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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0302400 |
| Transcript ID | LotjaGi1g1v0302400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-binding protein BIN4; TAIR: AT5G24630.11 double-stranded DNA binding protein; Swiss-Prot: sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4; TrEMBL-Plants: tr|A0A1J7IRE2|A0A1J7IRE2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0302400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:73740488..73746919) extracted from Lotus japonicus Gifu genome v1.2.
CTCATCTGAGATTTGGGCTCGAAAATTTGAGACCCATGAAAGTTCCGCAAGCCCAATACAAAGTTCCCGCCCTTGGTTGT TGGTAGTACTAAACTACTACCAGTCTACCACACACGATCCCCCTCTTCTTCCCCATCCCTTTCTCGCTCGTCAAGCTTTG CAGATTTTCTGAGCAATTACCGTTTCCAACAGACACCGATTCCGTTTTTCTTCAATGTTCTATAGCTGATTCTCTATCTC TTTCACAGGTTATGTCTCACAATGTTTACATTCTAATTAAGATTGTGCACACAACATGTTCGATAATTTGCTTCACTGAA ATTCAATTTCTCAACTGTGTTTATTTTTTTCTTTCAGGGACTAAATCGTGTTTTCATTCACCACACTTCACTCAGAATGA GCAGTTCAAGGGAAAGCTCCCCAGATTGGTTGCGTTCTTTTCAGGTATCAGGAAACTTTACTCTTTTTAATTCCATTTTT TTTCTTAATTTTTTCTATACACTTCCATAATTATTGCTCGTTTGGCGTATATCATTGGTCCTGATTTTTGTCTTCATTTT TGTTAGTTGGTCCTTACATTACATATTTGCCTTCTAATCGACGAGCATTGTGTTGTTGTTGACTAGGCGCCATCATCGCA TTCGCCATTGGTGCTGTCATCTGATTCTGAGTCTTTACATGATGGTAGCTCTTCAAATGAGGATAAGACTGATGGTGAAG GGTCATCTCCAAAGTCGCCCAAACTTCCTAAGGTGAACAAGAACAAGAGTACACCTCTAGCTGCAAGCTCTGCCAGGTCT AGAAAGACATTAAAAGTGGAGACTCTTGAAATAGAAGATCCTACACCACCCAGAAGAAAGAAATTGGATAAGCTAAAGGA GAATGAAGGTACGCGCTTGATATTTGATTTCTGTTTGGAGTTCTCTCAGGGCAACTATGTGGAATAGAAAGATATAGGTT TTACAGTCAACTAGCTAGTATCCTCTGCACAATTTTTTGATACATAAAGTTAAATTAAGGTATGGTTTTTTTTTTTTTAC TTTTTAAATTTGAAAATGTTTGAAATTGAAATCTAATTTAATTGATAATTTACAAATGTCTTAGTTTGATAAGTTATTTA TAGATACATTTCACAGAGACGTCCTAATAAGTTTCAACATTTTACCACATATAATTAAGAGAAGACAAAAAGGCAAGATG AAAAGATGTGATTGGGTATAAAACCGTTTATATTGTCAGTGTATACTGTATACTAATTAAATTCATTTTTTGTTGATTGG AAAAAATAAGTATTGATTAAAGGAATTAAAGAAAGTAACATTATCCTTTGGTTGAATGACTATTTAAAAAATAATAATTA TTTAAAAAGATAATTTATATTGATTTGTGCTTATCAATTTTTTTTATTGATTTGTCTTTTAATTGATATGAAAGCTTAAA TATAACTCATGTGACTTCATGAGATTCAAGATTGAAGACTCAAATTTATTATGCATGGTTGATTGACATGAGCATAGGAT GTGAAAATAATTCTTCAGCTTGATTTTTCATTTAATTGACATTTGGTCCTTATTATATGATCCAGGGAACAGTGAGGAAA AGAAGATTATGATTGAATCGAACGTTGACAAGCATATAGACCATAAAGTAAGACCCCTGTAATCACCTCTTTAATTGTTA AGTGGTGTTCATATATTTAGGGAGGGGGGGGGGGTATGCCATGTTTGATCCATTAAGATTTTTCTCCCAGTTTGTCTTAT TTTGCTTAATGCCTTGGTTTCCTTCTATGAAAAATAAGTGTTTGGCCTGCTACTTTTTTGTAATTACTGATAATATCAAC GGATTTTGCCTAGGAATCTATTCATTCAATTTGGAATCTAACATCAGATTCTGAGTCATGCCATGATCATAGCCCAAAAA GAGAAGATCATATTGATCAGGTGGAAACTTCTCAGCAGCAAATATCTCAAATCCTTGGTGAAGGAGAACGTGGGGATGGA ATTTCCATTGGGAAAGATGGAAAGTCTCCATCCAAAAAAACTTCAAAAGAAAAGTCTTCGCAAAAACAAATAGATACAGA AGGTTGTACACCAGTAAAAGGGAAGAAAATAAAGGGCAGTGCAAAGGGGAAAGGTACAAAAACAGTTAATTCTGAATATT CAAAAAACAGATACAAGATATCACTCCAATCCCATCTTCATGCATGTGGATTTGAGATAGTTATTCCTTACCATTTTATG CGTGTGACATGTGGAAATGGAACAGATAATGATGGAGATGTGGAAGCTGCGGAGGAAGAAACTTTTGAAAAGCTTGTTGA ACCAAATGTAAGAATGAAATGATTAAGGTTATAATAATTGCCTGAATTTTGTCATCAATCCCATGACTCTGAAACATGGA TAAATGATAATAACTATGAAAGGCCACATTGACTGTCTATATAGCCTATTAGCCTGGCATATGAGTTGTGCTTGCTGTTT GTACTTTGCAGGTTTCCTCCTCAATGTTGCCTTTGATGCTTTCTGAGAAAGTTCACCGTACAAAGGTTAGGTGATGACTG TATGTGATAGATTTCCCTTTGATATATGTTAAGTTATATAATTATAAGGGCCATATTTAATTACTATAATGGGGATGGAA AATTCAGCAACAGAGGTTTCACTATTAAAAACAAATAAAAATTGAGAGAAGAAAAGTTGCTAGTTTTGTTTTGAGTGAAT AGTCATGCAACACATTGTAGCTTTCTTGTAATTGTATTAATTTTTCTCTTCGTAACTTCCTTATCCATGAGAAAGGAAAT GAGCACTTGACAAAGAGCTTCTCTGCTTTTGCAGGCACTTATTGAGTGTCAAGGTGACTCCATAGATCTGAGTGGTGATA TGGGTGCTGTAGGCCGCATTATTATATCAGATGCCCCGTCTGGGGATAAGGAAATGTGCTTAGACTTGAAAGGTATTTTA CATGTTGAGTTTTCAAGAAACAGCTTTTCTTGGGCTTCAGGTTTTAAAAAAAGAAGGGGGAATCCCAGATTCATAATCAT AATACCTTAGCTCTTAACTCTTTTTTTTCCAGATATTTTTATTTCTCCTTTAAGTTATATGCTGAGATAATCTTTCCATT ATAAGCCTTCCACTTTCTGAGTTACTGATATACTACTTTTGTTTGATAGTGGCAACCTATATCTGATGGTTCATATTTTA CTTATCTTTTTCAGGAACAATATACAAAACATCTATAGTTCCTTGCCGGACGTTTTGTGTTGTATGTTATCTGCATTAAG CATCATGACCTTGAAATTTTTTATTAACACAATTGGCTTGTAGCTTGTTACTTTTATGATTAAGATATCATACCTTTCAA ATACTGCTTTTATATGAGCTTGTTATTTTTCCAGGTTAGCTTCGGACAGTCAGAGGCAAAGGTATGTTGGCTATCTATTA TCTACTTATTTCCTCCCTTCTGCTTTTTATAAAAATTGTTTATATATATGTAATTACTAATTACTACCTTAAAGGTTAGT AAAATGTGTCCTAATTTATCTTTAGTTTTTTTTTTATATTTTATCATTCTTACTTAGTGATTTAATCATCCTCGATGAGG ATCTTGAAAAATATGGCTACCATTGATGTTTAACTTGAAGTTTCTTCTCAGATAGAGGGCATCATGAATGACTTCATACA GCTGAAGCCACAGTCTAATGTTTATGAAGCTGAAACTATGGTTGAAGGTTATTTGCATCAACCAACAATTATCTAGGATT TTTATTTCTGGTAGTGTTGCCTTTATGTTAATCCTAATTTCCTTTCCTGATATTCTATTATTTTCATTTGAGAAGGGACA TTGGATGGTTTCTTCTTTGATTCGGATGAGGAAGCTGGCAAGATGCAAAAAGCTGCTCACCAAACTGATGAAAATGAGCA TGCGGAGGAACAGACAAATGGTAAATCCAAAGGGAAGGCTGACAAAACATCAGTAAGTTTCCAGACAGTTGCTTTTGATT TTATATTTAACCTTAATAAAATGAACATGCTGGTGGATACATAGTTGCTGAAAATCTGGATGCAGGGTGCTGTAAAGAAA AGAGGTAGAAGTACGGGAGTAAAATCACAACCGAAGGTAGTAAAGAAGAAAGCTCCGGCCAAGAGGGCAAAGACCAAGAA ATGAGTCAAAGGAACTCACTTTTTTGCTGTATATGCCATGAACCAAATTAGTCATCCCTGAATTAAAAGCACAGATGCTG AATCACTTTGCCCCTGAAAGTAGTGATGATAGTAGAACAGCTGCAGTTAAGAGTTCTTACCAAACCCTCAGCAGAAGAAT TGAAAGCTAATGGTCCAGTGAATGAGTTATTATCAATTCATTCTTATTATGTTCTTTTATTTTAGGCCTGTTTAGACGAT ACATATAGTAGTTTCTTTTCCAGTGAATATTATGTTATCTTCTCTTTGATTTATCTGCGTTAGCAGGCTATTATTATCCA AAAGGGTCGGTTTGCAGAATATGTCGTATAGAATATTTGAGACAATGAAATTGAGGGTTTGTATATTTCTGTTTACATTG GAAATGGCTATCTGATTCATTCCAAACCAATATTTTTCTAGAATTACAAGTTCTCTCTAGAGGCTAAAGGGGTCTTAAAT GATGACCGGTCTGAGTGATGTTTAGCCGATACTCTTAATCACCTCGTTACTGGAGGTTTTGGAAGAGTATTTTCTGAATT ATGTTTCAAGAAGGTTCTTCAAGTGTAATCTTCTCGCTGTTCATAATGTCCATCTCATCGGTTGCTTTTGTTTTTTCCTT CCCCTCCTCCTCAAAAGCACTTTTGGAATATTCTTCAGACACTATTATTATTGTATTTCATTGGCCTTGTCTTACCAATA AAGTAAGAACTGAAACCAAGAGAAAGATTGGTACTCGAAAAGGTAAGAGAATATTTGATGAGGAAGGTACATGCTGACGT GTCTGATGGGGCTGTCTAATTGGTGGAGGAGGAGATGCAGGGCTTGGTTTTTGTGTCCTGTGTTGTCATGTAAAATGTTA GTTTTCGATTAGGTTTTTATTGAAAGTAAGCATAAGTAATGAATTGAAAGAGAAGGGAAATTGATCTAAATTGTTGGAGA TTGTACCCATTTGTGTTGGGACAGAAAACAATGTCATATTCATTAGCTTTGCAAGTGAAAGTGCTGGTGCCATCATCAAA TGCATAGCTATAAGCACTTGGACAAGCCCTCTTGAAAATGGTGGAGTAATAAGAAGGCTGGCATGTCTGTGGGTTTGCAA ATTCTCCACTGCAGCAGTACTTATCCAACTTCAATGCCTCACAAGCACTCCTACACCCGATTACACTCTGGTTTCCATCG CCTCCCACTACTTGAAGTTCTTTAGGGCAACCTGTACCATTGCATTTTTTTTCATGGTATAAGGTAATATACTCGGGTCA TTTTCCCATGTCACATTTATATACCTAATTGCTTTTGTACTTTGAATAAACTCTCACCTCTGTTGATATCTGTCATACAA CCTGTTGCATTACAGGCACCACTATATGCACCTCGTGGTAGAGCAACTAATGGCAAATTGTAGCCATCTACCATGCTTAC ATCATAGAAGTCTTGTCCACCGCCTGCACCGAGTGTTATCTCAAACAGTGAGGTAGGAGGAGCAGCACCACTTCCTTCAC ACTCCAGCCTTCCTCCACAGTCACCTGTTTGGCATTTGCCAACTCCTGTTGCATCAAATTTGCAGCCAGTCCTTGCCCAT ATCCGTCCTGACCACCCCGGAACAGTGGTGAGTTTGACGCTTTGGCCGGAGTCCAACCGGAATCCGGTCGTTGAAAGTCG AGGGCTTACAGATCCGGCGAGGGTACCGGGCCATATAGTATAGGGGCAGTTGTTGAATATGGTGAATGTGGAAGAAAAAG AGCAAGAGAAGAAACTAAACAGAATAAGGGAACAAAGGAGCTTCCAGGATGCCTTAGTTGGCATTTTCAAGGATTATATT TGATACTGTAGGCTGCTATCCTAGAGGGAAACAGAGGGATTGATTGCTAAAGGAATGGCCAATGGCAACAAGATTTGTAA TTTATAAGGATATTGAAGGAGGAGGGAGTTGTGTGCTGTTTAGTTATTTATTGCTTTCATGAAATTCTCAGCCGCAGGAC CAGCTTTATGGGTTTAGTATTTCTTTTATTGTGGATGGCCTCATAAGGAAGCAGTTCTTTGCTTTTGCAGTTACATGTAA CAAACCTGGATCGCTATGTGACCTTCTGACCTGAGATATAGTCAGTTTCTTCAAAGAATCATTTAGGGAACTCTCACATT GTGTATCATGTAGGAAGCTACATGTAGGGGCGGGAATAGGCTGGGCCTAGTTAGGCTTTGCGTAAATAGGCATAGCCTGT TTAAAAATCTTAAGGCTTGAGCCTGGCCTGTA
CDS sequence (LotjaGi1g1v0302400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGTTCAAGGGAAAGCTCCCCAGATTGGTTGCGTTCTTTTCAGGCGCCATCATCGCATTCGCCATTGGTGCTGTC ATCTGATTCTGAGTCTTTACATGATGGTAGCTCTTCAAATGAGGATAAGACTGATGGTGAAGGGTCATCTCCAAAGTCGC CCAAACTTCCTAAGGTGAACAAGAACAAGAGTACACCTCTAGCTGCAAGCTCTGCCAGGTCTAGAAAGACATTAAAAGTG GAGACTCTTGAAATAGAAGATCCTACACCACCCAGAAGAAAGAAATTGGATAAGCTAAAGGAGAATGAAGGGAACAGTGA GGAAAAGAAGATTATGATTGAATCGAACGTTGACAAGCATATAGACCATAAAGAATCTATTCATTCAATTTGGAATCTAA CATCAGATTCTGAGTCATGCCATGATCATAGCCCAAAAAGAGAAGATCATATTGATCAGGTGGAAACTTCTCAGCAGCAA ATATCTCAAATCCTTGGTGAAGGAGAACGTGGGGATGGAATTTCCATTGGGAAAGATGGAAAGTCTCCATCCAAAAAAAC TTCAAAAGAAAAGTCTTCGCAAAAACAAATAGATACAGAAGGTTGTACACCAGTAAAAGGGAAGAAAATAAAGGGCAGTG CAAAGGGGAAAGATAATGATGGAGATGTGGAAGCTGCGGAGGAAGAAACTTTTGAAAAGCTTGTTGAACCAAATGTTTCC TCCTCAATGTTGCCTTTGATGCTTTCTGAGAAAGTTCACCGTACAAAGGCACTTATTGAGTGTCAAGGTGACTCCATAGA TCTGAGTGGTGATATGGGTGCTGTAGGCCGCATTATTATATCAGATGCCCCGTCTGGGGATAAGGAAATGTGCTTAGACT TGAAAGGAACAATATACAAAACATCTATAGTTCCTTGCCGGACGTTTTGTGTTGTTAGCTTCGGACAGTCAGAGGCAAAG ATAGAGGGCATCATGAATGACTTCATACAGCTGAAGCCACAGTCTAATGTTTATGAAGCTGAAACTATGGTTGAAGGGAC ATTGGATGGTTTCTTCTTTGATTCGGATGAGGAAGCTGGCAAGATGCAAAAAGCTGCTCACCAAACTGATGAAAATGAGC ATGCGGAGGAACAGACAAATGGTAAATCCAAAGGGAAGGCTGACAAAACATCAGGTGCTGTAAAGAAAAGAGGTAGAAGT ACGGGAGTAAAATCACAACCGAAGGTAGTAAAGAAGAAAGCTCCGGCCAAGAGGGCAAAGACCAAGAAATGA
Protein sequence (LotjaGi1g1v0302400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSRESSPDWLRSFQAPSSHSPLVLSSDSESLHDGSSSNEDKTDGEGSSPKSPKLPKVNKNKSTPLAASSARSRKTLKV ETLEIEDPTPPRRKKLDKLKENEGNSEEKKIMIESNVDKHIDHKESIHSIWNLTSDSESCHDHSPKREDHIDQVETSQQQ ISQILGEGERGDGISIGKDGKSPSKKTSKEKSSQKQIDTEGCTPVKGKKIKGSAKGKDNDGDVEAAEEETFEKLVEPNVS SSMLPLMLSEKVHRTKALIECQGDSIDLSGDMGAVGRIIISDAPSGDKEMCLDLKGTIYKTSIVPCRTFCVVSFGQSEAK IEGIMNDFIQLKPQSNVYEAETMVEGTLDGFFFDSDEEAGKMQKAAHQTDENEHAEEQTNGKSKGKADKTSGAVKKRGRS TGVKSQPKVVKKKAPAKRAKTKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| MobiDBLite | 1 | 117 | 117 | - | – | |
| PANTHER | 1 | 423 | 423 | 1.1E-125 | ||
| MobiDBLite | 35 | 49 | 15 | - | – | |
| MobiDBLite | 55 | 76 | 22 | - | – | |
| MobiDBLite | 77 | 117 | 41 | - | – | |
| MobiDBLite | 135 | 230 | 96 | - | – | |
| MobiDBLite | 139 | 154 | 16 | - | – | |
| MobiDBLite | 182 | 196 | 15 | - | – | |
| MobiDBLite | 211 | 230 | 20 | - | – | |
| MobiDBLite | 359 | 423 | 65 | - | – | |
| MobiDBLite | 359 | 395 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded DNA binding | Interacting selectively and non-covalently with double-stranded DNA. | ||
| Cellular component | DNA topoisomerase complex (ATP-hydrolyzing) | Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity. | ||
| Biological process | DNA endoreduplication | Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. |
Expression pattern of LotjaGi1g1v0302400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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