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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0303400 |
| Transcript ID | LotjaGi1g1v0303400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G54190.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A1CNW8|SSH4_ASPCL Protein ssh4; TrEMBL-Plants: tr|A0A151SG68|A0A151SG68_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0303400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74044956..74051465) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTCCTCTCTGATATTCTCCAATGAACAATCTTGACCATCATTGCTTCCACCGCCATCATGGTTGCTATGGCTTCCG CCACCACCACATCATAACAACGACTTTCACCACCACTCATCCCTTCCTCCACCACCTTCCCTCCCCGTAACCCTTGCTCT ACCCACGACAACCACTGCACCCTCTATCGTGGTTCCAACCAGCTTCCATGTGGCGGTAGCGACGACACCATCATAAAAAA CACTTTATTTTCCCCAGCGCAAACCCAGAAATTCCCTAAACCTCAACCCAAAAGTTGGGATTTTGCTCATGCAAGAAGGG GCGGAGATTAATGAAGCGGCATAGATAGGTTTGTATTGCCCAGATCTACCCAAGCCATTCGGATCTGGGTTCGTCAAGTT GCGGTGTTTGATGGATGGGTTTGTAGTACCCAGATCTACCCAAGCCATGGATTCTCAGATCTACATAGACGGTGAAAAGC CCATATTCAAACAAGCACGAGCAACAATCGAAGGAGGAAACCCAGATCCACAACGAACATGAACCCAAGGAATTTGTGGT GGTCGGAGTCGTGAGGAACCCAAATCCACAGCGAACACGAACCCAGATCTCTTCCACCCATTGTTATCTTTTCCTTTCCT CGTGAGAAACCTAGATCCGAATGAAAACGAGAAACAATCGACGGAGGAAACCTAGATCCACAAAGAACACGAACCTAAGG AATTTTTTGTGGTGGGAGTTGTGAGAAACCCAGATCCACAATGAACACAAACCCAGATCTCACGACGCGGTGGTGGAGGA GGGAGCCAGAGGTGTTATCTTGGACAAATGTTACTTCAAATAAAAAAGGAGAGGGTTAGAAGGCTAGGAGGAGCCAAATC TGATGAAATCTTTCTTGAGTTTTGAATAATTATTGATTCGGGACGACGGCGGCATAACCAGGTTTCAAGAACGTATTATC AATCTCACCGTCTTGCATTCTCCTTCTCCTATTTGTCTTAGATCTGCAAATCCAAACATCAAATTTCTGATCACGATTTT TGGGGAAATCTAGGGTTTTGGTGTCCGAAATCAAGATCGATGCTGAGGGTGGCTAGATATATTGGAGGTTTAGGGTGGCT CGCTGGGTTTTGTTGTGGTTGTGCAGTGGCTAGGGACCGGTTGCGAAAGCGGCGACGCGAGTGGTGGCAGCGTTCATCTT CAAAGAACATAGCCAAATAAGGTTGAATCATGGTATGTTTGATATTTTGCAAAATTATTTATTAGTTAATAATCATATAT GGTTAGATAATAAAATGTTTTTATTAAGGGAAATCTGGAAAAAAAATCAGAGAAATCCATTGTTGTGAGTTGAAAGTAGG TTGTGTAAAGTTACACAAGTTTTTGTTGTTGTGTATAGTAGAGTCATCATGTTTCTTTAAGACCAAACCCACCAAAAGGG TTGTTGCAAATGAGGTCCTATAGGCGCGTGGAACCAAATTATAGTGTTCGAAATAAGGAGATACATCCATGTAAAGACAT AGAGTCTCATCTAAACTTCTCAGGGATGAGGGAAATCTTAGCAGCAATGTAGAATTTCTTATTCTATACAAGGTCATCTC TCACAGGCCAGAGCAGGTGTTGTATTGCGATGGTGTTTGAACTTATTAACTAGAAGGGCTCACAGAAAGATAGCCCGCAC CATGACTTTGATTTTCTTTTTCTTAGAAAAAGAAAATTTCAACAACCACTGTCCCAACTCGTCTCTGTCCAGGCTTCTCA TGTATCTGAGAACTCTTGACTAACATGAGGAGAACATGAAACTTTGAAGGATGACTTCCAAATTCAGCATTTCTGTAATC CATTAGGAAGTAGGTGCACATATGAACCTTGTCTATTAGGCAACATCACATCTTTGTCCTTTGTCTTAGTAGAGTCTTTC GGTGACATGTTTCAGTCCTCTCTCTCATTCCTTAGAAAAAGTGAGCCAACAGTTCAAAATATGAATTTGGAATCTGATGA CTCTGACATTGAAATGATTAAAATTGAAAAGGATAAATGTTAATATATATAGAATGAAAGAAGGGGATGCAAAACAACAC AACCCACATTGTTGTTGTCTGAATCTGAGTGAATCAATGGAATGTACTATCATTATCGCCTAGAAAATAACTTTCTGCAG TAAAAAAAACCATCATTATCGCCTCCGTTTCAAATACAAGATACTATCATTATCGCCTAGAAAATAACTTTCATTCGGAG AATAAAAGGTACTCTGCATCTCAATTTGAGAATCAAGAGAAATATGTTACTTAGTTGCTCTAATAGAAACCATTAACACT CATGATTTTGTTTTTCTTCATACCTCCAAACCTACCATCTCTAGACATTTTTTATTTCTTGGCAGAAGAAATTGTTGTTG GAATTGTAGAAACTGGGCCATGAGATTGGGCCTGAGTGGGCAAAGTTCTCTACTGAAGAAGACATTCCATTGATTCACTC AGATTCAGACAACAACAGTGTGGGTTGTGTTGTTTCACAGCTCCTTCTTTGGTTCTATATATATATATTGATCTTTATCT TTTTTAATCATTCCAATGTCAGAGTCATCAGATTCCAAATTCATATTTTGAAACGAGATCGACCCCAATTGAAATTGTGT GTGGACTCCATTTCACTCACTCACTCACTGTCTTCCAATTCGTGCTCTATAAAACCCTAATTCCCCTTTCTTCGTTCTTC GGAGCGAAGAAATTCAGCTATTTAGGGTTCAGTGGGTGAGGGTGAATGGTGGTGTAGTGTTGAATTGAGTGTTGGAGTGA GTGATGGAAGGTGGTGGTGGGAGGAGGATCACGGTGAGCCCTCGACCTTGCTGTGGTCGGAGGGTTGTTGCGAAGAAGGG GCCGCGGCGTGGTGGTGCGGTCGATGGGTTTGTCAACAGCGTCAAGAAGCTTCAGCGGCGTGAAATCAGCTCCAAGCGTG ATCGCGCTTTCACTATGACTGATGCTCAGGAGAGATTCCGCAACATTCGCTTGCAGGTACCCACTTTCTCTTTTCTCTTT TTTGAACTGATCTTGTTGCTGTGAGTTGGATGATTTGCTTAGGGTTGCATGATCATAGCAAAAAAATTGAAAATTCTTGT TGGGTTTGTTATTAAGATTGTTTATTGTGCCTAATTTCAATTGCTGTTGTGGTGTGTGAACCCTAATTGTGTTTGATGAT GATTTGATGGATGCTTAGGAATAGATTACTAGTCTGAGCCTGCTGCATGTTTGTATTCTTATGGGGGGCTGTATGAATAG AGAATTTGTGTGGTGTGAAACTGTGTTTTGCTGGTGTGAATTTGTTTGTGGTTATGATGCAGTCATTGCAGATGGGCTGA GGGATATGGGTTGGGGAAATTGTGATTTCCTATATTACTGCTAATGCAGTGGGTTTTGTTTTGTTTTGAGGAATTCCCTT CTCTTGTATGTAGTACAGCATTTGAAACTGTGATTTTGCAGGTGTGAATTTGTTTGTGGTTATGATGCTGGCATTGCAGA GGGGTTGAGAGGGAGGTGGATTGGGGAAATTTTGATTTCCTATATCACTGCTAATGCCTTGAGTGTGGTTTTGTTCTTTG GAATTCCCTGTACTTGTATGTAGTACAGCATTTGAAACTATTACATCTGGTTGTATAATATATGATGCTTGCTCAATTTT AAATCATTGATGTTTATCTTTGAAGATAGAATTTTATTTCCTACTGTTTTGATTGTGAGATTTGTGTTTTGCTAAATGTA TGGTCATTCCCACTTGTCATGATGTGTGTCTGATGGATCTGTTTATACTTTATAGGAAGAATATGATACTCATGATCCCA AAGGTCCTTCTTCGGCTGTGGTATTGCCATTTCTGAGAAGAAGATCGAAGATTATCGAGATTGTAGCGGCACAGGACATT GTTTTTGCTCTCGCCCAGTCTGGGGTTTGTGCAGCATTTAGCCGAGGTAGTATTAGTAACTGGTATTTGTATGCTGTTCC ATTCTACTTGCAACTTACAATAGATATTTTACATGTGTTACATGTTTCAATATGCAGAGTCGAACCAAAGGATTTGCTTT TTGAATGTCAGTCCTGATGAAGTTATAAGAAGTCTGTTTTATAACAAAAATAATGACTCTCTTATCACTGTTTCTGTCTA TGCTTCAGACAGTTACAGTTCTTTGAAATGCAGAAGCACAAGGATTGAGTATGTATCATTCTCTGTTGTTCTCTATCATG TACCCTTACTCCCCACACTAAACAATATCTGCAATTCTAGATTTTAGTTGTGCTCTTTGATAAATGAGTATGTTGTTCAG GTACATAAGGAGGGGAAAACCTGATGCTGGCTTTGCTCTATTTGAATCCGAGTCTCTCAAGTGGCCAGGTTTTGTTGAGT TTGATGATGTAAATGGGAAGGTTCTCACATTCTCTGCTCAGGATAGGTAAACATTTTACTGTTCTGATACTTTTGTTCTA GGATGTAATTATGTAATATATCAATGCTTCATGATGGTGATACTTGTACCTTGTTTTTATCTTGTAGCATATACAAGGTG TTTGACCTGAAAAACTATACAATGTTGTACTCCATTTCTGATAAAAATGTCCAAGAGATTAAGATCAGGTAACTTTTCTT GATGTGCTTGTGGATTTTACTTTCACTTATGGTCATGTACATATTTCTGAAGCATATCATATCAACTTTCCAATTTCTCA TTATTCCTGTTCCTATTCTTTTTTATTTTTTTAGTTTCTTTGACTGGCCATACTGATTTGCTCTTGTTTGATGATTTCTT ATGATTAGTCCGGGGATCATGTTGCTGATTTTTGCCAAAGCAAGTAGCCATGTGCCGCTTAAAATCCTTTCAATAGAAGA TGGTACTGTTTTGAAATCATTCAACCATCTCCTTTATCGTAATAAGAAGGTGGATTTTATTGAGCAGTTCAATGAGAAGC TACTTGTGAAGCAAGAAAATGAAAACCTTCAAATTCTTGATGTAAGTAATTTTCTCCTTTCATGGATTAGATAAATAGTT CTTCATCCTGATATCTGACTTTTAATTCATTTTTAGGTGCGGACTTTTGAGCTAACTGAAGTTAGCCGAAGTGAATTTAT GACACCCTCTGCATTCATCTTTCTATATGAGAACCAGTTATTCCTGACATTCCGGAATCGGACTGTGGCTGTGTGGAACT TCCGTGGAGAGCTTGTTACTTCCTTTGAGGATCACCTCTTGTGGCATCCTGATTGCAATACAAACAATATATACATAACC AGTGACCAGGATCTTATCATATCCTACTGCAAAGCTGATTCTGATGACTCAGTGACTGAAGGAAACGGTACTTCCCATAT TTTCTTTCTGTTCAATTCCTTTATAGTAATGCACCTTTTGTGAAGTTTGATGATGGGGGAAATGTTTTTTCGAAGTTTTG GCCTGATCATCAAACCTGAAAGTTGATTTTGCTAAATGGTTCACATTTGACTTGTTATGTTAATGTTTAACCGTAGAAAG TAGAAACATAATTTCAAATCACATGAAATGTGTCTGTGATCAAAGTATGCCTTTTGCTTTTAGGAGCACCCGCCTTAAAA AATGCATGACTAACAGACTTTGCTTCTTTTATGCAGCAGGCTCTATCAATGTCAGCAACATTTTAACTGGGAAGTGTCTT GCCAAGATAAGAGCAAGCAACAGCTTCCCAATGGAGGACAATTGCAGTTGCTGTGAAACTTCTTCAGGTAACAGTTGTAA TTCCAGGAAGCGAAAGCATGCCTCCAAAATTAGGAGCACAGTTGCAGAAGCCCTGGAAGATATTACTGCTCTTTTCTATG ATGAAGACCGCAATGAGATCTATACCGGCAACAGGCACGGTTTAGTCCATGTCTGGTCTAACTGATGTATTATGGATTTA CTACCCTTTGTAAACTTCTTGGGTTTTTCTTCATGTGGACAAAAGATTTTCCGGATCTGCTTTATAGAACTTCTGGGAGT AGTAGCGCCATTGAGTGATCTTGTAATGTTCATTTTGTTCATCCGTACTTTGGCGCATTTGTTATGTAGTTAGTAACATA TCTGTATGGAAGTGCTATGCTGGTAACAGACCAGGTGTTGCTTCTGCTGTAATCTATATTTGGATTTATAGAGCGACTTT TTTGGATTGAAATTTGTGAATAATGCCTATCCTCTTCCCTGCCCACCACTTCGATTTTTCTCCTTTTTACCTTGTGGATA CTGGCCCATTCGTTTGTACATCACATGGATAGTACCTTGCCATATACGTGGTGAAGGTACAAAAGCAATCAATAATCAGT AGAGTGGTGACTTTACGATTTGCCAACCTTTCCACTTCAAGTTTCTGGTACTCCAATCAATTTACTTTTGTGTTCCGTTC TATCCAACTTTTGCTATGGTTTGCCAGCTGTCATTTAGTCAAGGCTAAAGCTGACATGTGAGCTTTGCCTCCCACTTCCT CTTAGCAAGGTTGTTGGGGATGAAAGCATG
CDS sequence (LotjaGi1g1v0303400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTGGTGGTGGGAGGAGGATCACGGTGAGCCCTCGACCTTGCTGTGGTCGGAGGGTTGTTGCGAAGAAGGGGCC GCGGCGTGGTGGTGCGGTCGATGGGTTTGTCAACAGCGTCAAGAAGCTTCAGCGGCGTGAAATCAGCTCCAAGCGTGATC GCGCTTTCACTATGACTGATGCTCAGGAGAGATTCCGCAACATTCGCTTGCAGGAAGAATATGATACTCATGATCCCAAA GGTCCTTCTTCGGCTGTGGTATTGCCATTTCTGAGAAGAAGATCGAAGATTATCGAGATTGTAGCGGCACAGGACATTGT TTTTGCTCTCGCCCAGTCTGGGGTTTGTGCAGCATTTAGCCGAGAGTCGAACCAAAGGATTTGCTTTTTGAATGTCAGTC CTGATGAAGTTATAAGAAGTCTGTTTTATAACAAAAATAATGACTCTCTTATCACTGTTTCTGTCTATGCTTCAGACAGT TACAGTTCTTTGAAATGCAGAAGCACAAGGATTGAGTACATAAGGAGGGGAAAACCTGATGCTGGCTTTGCTCTATTTGA ATCCGAGTCTCTCAAGTGGCCAGGTTTTGTTGAGTTTGATGATGTAAATGGGAAGGTTCTCACATTCTCTGCTCAGGATA GCATATACAAGGTGTTTGACCTGAAAAACTATACAATGTTGTACTCCATTTCTGATAAAAATGTCCAAGAGATTAAGATC AGTCCGGGGATCATGTTGCTGATTTTTGCCAAAGCAAGTAGCCATGTGCCGCTTAAAATCCTTTCAATAGAAGATGGTAC TGTTTTGAAATCATTCAACCATCTCCTTTATCGTAATAAGAAGGTGGATTTTATTGAGCAGTTCAATGAGAAGCTACTTG TGAAGCAAGAAAATGAAAACCTTCAAATTCTTGATGTGCGGACTTTTGAGCTAACTGAAGTTAGCCGAAGTGAATTTATG ACACCCTCTGCATTCATCTTTCTATATGAGAACCAGTTATTCCTGACATTCCGGAATCGGACTGTGGCTGTGTGGAACTT CCGTGGAGAGCTTGTTACTTCCTTTGAGGATCACCTCTTGTGGCATCCTGATTGCAATACAAACAATATATACATAACCA GTGACCAGGATCTTATCATATCCTACTGCAAAGCTGATTCTGATGACTCAGTGACTGAAGGAAACGCAGGCTCTATCAAT GTCAGCAACATTTTAACTGGGAAGTGTCTTGCCAAGATAAGAGCAAGCAACAGCTTCCCAATGGAGGACAATTGCAGTTG CTGTGAAACTTCTTCAGGTAACAGTTGTAATTCCAGGAAGCGAAAGCATGCCTCCAAAATTAGGAGCACAGTTGCAGAAG CCCTGGAAGATATTACTGCTCTTTTCTATGATGAAGACCGCAATGAGATCTATACCGGCAACAGGCACGGTTTAGTCCAT GTCTGGTCTAACTGA
Protein sequence (LotjaGi1g1v0303400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGGGGRRITVSPRPCCGRRVVAKKGPRRGGAVDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQEEYDTHDPK GPSSAVVLPFLRRRSKIIEIVAAQDIVFALAQSGVCAAFSRESNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDS YSSLKCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTFSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI SPGIMLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQILDVRTFELTEVSRSEFM TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDSVTEGNAGSIN VSNILTGKCLAKIRASNSFPMEDNCSCCETSSGNSCNSRKRKHASKIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVH VWSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 484 | 480 | 0.0 | – | |
| PANTHER | 5 | 484 | 480 | 0.0 | – | |
| SUPERFAMILY | 121 | 483 | 363 | 8.11E-16 | – | |
| Gene3D | 201 | 484 | 284 | 3.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0303400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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