Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0292600 |
Transcript ID | LotjaGi1g1v0292600.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Yellow stripe-like transporter 1; TAIR: AT5G53550.1 YELLOW STRIPE like 3; Swiss-Prot: sp|Q2EF88|YSL3_ARATH Metal-nicotianamine transporter YSL3; TrEMBL-Plants: tr|A0A0B2QDZ9|A0A0B2QDZ9_GLYSO Metal-nicotianamine transporter YSL3; Found in the gene: LotjaGi1g1v0292600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71006303..71012081) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGTTAATACTACAGCTGAATTGACCTTTCAACATTGAAGGAGTGTGTCTCCCTCCCACCTTCTCCTAACTCCTTTGA CATTTCATACCCCCATGTTTACACCACACGCCTCCATCAAACCTAACATGTACCAGCACACAATACAATAATAACACACC ACATTATTTTCTATTTTTTTCTTTATATTTTTAAATCTAAGACACCATCCGTTATTTTTTCCAACCATTTCCAATCATAT TCTCTGTTCATGAGTCAACGTTGAGTGCCTTAATCTATCAAATAATTTTCAGCCCAACAAATAAGCAAAGGTTATCTGGA AAGTGGGTAGTTCCCCTTTTCAAATTGTAGTACAAACAAAAACTTTAACATCTCAGAAAACTCATTTGTAGTAGTACACA ACCCCACCATTGTACTACAAGTTATTGTAAGAAGACCCTCTTTGGTTGATGATTTAGTTTCTAATGGCAACTATAAAGTT CTCTGCTTTGATGCAAATCCTTTCATGGGTTGTCTCCATTTCTGATACATCAGAAACTTTGCCTTGGTTTTTTAGATTGC AAATTTGTACCGTATTACCTTAATCTTTTGTACCTGGTGTGGTGGAGAATACAATTCTTGAATTGAAGCTTCGTCCCTGT CAGGAAGATTCAGTTTTCCTTTCATAAAAAAAGGGAACTTGAGGTGAGATATTTAATGGGGTTTTGTCTTTTTGACTGGT TATTATTTTAGGAGCCATAAAATCTCTGAACTTTTTCATTGTAGAATGGGATTCTAATTCCTTTTGTTCATCCTCTTTTA TTATTCTCATTTATTGTTTAATATTAGTTTCCTTTATTGCAATGATTGTATTCTATGAGATTTCGTTAGAATTTATTCCC TTTGTATAGCCAGTTTATAAATTGTTCCATAACTTGAACAATTTAGATATGAAATTTGTTCCCTTTGTAAAGTGCAGGAG CTGAAATTTTTTGGCATATTTAAATGTTAATTATTTTTGCCTCTCTTTAATAGATTACCAATTCTATTGTTTTCTTTGCT TTGGTGATTGGTTCAGTTAGAGTTGAGGATTTTGTGAATCCAATGGGTACTATAAGCAGTGAGGATCACAGAGAGATTGA GAATCATGTTAGAGAAGGCACTGAAGAGGCTCCACCTATGCCTGAGGAAGTGAGTAGAATAGCACCATGGGCGAGACAGA TCACGATTCGGGGATTATTTGCTAGCGTCCTCATAGGAGTCATTTACAGTGTGATTGTGATGAAGCTGAACCTCACAACT GGTCTAGTCCCCAATCTCAATGTCTCAGCTGCTCTCCTTGGCTTTGTGTTCATCAGAACATGGACTAAGCTGCTTGAAAA GGCCAATATTGTTTCAACTCCATTCACCAGACAGGAGAATACAGTAATCCAGACTTGCGCGGTTGCTTGCTACAGCATCG CAGTAGGAGGTGAGTCTTTCTCTGCAATTTCTGTGCAGTTTGATGGCTGAATTTAATGCTTAATCTTTAAGTGTGTGCAA AAGACAGTGTGAGAAGTTTGTGTCGGAAATTCCAAGTGTGAGTGATTAAGTTCACATTGGTTAATAATGGGTTAATTAAA TACAATATAAGTGTGAAGACGCATAGACTCATTGCTTTAAGGTTTTGGGTCAAGATGTGGTGTCGGACTCGGATCCAACG ATTTGTTGATCTGAACTTGTGTAATTGTTAGGTGGTTTTGGGTCTTACCTCTTGGGATTGAATAGGAGGACGTATGAGCA AGCAGGGATCGATACAAAAGGGAATGCTCCAAATAGTACCAAGGAACCTGAAGTGGGCTGGATGACAGGCTTTCTCTTTG TGAGCAGCTTTGTAGGGCTATTGGCGCTGGTCCCAATTAGAAAGGTATTTCGTTATTGCAATTAATTTCATGATTTTGCA CAAAATTCATTTAATGCGCGAAGTTTGTTCGCTTAGTAGTTTTTACTGTATGAGTAAATTTGGTTCTTCTTTACTTGAAT GATGTTGCTGAAGAAAGTTGTTGTTTAACAGATCATGATAATAGACTACAAATTAACTTATCCAAGTGGAACTGCTACTG CTGTTCTTATTAACGGGTTTCATACTCCTAAAGGAGATGTTATGGCCAGGTATTATTATTAACCTGTTTTGTTTTGATTT GGTTTGGTTTGTTTTTGCTTCCAAATTTGTTTTGGTATTTTCTTCAAGTTGGGTAAGCTAGGTGAATCTTTATAGAGGCT AAAACTAGTTGAACTCCCTCTGCAGGAAGCAGGTTCACGGTTTCATGAAATTCTTCTCATTCAGCTTCCTCTGGGCTTTC TTCCAGTGGTTCTACACGGGTGGAGATAACTGCGGATTTATTCAATTTCCTACTTTTGGATTGCAAGCATGGAGAAACTC GTGCGTTCCTTTGTTTTTCTTCGACTAATAAAAGTCTCTCAAGTCTCTACCATGAAACAATATTCAAATTGTCACTGATT AAAGCATTTGAATTTGGCAGATTTTACTTCGATTTTAGCATGACTTATGTTGGAGCAGGAATGATTTGTTCCCATCTTGT CAATTTATCCGTGCTTCTTGGGGCTGTTGTTTCATGGGGAATTATGTGGCCCTTAATAAAGGGACTAAAAGGAGAATGGT ACCCTGCAACTATATCAGAAAGTAGCATGAAGAGTCTTAATGGCTATAAGGTTCAAATTTAGCTGAACTAAAGGACGCTA TCAGAGCTAGATTATTTGATTTTAGTTCCTTCAATTTGAAGCCTTGGTTTTTCCCCTTTGCTGCAGGTTTTCATTTCCAT TGCATTGATTCTTGGTGATGGGCTTTACAATTTTGTCAAAGTCGTCTACTTCGCGGTCACAAATATCCGTGCCAACATGA AAAGGAAGAATTTAAATACATGTATGTAAATGGTCCTTATAATTTTTTTTTCCGATTCCTTAGTGGATGTTTGGTACACA ATAGAAAAACATGAGCCAAAATCATGGTGGACTGAAGCAACTTTTATCAGCTTTTGCTTCTGTCCACCATGATTTTGGCT TCACCGTGATTTTCTACCGTGTATCCAAGCACTTATATGACTATGGATTATAGACTATTAGGTAGGCTATAAAGCTGCAT TTGGTGTTTAGCCAACCAGAAATTGATCCAATATGAAGTGGTTTATGTCTTTATGATATCTTTGAATTTGAAATATGTCT GTAGAATCTAACATTTCTTCATTACCGCAGTTCTGGATAACCAGAAACAACTTCCTCTCGATGACCTTAGACGGAACGAA GTTTTTACAAGAGAAAGCATTCCCCTATGGTTGGCATGTGCAGGGTACATCTTTTTCTCCATCATTTCCGCCATTGTAAT CCCTTTGATGTTTCCTCAGTTGAAGTGGTATTATGTGGTGTTTGCCTATCTTTTTGCACCATCTCTCGGCTTCTGCAATG CTTACGGCGCAGGCTTAACCGACATGAACATGGCCTACAACTACGGGAAAGTGGCTCTTTTTGTGCTTGCAGCCTTGGCC GGGAAAAACGATGGCGTAGTTGCTGGTCTCGTAGGGTGTGGCCTGATCAAATCCATTGTTTCCATTTCATCTGATTTGAT GCATGATTTCAAGACCGGCCATCTCACATTCACTTCGCCTCGCGCGATGCTTGTGAGCCAAGCTATCGGGACCGCAATAG GCTGTGTTGTTGCTCCTCTCACATTCTTCCTTTTTTACAAGGCTTTCGATGTGGGGAACCCGGACGGAGTTTACAAGGCT CCATATGCCATCATATATAGAAACATGGCAATTCTTGGCGTGCAAGGGTTTTCCGCGCTTCCTCACCATTGCCTGCAGCT CTGTTATGGATTCTTCGCGTTTGCTATAGCAGCCAACTTGGTGAGAGATATTAGCCCTAGAAAGTTCGGGAGATGGGTTC CACTTCCAATGGCGATGGCTGTGCCTTTCCTAGTTGGTGGTTACTTTGCCATTGACATGTGTATGGGAAGTTTGATTGTG TTTGCCTGGCATAAACTGAACAAAAATGAGGCGGGTTTGATGGTTCCTGCAGTTGCTTCTGGGTTGATTTGTGGAGATGG AATGTGGATTCTCCCTTCATCCATTCTTGCTTTGCTAAAGGTTCGTCCCCCAATCTGCATGAGCTTCTTTCCATCAAGGT AGAAAGTTCACACTTGTAGAGATCAGAGGAATTAGATGCAGTCAAGTAAAGTGTATGTTTGTTTTGGGGATAGATAACAC AAACGTGATTTCGCGTAGCTCAAGATATCAACGAAAAAACTAGAATTTGTCATGTTGGGTTTAACGTGAATCGGAGAAGT AAGATATTAACATGTTTACTTCAATGTGGATTCACGTTAAGTTCAATGGAAATGCACGTTAAGATAATTATGGGTTTAAT GTCCTAGGAGGCTTGCTTGTGAGCAATTCTTATTCAAAAATAGGATCTATGATCATATGTAATTCCACGTCAATTAGCTA TTGAAGAATTAGTATAGAAATTTTATACAGAACTACTATGAGTCTATGACAGATTTTATACATATTTTCATTTAGTGACT GACCAATTCGACGACAAATGGGTAAAAGTGAACAACTGAACATACTCAAATTTGTGTCATTTTAAAGGTAATCTTACCAA TCAACACAGAGTTATTCTAGTTTAAGCAGAAATCTCGCTTAAGAAGAGACTATGGATTTAACCAATTACAGAAGTTAAAA ATATGATAGAAAAGCCTTGATACACTGCCTAACCTTCCTTGCAATACTGCAGTCTTATAAGATTATGACTTCTGAATTTC TTTCCACGAGAAACAACCCATATTGGACCAGCTTGTCACTTTTTTCACATTCAAGCTTTCACAACTGAATTTAGATAATA TGGAAAACTGAAACATATCCTTACATTATGGTGCTTCAAAAGGGTTGTCTAAATAATCCTTGATTAAAATTGGGTTAAAT AACCTAATGATGAAGTGTTCCAATAATAATGTAACATGTGTTTTTATAATTTCCAAATCATTTGATTATTTTATTTTATT CTTTATTTTATAATATTCACTTTATTAAGAGTTAAATACGTTTTTAGTCCATAAACTATCATGAATTATTGGTATTCACC CTCTATCTCTCTGACCTTCATCCTCTCCTTCTGAATCCCACAGATCTGAGAAATCCCTGTACCCAAAACATTAAAGTTTA CGATCTGTATGATGTGATGGCGACTCATGCGAGGGCTGGTTCGATGGCGATTTCTGGTGCGATGTTCGTGGGTTGCGTGT GGTTCCAGAGACTTGGTGGTGTTCTTCCTCTGTTCTGGCATTCAATTGCTTAGAGCGTTCTTCAATTTGGGGGGAAATTT TTTGTAAAGAGTTTCTTCCCTCTTATTTAATTTGTGGAATCTCATTTAAATTTTTGGGTAATGGCATATCAAATTGACAC TCCAACATTTCTACTTGGGGAGTAAGTGTTCAGATGTGAATATTAGTGCAATTTCATGATCACATAATTCTCTTTCTCAT TTTTTAATCCCAGATTTTGTTTTCGTTTTCTTCTCTAGAATGATGCCTTCTTCTTTGATTTTGAATTTGGCTCATAATTA ATTAGCTAGGAATTCTTTGTGATCAAGTGAACTAGTTTTTTAAGTCCATTTCTGATATGCCATGCATTGCCCAACAATTT TTTATGAGTCAAAACAAACACTATATTTTCTTATGTATTCCCCGTTTCCGGATCAATTTTTTTTCTGTAAAAAAACACTA ACATAATAACATTTCCAGG
CDS sequence (LotjaGi1g1v0292600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACTATAAGCAGTGAGGATCACAGAGAGATTGAGAATCATGTTAGAGAAGGCACTGAAGAGGCTCCACCTATGCC TGAGGAAGTGAGTAGAATAGCACCATGGGCGAGACAGATCACGATTCGGGGATTATTTGCTAGCGTCCTCATAGGAGTCA TTTACAGTGTGATTGTGATGAAGCTGAACCTCACAACTGGTCTAGTCCCCAATCTCAATGTCTCAGCTGCTCTCCTTGGC TTTGTGTTCATCAGAACATGGACTAAGCTGCTTGAAAAGGCCAATATTGTTTCAACTCCATTCACCAGACAGGAGAATAC AGTAATCCAGACTTGCGCGGTTGCTTGCTACAGCATCGCAGTAGGAGGTGGTTTTGGGTCTTACCTCTTGGGATTGAATA GGAGGACGTATGAGCAAGCAGGGATCGATACAAAAGGGAATGCTCCAAATAGTACCAAGGAACCTGAAGTGGGCTGGATG ACAGGCTTTCTCTTTGTGAGCAGCTTTGTAGGGCTATTGGCGCTGGTCCCAATTAGAAAGATCATGATAATAGACTACAA ATTAACTTATCCAAGTGGAACTGCTACTGCTGTTCTTATTAACGGGTTTCATACTCCTAAAGGAGATGTTATGGCCAGGA AGCAGGTTCACGGTTTCATGAAATTCTTCTCATTCAGCTTCCTCTGGGCTTTCTTCCAGTGGTTCTACACGGGTGGAGAT AACTGCGGATTTATTCAATTTCCTACTTTTGGATTGCAAGCATGGAGAAACTCATTTTACTTCGATTTTAGCATGACTTA TGTTGGAGCAGGAATGATTTGTTCCCATCTTGTCAATTTATCCGTGCTTCTTGGGGCTGTTGTTTCATGGGGAATTATGT GGCCCTTAATAAAGGGACTAAAAGGAGAATGGTACCCTGCAACTATATCAGAAAGTAGCATGAAGAGTCTTAATGGCTAT AAGGTTTTCATTTCCATTGCATTGATTCTTGGTGATGGGCTTTACAATTTTGTCAAAGTCGTCTACTTCGCGGTCACAAA TATCCGTGCCAACATGAAAAGGAAGAATTTAAATACATTTCTGGATAACCAGAAACAACTTCCTCTCGATGACCTTAGAC GGAACGAAGTTTTTACAAGAGAAAGCATTCCCCTATGGTTGGCATGTGCAGGGTACATCTTTTTCTCCATCATTTCCGCC ATTGTAATCCCTTTGATGTTTCCTCAGTTGAAGTGGTATTATGTGGTGTTTGCCTATCTTTTTGCACCATCTCTCGGCTT CTGCAATGCTTACGGCGCAGGCTTAACCGACATGAACATGGCCTACAACTACGGGAAAGTGGCTCTTTTTGTGCTTGCAG CCTTGGCCGGGAAAAACGATGGCGTAGTTGCTGGTCTCGTAGGGTGTGGCCTGATCAAATCCATTGTTTCCATTTCATCT GATTTGATGCATGATTTCAAGACCGGCCATCTCACATTCACTTCGCCTCGCGCGATGCTTGTGAGCCAAGCTATCGGGAC CGCAATAGGCTGTGTTGTTGCTCCTCTCACATTCTTCCTTTTTTACAAGGCTTTCGATGTGGGGAACCCGGACGGAGTTT ACAAGGCTCCATATGCCATCATATATAGAAACATGGCAATTCTTGGCGTGCAAGGGTTTTCCGCGCTTCCTCACCATTGC CTGCAGCTCTGTTATGGATTCTTCGCGTTTGCTATAGCAGCCAACTTGGTGAGAGATATTAGCCCTAGAAAGTTCGGGAG ATGGGTTCCACTTCCAATGGCGATGGCTGTGCCTTTCCTAGTTGGTGGTTACTTTGCCATTGACATGTGTATGGGAAGTT TGATTGTGTTTGCCTGGCATAAACTGAACAAAAATGAGGCGGGTTTGATGGTTCCTGCAGTTGCTTCTGGGTTGATTTGT GGAGATGGAATGTGGATTCTCCCTTCATCCATTCTTGCTTTGCTAAAGGTTCGTCCCCCAATCTGCATGAGCTTCTTTCC ATCAAGGTAG
Protein sequence (LotjaGi1g1v0292600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTISSEDHREIENHVREGTEEAPPMPEEVSRIAPWARQITIRGLFASVLIGVIYSVIVMKLNLTTGLVPNLNVSAALLG FVFIRTWTKLLEKANIVSTPFTRQENTVIQTCAVACYSIAVGGGFGSYLLGLNRRTYEQAGIDTKGNAPNSTKEPEVGWM TGFLFVSSFVGLLALVPIRKIMIIDYKLTYPSGTATAVLINGFHTPKGDVMARKQVHGFMKFFSFSFLWAFFQWFYTGGD NCGFIQFPTFGLQAWRNSFYFDFSMTYVGAGMICSHLVNLSVLLGAVVSWGIMWPLIKGLKGEWYPATISESSMKSLNGY KVFISIALILGDGLYNFVKVVYFAVTNIRANMKRKNLNTFLDNQKQLPLDDLRRNEVFTRESIPLWLACAGYIFFSIISA IVIPLMFPQLKWYYVVFAYLFAPSLGFCNAYGAGLTDMNMAYNYGKVALFVLAALAGKNDGVVAGLVGCGLIKSIVSISS DLMHDFKTGHLTFTSPRAMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGVYKAPYAIIYRNMAILGVQGFSALPHHC LQLCYGFFAFAIAANLVRDISPRKFGRWVPLPMAMAVPFLVGGYFAIDMCMGSLIVFAWHKLNKNEAGLMVPAVASGLIC GDGMWILPSSILALLKVRPPICMSFFPSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 39 | 39 | - | – | |
MobiDBLite | 1 | 28 | 28 | - | – | |
MobiDBLite | 1 | 25 | 25 | - | – | |
PANTHER | 9 | 667 | 659 | 0.0 | – | |
PANTHER | 9 | 667 | 659 | 0.0 | – | |
TIGRFAM | 34 | 649 | 616 | 7.4E-113 | ||
Pfam | 39 | 652 | 614 | 1.5E-137 | ||
Phobius | 40 | 62 | 23 | - | – | |
TMHMM | 41 | 60 | 20 | - | – | |
Phobius | 63 | 67 | 5 | - | – | |
TMHMM | 65 | 87 | 23 | - | – | |
Phobius | 68 | 87 | 20 | - | – | |
Phobius | 88 | 107 | 20 | - | – | |
Phobius | 108 | 130 | 23 | - | – | |
TMHMM | 108 | 130 | 23 | - | – | |
Phobius | 131 | 156 | 26 | - | – | |
Phobius | 157 | 178 | 22 | - | – | |
TMHMM | 157 | 179 | 23 | - | – | |
Phobius | 179 | 218 | 40 | - | – | |
Phobius | 219 | 237 | 19 | - | – | |
Phobius | 238 | 256 | 19 | - | – | |
Phobius | 257 | 273 | 17 | - | – | |
Phobius | 274 | 279 | 6 | - | – | |
TMHMM | 275 | 297 | 23 | - | – | |
Phobius | 280 | 297 | 18 | - | – | |
Phobius | 298 | 321 | 24 | - | – | |
Phobius | 322 | 345 | 24 | - | – | |
TMHMM | 323 | 345 | 23 | - | – | |
Phobius | 346 | 382 | 37 | - | – | |
Phobius | 383 | 406 | 24 | - | – | |
TMHMM | 385 | 407 | 23 | - | – | |
Phobius | 407 | 411 | 5 | - | – | |
TMHMM | 412 | 434 | 23 | - | – | |
Phobius | 412 | 433 | 22 | - | – | |
Phobius | 434 | 439 | 6 | - | – | |
Phobius | 440 | 456 | 17 | - | – | |
Phobius | 457 | 461 | 5 | - | – | |
Phobius | 462 | 479 | 18 | - | – | |
Phobius | 480 | 499 | 20 | - | – | |
TMHMM | 500 | 522 | 23 | - | – | |
Phobius | 500 | 522 | 23 | - | – | |
Phobius | 523 | 555 | 33 | - | – | |
TMHMM | 555 | 577 | 23 | - | – | |
Phobius | 556 | 577 | 22 | - | – | |
Phobius | 578 | 596 | 19 | - | – | |
TMHMM | 596 | 618 | 23 | - | – | |
Phobius | 597 | 619 | 23 | - | – | |
Phobius | 620 | 630 | 11 | - | – | |
Phobius | 631 | 655 | 25 | - | – | |
TMHMM | 633 | 655 | 23 | - | – | |
Phobius | 656 | 669 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0292600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…