Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0301700 |
| Transcript ID | LotjaGi1g1v0301700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SPFH domain/band 7 family protein; TAIR: AT4G27585.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|O60121|YH77_SCHPO Uncharacterized protein C16G5.07c; TrEMBL-Plants: tr|V7AVV9|V7AVV9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0301700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:73555266..73562154) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGCTAGGGCTTTAGTAAACACCAAAAAGAATAGTAAAAAGAAAAAATTCTAAGATTGAAGAACACGAAAGGAGTGA ACAATAAGGAAGGGGTTGTTGTTGTTGTTGTTGTTGTCGCACCGTTGCAGTTGAAGACAGCAGTAATGGCGAGCATTTGG AAAACCCGAACCGCAGTTCGTAGTTTGACCCAATCCTTAGCAGCCGCCACTCACCACCACACGCCGTCGCTCCCCTCTCG TCTCTCCTCCGTCCGCCACCTCCGCTCCGGTCGAGATCCTATCTCCAGGTCAGTCAATCGATTTCACTGCCAGAACAGAA ACTAAGCATTTTTATTGATTGATTGAATTTGAATTTTTGTTCAGGAATCATGAAATTATTCCTCCGGTGAACTGGGGGAT TCGGATTGTGCCGGAGAAGAAAGCGTTTGTCATCGAGCGATTTGGAAAGTATGCCAAGACGCTTCCCTCCGGCATCCATT TCTTGATCCCGTTCGTCGATAAGATTGCTTATGTGCATTCTCTTAAGGAAGAGGCGATTAGTATTCCTGACCAGTCTGCT ATCACCAAGGATAATGTTACTATCCTCATTGATGGTGTGCTTTATGTCAAGGTGTGTTAAACTTTCTTGTATTGTAGTTG TGTTATTTGCCCTTTTTTTTCGTCGAGTGGTTTGTGGTTTGATGCTATTTTTGTCTGGATTACTGCAGATTGTGGATCCT AAGCTGGCATCTTATGGGGTTGAGAATCCCATTTACGCGGTTATTCAGCTGGCTCAGACGACAATGCGTAGTGAGCTTGG TAAGATTACCCTTGACAAGACCTTTGAGGAAAGGGACACGCTCAATGAAAAGATTGTGGTGAGTTTAGCTCTTTGAACTT ATTCTGTTTGGATTTGTTGTGTGTGTGTGTTTGTCATTTTTGCTCTGGTTCTCATTTAAGGAAGCGATTTTGCTACTTCA ATTTCATGTCATATTTGAAATCTTCTTGTTGGAAGTCTTGGATTACCAGAATGTAGGTTAGTTCTGAAAAGAATTTGGCT CTTAGATGGAGCTACTACTCGAATTTGGTGGAAAGGATGCTCTGTAAAACATTTAATTTAACAGTCCTTCTTGATGCTCA AACTGGTTGGTATTTGGCTCTTAGATGGAGCCACAACGTTCACAACGCCTTATCAATTTGACATCAACAACAAAGCATTT TCTCATTAGATGGATTGGCTAAGTTCACATATGACCATTTACCCCTAACTATTGAGCTATCCTCGATCTAGTAAACTCTT ACCGGTGCTTCTACAGGACTTTCCCATAAATGCCCAAATCACATATGACAAGATTCTTCCTTTTGTTTTTTGGCAATCAG CGTTAGAAATATAGTATAAAACCATTCATGTGTCTTCACCTAACAAGTTAAACTTTTAAGGTAGTTGGTTCATGACAGAG AGCTACCTCAACTTTCTATTTGATTGTTGTATTCTTAATCTTACCTTGTCTCGTCCATCAAAACATTCTCATGTTTGCGA TGTTAAACTTATTTTGTTGTTGGTTTTAAACTTCCCAGCACTTAAGCCCATACCATAACCGTATCATTGCAGTTTTTATA GCTTTGCGGTAACTTTTTCCTATAAGCTTGAGTGGTACTTTGTTATTGCAGACCACACTCAAAATGAAGGCCGGTTTGAG CAAATTGGCCTTCATTTCGTCCACTCTACACATATCTTATGCTTGACATCTCCCTCTATCCCCTCTTCATTTTGTGTGGT AGACCCAACATTCTTGAAATATGAGACTTGTGTTGTTGCATGTTCTCCGATTTTCATCACTAAGTTAGGACTTGTGTGTC TCTTGCCAAACTTGCATTCCACAGACTGCTTCACTTTTACTTAGATGGAAGCAAGACTTGTCTTCACATCTCTAACTTTT CATTTATGTCTTCTATCAACTTTCCAACTGAGACTATGTGTATGTTTGGTTTCTGAATGTGAAAGTTGGTTCACTCAATG GAAGAAATTCTTCATTTCACATTGAGGTTCATTGGAGATCGAGAATGTGTATTACGAGGCACCCAAGCGTTGTTGTAATT GAAAACCTAAAACACCCATATCATCAGCAAAAGGCATGCATGGTGGGATCATTTTCTGGATATGTTTAATGAATACGTCA ATAATAAAATGATAAAAGTTCAAAGTTGACCCTGAGTGCATACCTATTGTTATAGAGAATTCAACTTCAACATCAAATCA GAATGATTATTCATCAAGTCTTGAGTCTGACCTTGAACATGAGTGCAAACTTGAATCTGGGCAGTAAAAGCATTAATCTC CAACGTCACATGCATAATGTCAAGTTTTTTTTTTTTTGTGTGTAGAAGGAACCAAATGCAACTTCACTTTTCAAGTTAGT TTACATTGAGGAGTTTGTAAGAACTCTGAATTTACATGTTATGTGATTGGTTTTAGTTTCACATTTTCCTCAATCATTAG AGATGATTTCAGTGGATATTCAAATTACTCCTATATGTGTGGCAAATTACATCTAGTAGTGCCTTTAATAGTATTTGGGT CATTCTTGTAATTTGAACTTAAAAATAAGAATGCCGACATACTGATCAATGTTATCAATGGCGGATGGCGGTCCATGGCG GAAAACCAAAACAACACCATAAAAATATGGCGGACGCCATGGCGAATTGTGGCGGAAGCATGGCGGCCATAATATAAATA ATATAATATAATGTATATACAAAAGCCTATAAAACAAGCGTCCCAAAAATTATTGGCTTTTGTACCCTCCCTTCATAATT TTTGCACATTAATTGCATCCAACGTCATTAGTATCATCTTCTTTCAAAGGATGACAGTACTTCCACCCTGGATTAGTTTT GTTATTCCTTGAAGAAGCTTGTGATGAAGCTCCATCACTTACCATGTTAAGGAGGAGAGGAGAGAAGGGCTGGAAAGTGA ATATAAACGGAAGAGAGAAATAAAAACAGGGTCTAAACTCATGAAGAAAAAGGGAAAGGGTCAAGGGAAACAAAACAGAG GCTCACCAAAGGGAGGTCGCCGGACTAGTCGCCGGAGAGGGTGGAGCTTGATGGGGAGGGATGACGTGTTGGAGAGGCAG AGAGCAACATCCTTTGAAGTTTGAATGAACAAGAAGAAGAATAGAGGCTGGGGTGCTTCTAAAGGGGTTTTGAGTGGTTT GGTTAGATTCTAAATGGGTATGGGCCGGGTCATACGAAAAAATTGGCTTTTTTGTTCCAAGGTCCCAAAAATCCGCCATG ACATGTTTTTTTCATGGCGGTCCGCCTAAAACCGCCACGTGATACCGCCATTGGACAACACTGATACTAATTGGTTGGAG GGGGGGATTTTTTTTTTTAACTTGTTTTTTTTCTCCTAAGGTTCTTATCACTCCCCTCCCCTCATGAACCAATCAAGAAG GGGTTATTTCCCCTCCCCTCCTCTCCTCTTAAGTCTTAACTAAAAATGATCAAAGTTAAATCCCTCCCCTCTGTTGAACC AAACACACCCTTAGTTTAAAATATAGAAACTGATAAACCCATCTACTAAAGCTCTTTCTAGGCATTTGCTTAGTCATTTG AACATGGCTTATAAACCTGCTTGGTACCATGGTGTTATTATTTGAGTAGATAGTGAAAATTAACTGACAGAAATGGGCTT GCCCTTCCTTAGGAGTCAACCTGGTATTTTCTTTGTGATGTTCCGAAAAAATATTTGGAGAAGTATATAAAATTAACAGT TTATCATGAACTGTCAAATTTAATAATTGTTAATTTAATTGTGTGACTAAATTGTTTCAGGAGTCCATCAATGTGGCTGC AAAAAGTTGGGGTCTGGAGTGCCTTCGATATGAAATAAGTAAGTTTTGACAATGTATGAAAAATCTTTCTTTATTTTCTT ACTTGACAGTTTTTCTGTAATTGCTTTTGTGGTTGTCCTTGTGCAGGGGATATCTCTCCTCCACGTGGAGTGAGAGCAGC TATGGAGATGCAAGCAGAAGCAGAGCGAAAAAAGAGAGCTCAAATTCTTGAATCTGAAGGTAATCAATTTGATATTCCAA TTCTTCATATGGACGATATTCCAAAATCCTTCTTTAGTTTTATTACCTATGTCAATTCAACTTTGTTGCTTCTATGGTTA TGGGCACTGTTGACCTGTATTGTTGTTAAACAGGAGAAAGGCAGGCGCACATAAACATCGCTGATGGAAAGAAGAGTTCA GTCATTTTAGCATCAGAAGCTGCAAGGATGGATCAAGTTAACAGAGCGCAAGGTTAATTGCATGCTGATATATCAGTTTC AACTTATAATTATGTAACAATGTTAATCCCATAAGATTAATTGCATGCTTAATGCTTAACTTGATTTTCTAACTCTTTTT AGTTTCAAATCGTTATTTATATTTCTGTATTCATATGTACTTTCTTTATGAGTTTCTGGAAGACATGATGACATGGATTG GATCATTCTTACTTGATTACCTGACTTGTGTTCCATTGTAACATGTCACCATTAACTCTGTGTTTAAGGGCATGCTATCA TCATGTGTTATTTTCATCTATCAATTGCTTTTGAATGAAACCATAACTGATGAGCTTGATTGATGTTCCCTTGCTCCTTT TGTAATGTGCTACCATTAACTCTTAACTCTGTTCAATTTGGCTTGCTGGCAGCATCTATTTTTCTTCATCCATCAATTGC TTTTGGAAAAAAACTCAACTGATGAGCTTGATTACTGTTTCCTTGCTTCAGTGACACTTCCCCCTCAATATTTTTATGAC TTTATAACTAGCACTGTTCTTCTTCAGGTGAGGCTGAAGCCATCCTTGCAAAAGCAAAAGCAACAGCTGAAGGGCTTGCT GTTGTGTCACAATCCCTAAAGGAAAGTGGAGGACCAGAGGTAAGGTTCTTCATTTTCTTCGTATTCCATATATCACAGCT TGTACAAGCAGTGAACTATATGTTGCTAGTTTAATTAATTGTTAGTTGTCATATGTTGCATCTGTTGAGAATTTTTTTTT GTTTATATCTTATTAGTAATTGTCTACCTTTTCATGGAGATTTTAGAATATGTTGGCTGAAAAAAGGTAATGACAGCACA CACCTTGTGTTTATAGTTCTATCCCTTGCATGTCAAAAATGTTGGGCATTTATAATTTTTGAATATGCTTGTATTCCATC CATATAGACTGAGTGATTGTGAAACTTCTGTATATAAACCACATTATTGCATTCACAGTTTTCAGTGCAGGATCCGGTTG ATTTTTTCTTTGTAATGTTTGATATCTTGATTCTTTTTTTTCTTTCTTTTTCTTGAACACGTTCAAGCATTTTATGGTAT AACTCCATCCATCTGAATGTTTGGTTTGGTTATAGCAAACTAAAAAATAAGTTCCTCTTAAACGCAGTTTGGCTAAAAGT AAAAAAATGTAAATTTTGTATTGGGTCTGAAAATTTAATACAAGTCTAATACTGTAAATTTTCTTTTCAAATAAAAATTT CCAAGTATTAATCATTTCACTTCAAATTTATTTTTGACCAAAATTAATTTTGAAAAATGTAGGTCGTCTAAAATTAAGCT TGCATTCTTGCAAACACTCGACCAAATACAAACTCAATAGGGTAGAAGGTTAATTATGTTTGTGTTTCTGTGCTTATCAA AAAAAAAAAATGTTTGTGTTTCTGTAAAGCTGGGAAAAAAAATTCTTGTGGTAAATCCGGGGTGTATAAAATTGCCTCAT AATTGACACTTGAAAAAAAAAAATCTGAGTCTCGTGGAGTAAGTAACAGGCAAGGAATTACATTGTCATTTTGTTTGCAG GCAGCAAGTTTAAGGATAGCAGAGCAATATATTCAAGCTTTTAGCAACATAGCTAAGCAGGTAATTTGCCTACAAACTGA TTCATATGCAAGACTCTGCATTGTACAATTTATTCCCTTTGAAATTTATTTTATATTTGTTATTTGCTTTTTCATCAGGG CACGACAATGTTGCTTCCTAGCTCTGCGTCCAATCCCGCTAACATGATGGCGCAAGCCCTTACAATGTATAAAAGCCTGA TTGGTAATGTTAATGATAAGCACAGTGGAAACACACACTCTTCAATAGCATCACAAGAAGAAGAAAATGATTCCTCTGGT GAAGTTAAAGATGAGAACTCGACAAGGGCTAGTATCACTAACCGAATCCCAGATTATTCAGGGACAAATGGGTTTTCACT TCAGAAGCCCCCAACAAGGGACTAGTCTTTGATTTTACAAAACTTCTGATGAGTTCATTTGTTTGTTATATTGATGTTGA TTTTGAAAAATGAGTTCAAAGCTCGAAGAGAGGGTCGTGGAAGTGTGATTGGACTTTATATCGCAATAGTTCCTTTAGCA TTCATAATATGATACACGATTTATGACTAGACAATGAAATCTCTTCCTAACTAGCAAATTTGGGGAGTAAGAGAATGAAA ATAGAAGTTATCTGCCTTATCTCATGTGTACTAGTATTTTCTTCCATAAATAATGCTTGTGCAGATACTTACAACATGCT TCGTTTGAATTTAGCTGTATTTTTTTATGAACAGTTAATGGTTATACGGAGGATTTATTGCATGGGAACAATAGGAGTGC TTCCTGACTTTGTAGCCACACTCTGGAAAATGCAGAGTAGATGTGGTGTTCACAAGTATTTAGCCTTGAGTCCATTTTTT TGTTTGATTTTCAAAGCAATTACTGAATTGTTTTCTTTTGAAATTTTTTATGTGATATTTGGTATTTCGTTTGTAATTGG ATGTCGAAATGGTTAAGTAGGGCATTCCATTCCAGGACTTGATATGAATGCATTTGAACATGCAAGAATAAAGCTTTTGC TTACAAACT
CDS sequence (LotjaGi1g1v0301700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGCATTTGGAAAACCCGAACCGCAGTTCGTAGTTTGACCCAATCCTTAGCAGCCGCCACTCACCACCACACGCC GTCGCTCCCCTCTCGTCTCTCCTCCGTCCGCCACCTCCGCTCCGGTCGAGATCCTATCTCCAGGAATCATGAAATTATTC CTCCGGTGAACTGGGGGATTCGGATTGTGCCGGAGAAGAAAGCGTTTGTCATCGAGCGATTTGGAAAGTATGCCAAGACG CTTCCCTCCGGCATCCATTTCTTGATCCCGTTCGTCGATAAGATTGCTTATGTGCATTCTCTTAAGGAAGAGGCGATTAG TATTCCTGACCAGTCTGCTATCACCAAGGATAATGTTACTATCCTCATTGATGGTGTGCTTTATGTCAAGATTGTGGATC CTAAGCTGGCATCTTATGGGGTTGAGAATCCCATTTACGCGGTTATTCAGCTGGCTCAGACGACAATGCGTAGTGAGCTT GGTAAGATTACCCTTGACAAGACCTTTGAGGAAAGGGACACGCTCAATGAAAAGATTGTGGAGTCCATCAATGTGGCTGC AAAAAGTTGGGGTCTGGAGTGCCTTCGATATGAAATAAGGGATATCTCTCCTCCACGTGGAGTGAGAGCAGCTATGGAGA TGCAAGCAGAAGCAGAGCGAAAAAAGAGAGCTCAAATTCTTGAATCTGAAGGAGAAAGGCAGGCGCACATAAACATCGCT GATGGAAAGAAGAGTTCAGTCATTTTAGCATCAGAAGCTGCAAGGATGGATCAAGTTAACAGAGCGCAAGGTGAGGCTGA AGCCATCCTTGCAAAAGCAAAAGCAACAGCTGAAGGGCTTGCTGTTGTGTCACAATCCCTAAAGGAAAGTGGAGGACCAG AGGCAGCAAGTTTAAGGATAGCAGAGCAATATATTCAAGCTTTTAGCAACATAGCTAAGCAGGGCACGACAATGTTGCTT CCTAGCTCTGCGTCCAATCCCGCTAACATGATGGCGCAAGCCCTTACAATGTATAAAAGCCTGATTGGTAATGTTAATGA TAAGCACAGTGGAAACACACACTCTTCAATAGCATCACAAGAAGAAGAAAATGATTCCTCTGGTGAAGTTAAAGATGAGA ACTCGACAAGGGCTAGTATCACTAACCGAATCCCAGATTATTCAGGGACAAATGGGTTTTCACTTCAGAAGCCCCCAACA AGGGACTAG
Protein sequence (LotjaGi1g1v0301700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASIWKTRTAVRSLTQSLAAATHHHTPSLPSRLSSVRHLRSGRDPISRNHEIIPPVNWGIRIVPEKKAFVIERFGKYAKT LPSGIHFLIPFVDKIAYVHSLKEEAISIPDQSAITKDNVTILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSEL GKITLDKTFEERDTLNEKIVESINVAAKSWGLECLRYEIRDISPPRGVRAAMEMQAEAERKKRAQILESEGERQAHINIA DGKKSSVILASEAARMDQVNRAQGEAEAILAKAKATAEGLAVVSQSLKESGGPEAASLRIAEQYIQAFSNIAKQGTTMLL PSSASNPANMMAQALTMYKSLIGNVNDKHSGNTHSSIASQEEENDSSGEVKDENSTRASITNRIPDYSGTNGFSLQKPPT RD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 353 | 336 | 5.7E-181 | – | |
| PANTHER | 18 | 353 | 336 | 5.7E-181 | – | |
| SMART | 58 | 216 | 159 | 8.9E-56 | ||
| Pfam | 62 | 232 | 171 | 1.1E-29 | ||
| PRINTS | 65 | 87 | 23 | 3.2E-28 | ||
| Gene3D | 86 | 218 | 133 | 1.4E-43 | – | |
| SUPERFAMILY | 89 | 223 | 135 | 1.57E-40 | ||
| CDD | 96 | 206 | 111 | 1.30767E-62 | – | |
| PRINTS | 113 | 134 | 22 | 3.2E-28 | ||
| PRINTS | 148 | 165 | 18 | 3.2E-28 | ||
| PRINTS | 168 | 191 | 24 | 3.2E-28 | ||
| PRINTS | 192 | 210 | 19 | 3.2E-28 | ||
| PRINTS | 211 | 232 | 22 | 3.2E-28 | ||
| Pfam | 282 | 341 | 60 | 1.1E-23 | ||
| MobiDBLite | 346 | 402 | 57 | - | – | |
| MobiDBLite | 346 | 363 | 18 | - | – | |
| MobiDBLite | 373 | 402 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0301700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…