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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0292600 |
| Transcript ID | LotjaGi1g1v0292600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Yellow stripe-like transporter 1; TAIR: AT5G53550.1 YELLOW STRIPE like 3; Swiss-Prot: sp|Q2EF88|YSL3_ARATH Metal-nicotianamine transporter YSL3; TrEMBL-Plants: tr|A0A0B2QDZ9|A0A0B2QDZ9_GLYSO Metal-nicotianamine transporter YSL3; Found in the gene: LotjaGi1g1v0292600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71007316..71010464) extracted from Lotus japonicus Gifu genome v1.2.
ATTACCAATTCTATTGTTTTCTTTGCTTTGGTGATTGGTTCAGTTAGAGTTGAGGATTTTGTGAATCCAATGGGTACTAT AAGCAGTGAGGATCACAGAGAGATTGAGAATCATGTTAGAGAAGGCACTGAAGAGGCTCCACCTATGCCTGAGGAAGTGA GTAGAATAGCACCATGGGCGAGACAGATCACGATTCGGGGATTATTTGCTAGCGTCCTCATAGGAGTCATTTACAGTGTG ATTGTGATGAAGCTGAACCTCACAACTGGTCTAGTCCCCAATCTCAATGTCTCAGCTGCTCTCCTTGGCTTTGTGTTCAT CAGAACATGGACTAAGCTGCTTGAAAAGGCCAATATTGTTTCAACTCCATTCACCAGACAGGAGAATACAGTAATCCAGA CTTGCGCGGTTGCTTGCTACAGCATCGCAGTAGGAGGTGAGTCTTTCTCTGCAATTTCTGTGCAGTTTGATGGCTGAATT TAATGCTTAATCTTTAAGTGTGTGCAAAAGACAGTGTGAGAAGTTTGTGTCGGAAATTCCAAGTGTGAGTGATTAAGTTC ACATTGGTTAATAATGGGTTAATTAAATACAATATAAGTGTGAAGACGCATAGACTCATTGCTTTAAGGTTTTGGGTCAA GATGTGGTGTCGGACTCGGATCCAACGATTTGTTGATCTGAACTTGTGTAATTGTTAGGTGGTTTTGGGTCTTACCTCTT GGGATTGAATAGGAGGACGTATGAGCAAGCAGGGATCGATACAAAAGGGAATGCTCCAAATAGTACCAAGGAACCTGAAG TGGGCTGGATGACAGGCTTTCTCTTTGTGAGCAGCTTTGTAGGGCTATTGGCGCTGGTCCCAATTAGAAAGGTATTTCGT TATTGCAATTAATTTCATGATTTTGCACAAAATTCATTTAATGCGCGAAGTTTGTTCGCTTAGTAGTTTTTACTGTATGA GTAAATTTGGTTCTTCTTTACTTGAATGATGTTGCTGAAGAAAGTTGTTGTTTAACAGATCATGATAATAGACTACAAAT TAACTTATCCAAGTGGAACTGCTACTGCTGTTCTTATTAACGGGTTTCATACTCCTAAAGGAGATGTTATGGCCAGGTAT TATTATTAACCTGTTTTGTTTTGATTTGGTTTGGTTTGTTTTTGCTTCCAAATTTGTTTTGGTATTTTCTTCAAGTTGGG TAAGCTAGGTGAATCTTTATAGAGGCTAAAACTAGTTGAACTCCCTCTGCAGGAAGCAGGTTCACGGTTTCATGAAATTC TTCTCATTCAGCTTCCTCTGGGCTTTCTTCCAGTGGTTCTACACGGGTGGAGATAACTGCGGATTTATTCAATTTCCTAC TTTTGGATTGCAAGCATGGAGAAACTCGTGCGTTCCTTTGTTTTTCTTCGACTAATAAAAGTCTCTCAAGTCTCTACCAT GAAACAATATTCAAATTGTCACTGATTAAAGCATTTGAATTTGGCAGATTTTACTTCGATTTTAGCATGACTTATGTTGG AGCAGGAATGATTTGTTCCCATCTTGTCAATTTATCCGTGCTTCTTGGGGCTGTTGTTTCATGGGGAATTATGTGGCCCT TAATAAAGGGACTAAAAGGAGAATGGTACCCTGCAACTATATCAGAAAGTAGCATGAAGAGTCTTAATGGCTATAAGGTT CAAATTTAGCTGAACTAAAGGACGCTATCAGAGCTAGATTATTTGATTTTAGTTCCTTCAATTTGAAGCCTTGGTTTTTC CCCTTTGCTGCAGGTTTTCATTTCCATTGCATTGATTCTTGGTGATGGGCTTTACAATTTTGTCAAAGTCGTCTACTTCG CGGTCACAAATATCCGTGCCAACATGAAAAGGAAGAATTTAAATACATGTATGTAAATGGTCCTTATAATTTTTTTTTCC GATTCCTTAGTGGATGTTTGGTACACAATAGAAAAACATGAGCCAAAATCATGGTGGACTGAAGCAACTTTTATCAGCTT TTGCTTCTGTCCACCATGATTTTGGCTTCACCGTGATTTTCTACCGTGTATCCAAGCACTTATATGACTATGGATTATAG ACTATTAGGTAGGCTATAAAGCTGCATTTGGTGTTTAGCCAACCAGAAATTGATCCAATATGAAGTGGTTTATGTCTTTA TGATATCTTTGAATTTGAAATATGTCTGTAGAATCTAACATTTCTTCATTACCGCAGTTCTGGATAACCAGAAACAACTT CCTCTCGATGACCTTAGACGGAACGAAGTTTTTACAAGAGAAAGCATTCCCCTATGGTTGGCATGTGCAGGGTACATCTT TTTCTCCATCATTTCCGCCATTGTAATCCCTTTGATGTTTCCTCAGTTGAAGTGGTATTATGTGGTGTTTGCCTATCTTT TTGCACCATCTCTCGGCTTCTGCAATGCTTACGGCGCAGGCTTAACCGACATGAACATGGCCTACAACTACGGGAAAGTG GCTCTTTTTGTGCTTGCAGCCTTGGCCGGGAAAAACGATGGCGTAGTTGCTGGTCTCGTAGGGTGTGGCCTGATCAAATC CATTGTTTCCATTTCATCTGATTTGATGCATGATTTCAAGACCGGCCATCTCACATTCACTTCGCCTCGCGCGATGCTTG TGAGCCAAGCTATCGGGACCGCAATAGGCTGTGTTGTTGCTCCTCTCACATTCTTCCTTTTTTACAAGGCTTTCGATGTG GGGAACCCGGACGGAGTTTACAAGGCTCCATATGCCATCATATATAGAAACATGGCAATTCTTGGCGTGCAAGGGTTTTC CGCGCTTCCTCACCATTGCCTGCAGCTCTGTTATGGATTCTTCGCGTTTGCTATAGCAGCCAACTTGGTGAGAGATATTA GCCCTAGAAAGTTCGGGAGATGGGTTCCACTTCCAATGGCGATGGCTGTGCCTTTCCTAGTTGGTGGTTACTTTGCCATT GACATGTGTATGGGAAGTTTGATTGTGTTTGCCTGGCATAAACTGAACAAAAATGAGGCGGGTTTGATGGTTCCTGCAGT TGCTTCTGGGTTGATTTGTGGAGATGGAATGTGGATTCTCCCTTCATCCATTCTTGCTTTGCTAAAGGTTCGTCCCCCAA TCTGCATGAGCTTCTTTCCATCAAGGTAG
CDS sequence (LotjaGi1g1v0292600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACTATAAGCAGTGAGGATCACAGAGAGATTGAGAATCATGTTAGAGAAGGCACTGAAGAGGCTCCACCTATGCC TGAGGAAGTGAGTAGAATAGCACCATGGGCGAGACAGATCACGATTCGGGGATTATTTGCTAGCGTCCTCATAGGAGTCA TTTACAGTGTGATTGTGATGAAGCTGAACCTCACAACTGGTCTAGTCCCCAATCTCAATGTCTCAGCTGCTCTCCTTGGC TTTGTGTTCATCAGAACATGGACTAAGCTGCTTGAAAAGGCCAATATTGTTTCAACTCCATTCACCAGACAGGAGAATAC AGTAATCCAGACTTGCGCGGTTGCTTGCTACAGCATCGCAGTAGGAGGTGGTTTTGGGTCTTACCTCTTGGGATTGAATA GGAGGACGTATGAGCAAGCAGGGATCGATACAAAAGGGAATGCTCCAAATAGTACCAAGGAACCTGAAGTGGGCTGGATG ACAGGCTTTCTCTTTGTGAGCAGCTTTGTAGGGCTATTGGCGCTGGTCCCAATTAGAAAGATCATGATAATAGACTACAA ATTAACTTATCCAAGTGGAACTGCTACTGCTGTTCTTATTAACGGGTTTCATACTCCTAAAGGAGATGTTATGGCCAGGA AGCAGGTTCACGGTTTCATGAAATTCTTCTCATTCAGCTTCCTCTGGGCTTTCTTCCAGTGGTTCTACACGGGTGGAGAT AACTGCGGATTTATTCAATTTCCTACTTTTGGATTGCAAGCATGGAGAAACTCATTTTACTTCGATTTTAGCATGACTTA TGTTGGAGCAGGAATGATTTGTTCCCATCTTGTCAATTTATCCGTGCTTCTTGGGGCTGTTGTTTCATGGGGAATTATGT GGCCCTTAATAAAGGGACTAAAAGGAGAATGGTACCCTGCAACTATATCAGAAAGTAGCATGAAGAGTCTTAATGGCTAT AAGGTTTTCATTTCCATTGCATTGATTCTTGGTGATGGGCTTTACAATTTTGTCAAAGTCGTCTACTTCGCGGTCACAAA TATCCGTGCCAACATGAAAAGGAAGAATTTAAATACATTTCTGGATAACCAGAAACAACTTCCTCTCGATGACCTTAGAC GGAACGAAGTTTTTACAAGAGAAAGCATTCCCCTATGGTTGGCATGTGCAGGGTACATCTTTTTCTCCATCATTTCCGCC ATTGTAATCCCTTTGATGTTTCCTCAGTTGAAGTGGTATTATGTGGTGTTTGCCTATCTTTTTGCACCATCTCTCGGCTT CTGCAATGCTTACGGCGCAGGCTTAACCGACATGAACATGGCCTACAACTACGGGAAAGTGGCTCTTTTTGTGCTTGCAG CCTTGGCCGGGAAAAACGATGGCGTAGTTGCTGGTCTCGTAGGGTGTGGCCTGATCAAATCCATTGTTTCCATTTCATCT GATTTGATGCATGATTTCAAGACCGGCCATCTCACATTCACTTCGCCTCGCGCGATGCTTGTGAGCCAAGCTATCGGGAC CGCAATAGGCTGTGTTGTTGCTCCTCTCACATTCTTCCTTTTTTACAAGGCTTTCGATGTGGGGAACCCGGACGGAGTTT ACAAGGCTCCATATGCCATCATATATAGAAACATGGCAATTCTTGGCGTGCAAGGGTTTTCCGCGCTTCCTCACCATTGC CTGCAGCTCTGTTATGGATTCTTCGCGTTTGCTATAGCAGCCAACTTGGTGAGAGATATTAGCCCTAGAAAGTTCGGGAG ATGGGTTCCACTTCCAATGGCGATGGCTGTGCCTTTCCTAGTTGGTGGTTACTTTGCCATTGACATGTGTATGGGAAGTT TGATTGTGTTTGCCTGGCATAAACTGAACAAAAATGAGGCGGGTTTGATGGTTCCTGCAGTTGCTTCTGGGTTGATTTGT GGAGATGGAATGTGGATTCTCCCTTCATCCATTCTTGCTTTGCTAAAGGTTCGTCCCCCAATCTGCATGAGCTTCTTTCC ATCAAGGTAG
Protein sequence (LotjaGi1g1v0292600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTISSEDHREIENHVREGTEEAPPMPEEVSRIAPWARQITIRGLFASVLIGVIYSVIVMKLNLTTGLVPNLNVSAALLG FVFIRTWTKLLEKANIVSTPFTRQENTVIQTCAVACYSIAVGGGFGSYLLGLNRRTYEQAGIDTKGNAPNSTKEPEVGWM TGFLFVSSFVGLLALVPIRKIMIIDYKLTYPSGTATAVLINGFHTPKGDVMARKQVHGFMKFFSFSFLWAFFQWFYTGGD NCGFIQFPTFGLQAWRNSFYFDFSMTYVGAGMICSHLVNLSVLLGAVVSWGIMWPLIKGLKGEWYPATISESSMKSLNGY KVFISIALILGDGLYNFVKVVYFAVTNIRANMKRKNLNTFLDNQKQLPLDDLRRNEVFTRESIPLWLACAGYIFFSIISA IVIPLMFPQLKWYYVVFAYLFAPSLGFCNAYGAGLTDMNMAYNYGKVALFVLAALAGKNDGVVAGLVGCGLIKSIVSISS DLMHDFKTGHLTFTSPRAMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGVYKAPYAIIYRNMAILGVQGFSALPHHC LQLCYGFFAFAIAANLVRDISPRKFGRWVPLPMAMAVPFLVGGYFAIDMCMGSLIVFAWHKLNKNEAGLMVPAVASGLIC GDGMWILPSSILALLKVRPPICMSFFPSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | - | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 9 | 667 | 659 | 0.0 | – | |
| PANTHER | 9 | 667 | 659 | 0.0 | – | |
| TIGRFAM | 34 | 649 | 616 | 7.4E-113 | ||
| Pfam | 39 | 652 | 614 | 1.5E-137 | ||
| Phobius | 40 | 62 | 23 | - | – | |
| TMHMM | 41 | 60 | 20 | - | – | |
| Phobius | 63 | 67 | 5 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 68 | 87 | 20 | - | – | |
| Phobius | 88 | 107 | 20 | - | – | |
| Phobius | 108 | 130 | 23 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 131 | 156 | 26 | - | – | |
| Phobius | 157 | 178 | 22 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 179 | 218 | 40 | - | – | |
| Phobius | 219 | 237 | 19 | - | – | |
| Phobius | 238 | 256 | 19 | - | – | |
| Phobius | 257 | 273 | 17 | - | – | |
| Phobius | 274 | 279 | 6 | - | – | |
| TMHMM | 275 | 297 | 23 | - | – | |
| Phobius | 280 | 297 | 18 | - | – | |
| Phobius | 298 | 321 | 24 | - | – | |
| Phobius | 322 | 345 | 24 | - | – | |
| TMHMM | 323 | 345 | 23 | - | – | |
| Phobius | 346 | 382 | 37 | - | – | |
| Phobius | 383 | 406 | 24 | - | – | |
| TMHMM | 385 | 407 | 23 | - | – | |
| Phobius | 407 | 411 | 5 | - | – | |
| TMHMM | 412 | 434 | 23 | - | – | |
| Phobius | 412 | 433 | 22 | - | – | |
| Phobius | 434 | 439 | 6 | - | – | |
| Phobius | 440 | 456 | 17 | - | – | |
| Phobius | 457 | 461 | 5 | - | – | |
| Phobius | 462 | 479 | 18 | - | – | |
| Phobius | 480 | 499 | 20 | - | – | |
| TMHMM | 500 | 522 | 23 | - | – | |
| Phobius | 500 | 522 | 23 | - | – | |
| Phobius | 523 | 555 | 33 | - | – | |
| TMHMM | 555 | 577 | 23 | - | – | |
| Phobius | 556 | 577 | 22 | - | – | |
| Phobius | 578 | 596 | 19 | - | – | |
| TMHMM | 596 | 618 | 23 | - | – | |
| Phobius | 597 | 619 | 23 | - | – | |
| Phobius | 620 | 630 | 11 | - | – | |
| Phobius | 631 | 655 | 25 | - | – | |
| TMHMM | 633 | 655 | 23 | - | – | |
| Phobius | 656 | 669 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0292600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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