGAATTCTAGGGTGATTTCAGGAGAGGGT AAAGGTTGGAGCTCATGCTCTGTGAATGAGGTGAGGCTCAAGAAGTCAAGAGGTCTTGTTCCATATACAATGTACTAGAC TCAACTGAGTTCACTTCTAAAGCCAAACATGTACATTTTTAATGCTAATATGGGCTGCAATGAATTTCAGGTCATAAGTT CTAATTTGAAAAGGAATGAAGTTGCTTTTTAAATTCAATCTTAGATTCAAATTTGGGTAATTCCTTATTCTTTTTTCTTT ATCAATAGGAATTAAAAGAATTTATTCGATACTATGTATCAATACTGATGAGTTTCTGATGCATTGTGGTCTTAGTTTGA TGTAATGATTACATGCTTGGTAGAATAAATAAAGGTCCCAACTTGTAATGAGTAGTGAGTTTTGCATATTTCAGAAAGTG TGTGGTGAAAGTGGTATAGTGAGACAAATGGGTGATAGTGACAATTTAGGTGTGAATGCTGCAGACATGTTCTGTTTACA ATAACTTATTTGCCTATACAGAAAGTGACAGTCACTATACATGTCTGTTGTTGGTGACTGTCACTGTGATTTTCAATGAA GGTTATCATAATAGTGTGGATACTTTTGGTGGAAAACAGCATCTCGAAAGTGATGGGAAGAAAATGGGAATGGTAAAGAG ATGATGCATATTTGATTAAAGTAGGTGATTAAGATTTTCAACCCTTAACATCCACTACTGGTTTTACTAACATAACAGTC AAATATCACCAACATTGCTGATATGTTTTGTTTGTTCAATTGTTATGAAACATTCTCAAGGGACCATTGCTTTCTCATTT AGTTGTATGATGTTTTATCCCTAACAAAAGCTTGCCTGGATCATCTTCTGATATTCTTTTCATAATTTTTGTAACTAGGG AAAAAATGGCCGAGCTTTTCTGTTTTCCCATGCTATGAATGTTGTGACAGGGCCAAAAGAAGACAGGCATCTCTTGACTG GCCTACACACTGTTGCTGATGTTTATTGCGGTGATTGCCGAGAAGTGCTGGGTTGGAAGTATGAAAGAGCTTATGAAGCA TCCCAGAAATACAAGGAAGGAAAATTCATTCTTGAGAAATCAAAAATTGTTAAGGAGAACTGGTAGCATCCCCCCTTCTT TTCCACTCATCATGTGTAGATTTATTCATGCTCTTTGGGGTTTATCTCTTGTACAGGAAGTTCTTCACTTCGCCCGTTTA AAATTTGTCATTACTTCTCCACCTGCATTATATTTCCTGGTGTTGTGACTGGAAATGAAATTGTAAGAATTAAGATAATC TGTTAATTCATTGTCAGTAAATTGTGTATTCATTTTCTGGTCTATGATTTTCAAGGTTGAAATCAAACTACTAAACCATC TTACACATTTCTGTTTTGGAAGATGAATTTTGCTGACAGGAAGTGTTTTACTTCAGCTATTCTCTTTAGCCTTGGTGGTT GTGGCTTGATATATGAAGTATATATGTATGTTGCAACCCTTTTCATGATGAAATTAAATATTTCGGTTTAACACAAGTTT GCAGGCCAGAGCTTCAATATTTGAAGTTCTGCTTCCCTTTGTCAACAACACTAATTGCTCACACATAACAGCATGGCATG TAGTCCAAGCCTATAATGTTTGGTATTCTGTTTCCATTTTCCTATCTTGTCCTGGTGTTTAGTACTGACCAATAATAGGG TTCCAGCATTTAGGAAAATTCAATTGCAGGAAATCCAAATTCGCCGTAACTGGATCAGGCTTCCCAACAGTAAGACTTTT ATAAATTCACCTCAGTCATAGCTTCATGACTGCCTAATCAAGATTGGATGGTTTAGATTTAAAATCTAATTTCAAGTGTA AAATCAGTCTCTTTAAATCAAAATCAGACGACTATGGAGCTATGACTACAGAGAATTTAGGAAAATTTAGCCGTGAGACT TGCCTCTACTAGTGTAGGTAGAAATTTTCGGTGTTGAAAAAATAGCACAAGTGTACTGAAATTAAAGGGTTTTGATTCAT TCACCCTATTCTTTCTTTTCTATCTCATTTATACCAATTTTTTCTTCTTTTTCTATCACATCATGAGTCGAATGTTTCAT TTCTTTCTCTTTTTCATTTGAGGGAATGGATCATGAACAAAAACTTATTGAACCTTAAAACAGGGGAATCTGAACATAAT ATTGCACAAAGTCCTGGGAATTACTTTGGGAACCTGAATGCTTTCCACCCACACCACCCAATTAATCATGTTTCTGATCC GAAAAATAATTTCTTTAGTGGGCTGATTGGTGATTCATATAGAAACAACAAGCGGTGCTAAAAAAAAAATATCCCCAAAC TCCTTTTACTACTTTCTTCCCTGCTGTCCCAATTACATCAACACGATTTCAGCCAATTCCTTGCTGATTGTTTTTTTTAG CCTTTGCCTGTAATGCCTTAGG
CDS sequence (LotjaGi1g1v0290300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAGCTGATTGGACCTCGCTTGTACAGCTGCTGTAATTGCAGAAACCATGTCTCTCTCCATGATGATATCATTTC CAAGGCTTTTCAGGGAAAAAATGGCCGAGCTTTTCTGTTTTCCCATGCTATGAATGTTGTGACAGGGCCAAAAGAAGACA GGCATCTCTTGACTGGCCTACACACTGTTGCTGATGTTTATTGCGGTGATTGCCGAGAAGTGCTGGGTTGGAAGTATGAA AGAGCTTATGAAGCATCCCAGAAATACAAGGAAGGAAAATTCATTCTTGAGAAATCAAAAATTGTTAAGGAGAACTGGTA G
Protein sequence (LotjaGi1g1v0290300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELIGPRLYSCCNCRNHVSLHDDIISKAFQGKNGRAFLFSHAMNVVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYE RAYEASQKYKEGKFILEKSKIVKENW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 106 | 104 | 6.3E-70 | – | |
| PANTHER | 3 | 106 | 104 | 6.3E-70 | ||
| ProSiteProfiles | 8 | 105 | 98 | 51.098 | ||
| Pfam | 10 | 102 | 93 | 3.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0290300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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