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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0302300 |
| Transcript ID | LotjaGi1g1v0302300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SDA1-like protein; TAIR: AT1G13160.1 ARM repeat superfamily protein; Swiss-Prot: sp|A7S6A5|SDA1_NEMVE Protein SDA1 homolog; TrEMBL-Plants: tr|G7J2L9|G7J2L9_MEDTR SDA1-like protein; Found in the gene: LotjaGi1g1v0302300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:73712340..73718989) extracted from Lotus japonicus Gifu genome v1.2.
GGGGCAAGACACGGTAAATACAATGCACTGCACTACCCTTCTCAAGTATCTCACTCCTTTCTTCATCCCCACGCACAGAT TCATTATATTATACCTAATTTACCACCGCCTCTCCACACTCCACAATGTGTCCACCGGCGGCGGCGGCGGCGGCGGAGTC GCTTCTCGCATCTGGCCGGACCTCCGAGAAGCTAAGCCTACCAGCACTCCAATCCAAAATGAAGTGCGACCCTGAAGGCT ACGAGTCGGAGCTCCTCCTTCTCCGCAACCAATTCGACTCCTCCCTTCACCTCTTTCTCGAACAAGCCACCCATGGCTTC TCCTCCATCACCGGCGTCTCCACCGACCCCACCGTCGCCAAAGACCTCGCTGATCGAGCCTTGTTCCTCTCCCATGTCAC TCCTTTCTACCCTAACCACCTCGCTGATTTCCCCTCCAAACTCATCCAGTTGCTTCGTGAAGCTCACCGCACCTTGCCTT CCGGCCTCCGCTGCCACCTCGCCCAGGCCCTCATCCTCCTCGTCAATCGATCGGTCTGCCTCCGTTTGATTCCATTTCCG TTGAATTGTATTGTTTTCTGGTTTTGGTTTTGATTTGAATTTCGTTGCAGATTGTTGATATTGGTGAAACGCTGTCGTTG TTCATGGAGCTTCAAACCCTAGGTGACAAGACGCTGAAGAAGCTCGCGTTTGATCACGTTATTCACAGCATAAAACGCAT GAATCAAAAGCATAAGAACGATGCCAAGAACCGTTCACTTCAGAACATCCTCTTTGTTATGCTACAAGTTTGTGATTTCT GAATTCTGAATCGTTTTTTTCTTTCTTGTTTTGAATTCAATCAGCATTTAGCATGAAATAGGCTAATCTAGACACATTGT TAATCTTCTGTGTGAATGGGGTTTGTGTTTGTTTGAATAGAAAGAGGAGGAACAACATGCCATGAGAGCGCTTGTGACTC TGTGTGAGCTTCATAGGAGGAAAGTGTGGTTTGATGAGAGAACAGCAAATGCAATTTGCAATGCTGCTATCCATCCACAA TCGAGGTACATTGTGTTTTTATTGTTGTGATTTTTTTTTTTATCTTGAGCAAGATCATGATTTTTGTATTTGTGCCTCTC AGGATCATGATAGCGACTTTACAATTTCTGCTTGATTATGAGAAGATTACAGGCGATGAAGATAGTGATGATTCCGGCAG CGATGAAGAATTGACTGAATCACCTCAAGTTATCCTCAGTAGGGAGAGAGTTTATAAGGTGAGGTTGAATGATAATCATT TTATTTACGCTGTGTTATACTTTAAAGCAGTAGCTTTCATATCTATTGTTCCCAAGTCCCAACCTTAGAATTATATATAA GTTCATATGAAACATGTCGGCATTAGTTATCTGAGGATATATTTGGGAGTTTTGAAGAGGGTCGAGTGGATGGGTTCATA ATGAACTGGCATGGAATGGGATAGAGTGGAAAGGTAATTAATAGAGTGGAGTGGATTACAAGTTTAACTGTTACTAGCCT TTATAGACCTTTTATATGAATTCATGAATAATTTGGGAGATATCAAAACCTACAATCAAAATTAAGATAAAAAATTATTA GATCTGAAGAGAATTCAGAACAAATACAGACTTTTCATTTTTAATATTCAACTCCATGAAAGGCCAGAAACACAAATAAA ATAGGGGTGTTTATTTACCATTCCTTAACACATTGGTCATTACAATACTTGTTACAGAAACGTGTATACATATTGCATAT AATTCAATTTGCATATGCACATCCTTATTTACCATTCCTTAATACATTGGTCAAGTGACTTGCACTGATATAAGGATGTG CATATGCAAATTGAATTATATGAATATCACTAGATGTACATGATAACCCTTAAAGAGTACAGTAAGAGTCTCAGTATTAA TCACAAGAAGGAATGTCCTTCTTCACAAAGAGAATTCTCTATTACAAACTCTTGTAACAAATTGGCCCGTAGATCTGAAG AGAATCAACATTATCAAATGTCTCAAGTATCCTCTTACCAGAGTAGTTAACTATTTATACTCTTCCTAATAACCTCCCTC CTAACAAATTGGCCCGTTATTTGACAATCCTTTGAGGTCCTTTTCTTTTTTTTGTGTAAATTATCCAATCATCCCTTTTA TTTCTCTTTCGAGGCCTTCTCTTTTCCTTGCGTGAACTAATCACTCATCCCTTTTATTGCTCCTTTCCCTAACATGAACT GAACTAGAATCCAATATATAATGTCACTCAAGAAAAACATCAATTAACAATAATAACTTAGTTACAACCAATCTCACTTC TTAATCATGGTAAGTGGAAATCTGAACATAAGACAGAGTTCCGTTCAGAACAATTACAGGAAAAATTAGTAAGACAAAAG GTGTTAGGGTTAATATTATAATTTACATTTAGGATAAAAACAAGTGTTATGTCCTGAATCCCCTCGAACTGGGAGGTACA GAGATTGGGAGGTTTGAGTGTTGTAAGTGGTTTGGGTTTCCTCAACCATTTTGCTATATTTGTAATAAACTTGCCGAACA ATGGGTTGAGATAGATCTTTTAAGTCTCACTGTTCTACTCCATCACTCACGGTTTCACTCCATCCATCAAACATAGCCTA AAGTAGTTTACTTGCACTCATTCTTGGGAGAATAAAATTTGGAGTATTGGGACATGTTTCAGATAGTTCTCGTTGAAGTT TGCACTCAGTTGTTTATAGTTAATTGTCATTGATACAAAATTTCAGGCAAGCCACCAAGGGACAGCAGCTAGCAAAAAGA AAAAGAAGGCAAAACTAGAACGTGTAATACGCAGCATCAAAAAGCAACAACGCATGTCATCTGAAAAGAAAAATAATAGT TACTATTCCCCACTTAACCATCTTTTAGATGCTCAGGTTCGTAATTTTTTTCATCATCATCTTAAATACATTTTGGGTTT GGATGTTGTTTATTGAATCAAAATCTTGGTTCATATGATCTGCAGGGTTTTGCTGAGAAACTTTTCTCGTGTCTCCAGAA TTGTAATGAACGATTTGAGGTGCTTACTCTAATTAAAATCTAAACATTCCTGTCATAGTGTAATTTTGTAACTTGAAAAT GAAGGCTTGCAATTCCTTTCTATATATCGTCATGGTTATTTAAGATTATGTTTTTTACTGGTTTCTACAATTACCCTCTG AATTTCAGATCAAGGTGATGATTATGAAATTGATTGCTCGAACCATTGGACTTCACCAGTTAATTCTGTTAAACTTTTAT CCTTTTGTTCAGAAATATATTCAGGTATATCATTTGATAAATTGGTAAAATTTGGTATTTTGTATATAACTGAAATGTGA CAATGTGCTATATGCATTATGTTATCAGCCACATCAACGCGATGTTACAAATTTGATTGCAGCAGTAGTTCAGGCTTGCC ATGACATGGTACAGTATGATTGTGACTTTTCTCAGTCAGAATTATTTTATAAATAATAGCTTTTCCTTTTCAAAATTTGA TGCTTCATTAGATTTATGTAAAGTAGTCTCTTTGGGTTTTTCTTTGCAACATATCTCATTCAAGGTGTTATTTGAATGCA GGTTCCTCCGGATGCAATTGAGCCCTTGTTCAAACAAATAGTAAATCAATTTGTACATGACCGCTCACGTCCAGAGGTAT TCTTTTTGGCTTTATGTTTTGATTTTATTGATTGAGGCGAGCTTTGATTTGTTGATGAGTTCGATTGATATTTTTAGGCT ATTACTGTTGGACTAAATGCAGTCAGAGAGATCTGCATGCGCATGCCACTGGTAATCTGCTCATCCATTGGACATATCTG CATTTTATGTTCTCTTAAAATATATCTTGTGCCACTAATAAGGGTTGGTTAACTAGTAGGAAAGAACTTCTTTGGCAAAA CGGTCTTGGGTTCTGGTTCCTACCGGTGCTTCTTCATTAATAGGTCATCCATGAGCATCTTCATTAGGAGGCTTGTGGCA TGGGCCCTGGAATTGGACCACCTCCTTGCTCAACTTTTTTTACCAATATCCTATGCTTCTGTTTAGTTACTAATCCTTTC CTTTGTGCTATTGTATTGATCTTTTGATTTGGGACTGTAGTTAATGAATGAAGACTTACTACAAGACCTTGCATTATATA AGAAGTCACATGAGAAGGCAGTTTCAGTAGCAGCTCGATCTCTGATCGGAGTATTTAGAGAGGTGGGTTAACCCGACTCC TTTATAAGTTGGCGATTGCTGGTGTGCTAGCACAGTAGCACTCTCATATTCATTGTCCAAACATCTAATTAGTGTTGTTC CTTTGCAGATTTGCCCCTCTCTACTAGTTAAGAAGGACCGTGGGCGACCAACCAACCCTACGGCAAGACCAAAGGCCTAT GGAGAAGTCAATATTGCGACTGACGTTCCTGGTGCTGAGCTTTTACATATTGACAATGATGATGAGCAGGAGAGTGGTGA TTCTGATGATTCTGTATGCAGTGGCTCTGATGATGAGAACCAGTTATGCACTGATAATACTGGAAGTGATGATGATGAAG CTGAAGATAATAGCGTTGTATCAGATGATGAGGAAAGTTCTGATTCTGAAATTGGTGTTAGTGATGATGATGATGATGAT GTTGATGTTGAGGGTAAGGAGGATGACCTTGAAGACAGTGAACAGTCTGATGAAGAGGTTGGTGAAGTTTCAGAATATGA AGAAGATAATGATGGAAGTGTAGAGGCAAAAAGTACATTGAAAGAAACTTCAAAAAAGAGGAAGTTTGCTGATTTTAATG GTACACTTACAGCTGCTGATACAAGTCTTCGGGCTTTGAAGAAATTGACAGGGACGACAACCGGGCATGCCCTGCCAGAA TCTGAGGATGGATTTCTTTCTAATGAGGACTTCCAGAGGATAAAGAAGCTAAAGGTTTGATAGTTTCTCATTTAGTGAGC TCAATTTCTAACATTTATAGCTTTTTGTCTGTTAAATTTGTTCAAGTGATTTATAGGCGAAAAACGAAGCAAGAAATGCA ATGGCTCAGCACGGACTAGCAATTAAGGTTCCAAGCTCTGATCAACTCAGTTTAAAACGAGTAGATGGCGCCGCGCTTGA AGTAAGTAGCTTTAGCTTGTTTAAATTGTTTTATAGATGATGTCTCTCTGCAGCCTATACCATAAATTAAAACAGAAGCC TTGGATAAATTATAGATACATTTGTAGATTTGCTTCTCCTAGAATTCATATTAGGCCTAAGTCTACCCCAAAAGCTAGCT TAGGGGTGGTAATTGCTCTGCCCTTTATAAGGTTTTATTTAGCCCTATCTATTGTAAACGTGAGACTTCAACAGCTTGAA ATAATATTTCTTCTTTTACACTTCTGTGATTGAATTTACCTATTCATGCATGTACCTTCTAGGTTCATGTAAAGAAAAAG ATGAACAAGGAAGAAAGATTGGCTTTGGTTAGAGCAGGCAGGGAGGACAGAGGAAAATATTGTGCTCGAACAGCTGTAAA ACAGAAAAAGGTATGTTTGTTGCTCGATTTTGCAATTCTTTTAAAACTGAGAGAACTTAACTTCATTTCTAGATCTTTAA TTTATGTCTTTTTTTTATTAATTGGTGTCTTCTCTTCAAATTAATCATAAAATGTTACATGGTCATCTTGAATTTCTCCC AATGGTGAAGGCCCCAGTTGATTCTCCAAATTCAGTAGTGATGCATTACATTTGTTATGCATATAAATATAAATATATTA CTATATGACTAGTTGCATCGACAAAAAAGTCACATTACAAGAACTACTCTACTCACATGGCCTAAACATAAGAACTTCCA GGAAATTTTTAATTATCAATGGAAGTTCCCGTGGATTATGTGTATATGAGTTTTGATTGTGGGAAGAAAAACCAATGGTC GTCTGTTGTTTGTTGTGAACAGACGGGTGGCCTGAGCAACCGACAAAAGGAACACAAGAAGAAAATGCCCCTGGCTGCAA AGAGATATAAGGTAGCAAAATCTAAAACAGAGAAGAGGAAACAACAACAGCGGGCTGGCAAACAGTTTCGCGGGAGGAAA GCATGGAAACAATGAGGCAATAAATGTGGTGTTGCATTATGAACTGATATTTTCTTGCTCTTGGAATGAACCTTTTTGAG CTTCTCATAAAATTTTGATGGTACTAGTTGCTTTTTTTTGTTTGAAAGGATATTAGTTGCTTCTTATTCCTTTCTGAATT TAGTTACAGCGTTTAATCCAGACAAATTTTCTTTATCATTATTGAACCTTAAATTATTTTCACTTTTATTTTGTTGTTCC TGGTTGCCTTTGTCCGTGGAATCTTCTTCGTCTAAATAATATTTTTTACTGGAACAATATGTTGCCAACACCCAATTTGC CAAATTTGCCCCTTTTTAATTTTTAAAGGATCCATTTTTTTTATACATCAGAAAGATAAATTGAACCCGTCAGACATTAA TCCTTGGATCATCCCCTTCCTAACCCATATATCATGCACTTACCACTTGAGTTATGTAAGTTAATTTTAGTTTGGCCTTA AATTTTAATTTAAACTTTTAGTTTTAATTAACCAAGATTAAAAATATATAAAAATGAAAAAAACCATGCCGTCAAAAAAT TATCTTTAAC
CDS sequence (LotjaGi1g1v0302300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTCCACCGGCGGCGGCGGCGGCGGCGGAGTCGCTTCTCGCATCTGGCCGGACCTCCGAGAAGCTAAGCCTACCAGC ACTCCAATCCAAAATGAAGTGCGACCCTGAAGGCTACGAGTCGGAGCTCCTCCTTCTCCGCAACCAATTCGACTCCTCCC TTCACCTCTTTCTCGAACAAGCCACCCATGGCTTCTCCTCCATCACCGGCGTCTCCACCGACCCCACCGTCGCCAAAGAC CTCGCTGATCGAGCCTTGTTCCTCTCCCATGTCACTCCTTTCTACCCTAACCACCTCGCTGATTTCCCCTCCAAACTCAT CCAGTTGCTTCGTGAAGCTCACCGCACCTTGCCTTCCGGCCTCCGCTGCCACCTCGCCCAGGCCCTCATCCTCCTCGTCA ATCGATCGATTGTTGATATTGGTGAAACGCTGTCGTTGTTCATGGAGCTTCAAACCCTAGGTGACAAGACGCTGAAGAAG CTCGCGTTTGATCACGTTATTCACAGCATAAAACGCATGAATCAAAAGCATAAGAACGATGCCAAGAACCGTTCACTTCA GAACATCCTCTTTGTTATGCTACAAAAAGAGGAGGAACAACATGCCATGAGAGCGCTTGTGACTCTGTGTGAGCTTCATA GGAGGAAAGTGTGGTTTGATGAGAGAACAGCAAATGCAATTTGCAATGCTGCTATCCATCCACAATCGAGGATCATGATA GCGACTTTACAATTTCTGCTTGATTATGAGAAGATTACAGGCGATGAAGATAGTGATGATTCCGGCAGCGATGAAGAATT GACTGAATCACCTCAAGTTATCCTCAGTAGGGAGAGAGTTTATAAGGCAAGCCACCAAGGGACAGCAGCTAGCAAAAAGA AAAAGAAGGCAAAACTAGAACGTGTAATACGCAGCATCAAAAAGCAACAACGCATGTCATCTGAAAAGAAAAATAATAGT TACTATTCCCCACTTAACCATCTTTTAGATGCTCAGGGTTTTGCTGAGAAACTTTTCTCGTGTCTCCAGAATTGTAATGA ACGATTTGAGATCAAGGTGATGATTATGAAATTGATTGCTCGAACCATTGGACTTCACCAGTTAATTCTGTTAAACTTTT ATCCTTTTGTTCAGAAATATATTCAGCCACATCAACGCGATGTTACAAATTTGATTGCAGCAGTAGTTCAGGCTTGCCAT GACATGGTTCCTCCGGATGCAATTGAGCCCTTGTTCAAACAAATAGTAAATCAATTTGTACATGACCGCTCACGTCCAGA GGCTATTACTGTTGGACTAAATGCAGTCAGAGAGATCTGCATGCGCATGCCACTGTTAATGAATGAAGACTTACTACAAG ACCTTGCATTATATAAGAAGTCACATGAGAAGGCAGTTTCAGTAGCAGCTCGATCTCTGATCGGAGTATTTAGAGAGATT TGCCCCTCTCTACTAGTTAAGAAGGACCGTGGGCGACCAACCAACCCTACGGCAAGACCAAAGGCCTATGGAGAAGTCAA TATTGCGACTGACGTTCCTGGTGCTGAGCTTTTACATATTGACAATGATGATGAGCAGGAGAGTGGTGATTCTGATGATT CTGTATGCAGTGGCTCTGATGATGAGAACCAGTTATGCACTGATAATACTGGAAGTGATGATGATGAAGCTGAAGATAAT AGCGTTGTATCAGATGATGAGGAAAGTTCTGATTCTGAAATTGGTGTTAGTGATGATGATGATGATGATGTTGATGTTGA GGGTAAGGAGGATGACCTTGAAGACAGTGAACAGTCTGATGAAGAGGTTGGTGAAGTTTCAGAATATGAAGAAGATAATG ATGGAAGTGTAGAGGCAAAAAGTACATTGAAAGAAACTTCAAAAAAGAGGAAGTTTGCTGATTTTAATGGTACACTTACA GCTGCTGATACAAGTCTTCGGGCTTTGAAGAAATTGACAGGGACGACAACCGGGCATGCCCTGCCAGAATCTGAGGATGG ATTTCTTTCTAATGAGGACTTCCAGAGGATAAAGAAGCTAAAGGCGAAAAACGAAGCAAGAAATGCAATGGCTCAGCACG GACTAGCAATTAAGGTTCCAAGCTCTGATCAACTCAGTTTAAAACGAGTAGATGGCGCCGCGCTTGAAGTTCATGTAAAG AAAAAGATGAACAAGGAAGAAAGATTGGCTTTGGTTAGAGCAGGCAGGGAGGACAGAGGAAAATATTGTGCTCGAACAGC TGTAAAACAGAAAAAGACGGGTGGCCTGAGCAACCGACAAAAGGAACACAAGAAGAAAATGCCCCTGGCTGCAAAGAGAT ATAAGGTAGCAAAATCTAAAACAGAGAAGAGGAAACAACAACAGCGGGCTGGCAAACAGTTTCGCGGGAGGAAAGCATGG AAACAATGA
Protein sequence (LotjaGi1g1v0302300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCPPAAAAAAESLLASGRTSEKLSLPALQSKMKCDPEGYESELLLLRNQFDSSLHLFLEQATHGFSSITGVSTDPTVAKD LADRALFLSHVTPFYPNHLADFPSKLIQLLREAHRTLPSGLRCHLAQALILLVNRSIVDIGETLSLFMELQTLGDKTLKK LAFDHVIHSIKRMNQKHKNDAKNRSLQNILFVMLQKEEEQHAMRALVTLCELHRRKVWFDERTANAICNAAIHPQSRIMI ATLQFLLDYEKITGDEDSDDSGSDEELTESPQVILSRERVYKASHQGTAASKKKKKAKLERVIRSIKKQQRMSSEKKNNS YYSPLNHLLDAQGFAEKLFSCLQNCNERFEIKVMIMKLIARTIGLHQLILLNFYPFVQKYIQPHQRDVTNLIAAVVQACH DMVPPDAIEPLFKQIVNQFVHDRSRPEAITVGLNAVREICMRMPLLMNEDLLQDLALYKKSHEKAVSVAARSLIGVFREI CPSLLVKKDRGRPTNPTARPKAYGEVNIATDVPGAELLHIDNDDEQESGDSDDSVCSGSDDENQLCTDNTGSDDDEAEDN SVVSDDEESSDSEIGVSDDDDDDVDVEGKEDDLEDSEQSDEEVGEVSEYEEDNDGSVEAKSTLKETSKKRKFADFNGTLT AADTSLRALKKLTGTTTGHALPESEDGFLSNEDFQRIKKLKAKNEARNAMAQHGLAIKVPSSDQLSLKRVDGAALEVHVK KKMNKEERLALVRAGREDRGKYCARTAVKQKKTGGLSNRQKEHKKKMPLAAKRYKVAKSKTEKRKQQQRAGKQFRGRKAW KQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 798 | 783 | 7.4E-274 | ||
| PANTHER | 16 | 798 | 783 | 7.4E-274 | – | |
| SUPERFAMILY | 85 | 484 | 400 | 5.01E-7 | ||
| Pfam | 87 | 138 | 52 | 3.7E-18 | ||
| Coils | 289 | 309 | 21 | - | – | |
| Pfam | 447 | 798 | 352 | 1.0E-71 | ||
| MobiDBLite | 488 | 507 | 20 | - | – | |
| MobiDBLite | 522 | 627 | 106 | - | – | |
| MobiDBLite | 547 | 612 | 66 | - | – | |
| MobiDBLite | 613 | 627 | 15 | - | – | |
| MobiDBLite | 747 | 802 | 56 | - | – | |
| MobiDBLite | 765 | 780 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosomal large subunit export from nucleus | The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm. | ||
| Biological process | Actin cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. | ||
| Biological process | Ribosomal large subunit biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi1g1v0302300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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