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LotjaGi1g1v0305900.1

Overview

Field Value
Gene ID LotjaGi1g1v0305900
Transcript ID LotjaGi1g1v0305900.1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT3G56400.1 WRKY DNA-binding protein 70; Swiss-Prot: sp|Q9LY00|WRK70_ARATH Probable WRKY transcription factor 70; TrEMBL-Plants: tr|I3SHP6|I3SHP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0305900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:74515790..74520025) extracted from Lotus japonicus Gifu genome v1.2.

CATCAGCAAAGCATCAGCAAAAAACGTCATGGACGGGTTTGTAAGCCAAGCATTAATGATATTATCTGTGGAAAAATTGT TTTATCTCTTTCCACATTTCAACATCATCCCTCCCTTCCCAACATTTTCCACTCACTCGTGTCTCTCTTTCCTCGCAAAA CCCTACCCCTTTCTCTGTCTCTCCCCTGCACATTCAAGTTATCTTCTAAGCTTTATATAGCTAGCTACCATTATCAGGCA CATATATATACAACACCACCAACCAGCAAAATTTCCAACAAAACTAAGAAATAGATCGATCCAGCACAAAAAAAAAATAT GAATACTATGCTTTTCCCTGAAAGTGTCTCTGCCAAGAGAAAACAAGTGATCAGAGAGCTTGTGAAGGGTCGTGAGCATG CTACTCAGCTCAAGTTTCTGCTTCAGAATCTAAATGGGGGGTCTCTCTCAGCTAAGGAAATGGCGGCCAGTGTGCTCAGA TCTTTCTCCGTCTCTCTTTCTGTCATTACTTCTGATTCTTTATCTGAAGAAGCTGGTAGTGGTGGTGGTGGTGAGGTTGC TGATCAGAATCATAGTGAAGATGGGTCACTTGTGATGGCGGCGGCGGCTGCTGCTTCCAGCAATATTGGTCCTGAAGATT CAAGTGAGAGCTGCGGGAAGAGAATATTTGTGCAGGCCACAAAGGATCGGAGAGGTTCATACAAAAGAAGGTACATGACT CTTCCTCTTTTCCATTGTATATAGTTATGGATCTGATCTGTTCTTTACAGATTGGTGAATTGGGGTTTGTACGTACGGAC AGTGTCATTGTCATAACTCATAACTCATATGAAAAAGTAAAGATAAAAATTGAAGCTTTGAGTGGTTCATATGGAGAAAA AGACATTTTGATTTGATGGTATAAATTACAAAGGAGTTTGGGTTCGCAGAATCACTTATGAGAAGAAGTTTATGTGATTT CTGAGTAACTTTTGTGAGAAAAAGTAAATTGATCATGTTCTTACTAATGGAGTCAATTCTGATTATGCGTGTGTTTGAGT GAACATTTTAATTAAGCGTTTATGTTAATCAACGTTTATCACATAAGATTTTATTGATGAGAAATTGATCAAAAAGAAAC GGATGAAAATGAGTTAGGTTTTATTGATCATAAGCTAATTTGAACAGTTTTTAATTAAAATGAACTCAAAACAATTTTCG GGTAATGTAAGCCTAAACATTTTTTAAAACTGACAAACCCTTTTATAATTGCTTATATCATGTTATAAGATAAACTCAAA TGAACTCTCTCAAACATGTATTATGTTGGTTTTGTTTGGTGCTACAAAATTATGAGGGTTCAAATTCAAGTGGCAAGGAT TACCATAATTGCAAGGAAGCTTGGAGTCATATTTGCACTAATACTGTAGCCACACTATGCATTGCACTAAATGACATGCA TGACTGAAATTGTGTTGTGCAGGAAGAGTGAGCAGACACGGACCATTGTCTCCCCAACCACTGATGATGATCATTCATGG AGAAAGTACGGACAAAAGGATATCTTGAATTCTCAATTCCCCAGGTAATAATTGTTCTCCTCTCCTGTTCAATTTTCCAA GGAAAGATCTTTCCTCATTTGATTTATATATATGCACAAAATGTCTTGTCTCTTTCTATAGATATAAAAAAGAGTAAAAT ACACTCACCCCCCTCAAGGTTTGTAAGAATGACACTCCACCCCATTCTTTTTTAAATCTCACTCCACCCCATTTTTTATA AAGGCAAAATTTAGTGACGAAAACAAATTCGTCACTAATAAAAAATAATTACAAATTAGTTAAAATTTAAATAAGTTTAA TGCATTTACACTATCATACATTAATTTATGAAAATAATTTTACTGAATTAAATTTAAAAAAACAATCCACTCTGTCTGTT AAGTCCACGTCCCATCTGTCTCCAAATCATATTTCTCACCACAAACGGTCACCACCAAGCCTTTGCTCCCTTTAACACGA CGACCACTGTCCCAGAATGTGAAACCCCATGGCACCACCATGCATCAAAGTTTTGTTGCGACCTGAACCACAGAACGTGA ATCACACATTCCCAAAGCTACCTGTTCAACTACTTCTTGTGAACTTCACCCCCTTTAAGTTGCGAGCGAACGCTCTGTTG GTTTAAGATGTCGTTGGATTTTGTTAAAAACGGTGCTCCACCGCATCGTTGAGTTCTAATAACCTCCGATTCACTTCATA TTTCTTAATTTTGTTTCTCTATTTTCTTCACCCATTTGTCTTGCTTTTTGGGTCTACAATCCAATTTTCAAAATTTGAGG TATAAAGAGATTATTTTGATTAAAATTGAATTATTACCAAATATGAAAACACAAGCATGTTTCCCTATGTTCGAGATATG GTTTGTAAACCGGTCGGGTGTGTTATTGCAGAATTTGCATTGTGAATTTACGGAGGAAGACCACGATTGAGAGAATGAGG AGGACTGTGATGTTTTCATTTTTAAATTTATTGGATTATATTGAAAATATTTTTTGAAATTATTGATTAACAATTTAAAT AATAACTAATTATTAATGAAGAATATTTTTCGTCACTAAATTTGCATCTATATAAAATGGGGTTGGGTGTAGATTTTAGA CAAGAATGGGGTGGAGTGTAATTCTAATAAACCTTGAGAGGGGTGAGTGTACTTTACTCTATAGAAAACATTATCTTAAA AAAGAATGATTTTAACCGGCTTTTTGGGTGCATGAACACTACTACCTTTCTTAATCATACCAAAAGTTGAAATTAAACTC AACTTGTGCAAGTGCAAATTAATGAATGTGTAGAAGCTAGATATTTACTTTGTTTGGATATCAAATCAATCCTATACCAT ATGTTCTCTCTAATTTAGATATGATTGTTTTCAAGTTATTCTTAATCACTATAAAACTTAATAGTATATTGTGTTATAAA TCTTATATTAGCTAGAGATGGCACATAGATAATTTTTATAAAGTGTAGAACAATTCTTAATTATTGAACTAAATTTTAAG TTGAGTTGCAGTACTTTCCAAATTCTAATATGTATTAAAGTTAATCATAGATATGTTTGTTGGTGAAGACCTCTTATATT TGGGATTACCTCAGAAATGTTCAATCATACAAATTCCACACTCCAGATATCTAACGAATGTAAGAGAATGAGTTAGAAGT CTCACATTAACTAGAGATATGACTTAAATAACATTTATAAAGTGTAGAGTAATCTTCAATTCTTGATTTGTGTTAAGCCT TCTAAATTTTAATAAAATACTTATGTGTCAATTACATGAAGTCGGAAGAGGACATGAAAAAGTTTTCCTTGATTAGACAT CCAAACAACTAGTTATATAATTTGTTTTTTCTTTTCTTTTTCTCAAAAAAGCTTGTCTTCTAACTCACCCATTTGATGGC AATTTGCAGGAGTTACTTCAGGTGCACCCGGAAGCATGATCAAGGTTGCCGGGCAAACAAACAGGTGCAACGGATACAGG AGAATCCTGACATGTACCAAATTACATATATTGGGTTTCACACATGCAAAGACACTCCGATCAAAGCCCCAGAAATGGTC ACATTCTCTAATACTTGGGACTCATTCCTTGTGAATTCCCATCCTGACTCAAATGAACATCATGATCCAATTATAAAACT AGAATGTCCCTGCAGTGGTGAAACTCCAAGTGATGTTACTGGCAACAACTTGGATCATAGCCTGTGGTCTGAGTTGAAGG ATTTTGAGCTATCCAAACCTTCCAATATTATACCCTCAAGCAGTGCAGTTCATATGGATTTTGGGGTACTTTCTTCTCAT TTCAGCACTGACTTCCACTTTGAAGAAAATAATCTGCTCTATTCATCTTCGTAATGTAAACTACTAAGGTTGAATATTTT GCTTTTAATTACCTTTGCATTCATATGTACCACTATATTGCTGCCAGTTGTCATGGAATTTGTGGTCACGGGTTCGAGGA GTGAAATAACTCTTTTGTAAAAATGTAAGATAAACTGCTTACATTAGATTTATAAGGTGGATCTGAACATTTTCTACACC TCTCATATAACGGGAGCTTTATAGCACTACATTGTTTTTAAACTTTGCATTCATATGTATCATTAGAGGATCTCTTTGAT CACATCAATCAACTTATGTAATGCAAGCCAAACGATTGTGATTGGAAGGATGATTTGATTTATTAAGCTTTAAAAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0305900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATACTATGCTTTTCCCTGAAAGTGTCTCTGCCAAGAGAAAACAAGTGATCAGAGAGCTTGTGAAGGGTCGTGAGCA TGCTACTCAGCTCAAGTTTCTGCTTCAGAATCTAAATGGGGGGTCTCTCTCAGCTAAGGAAATGGCGGCCAGTGTGCTCA GATCTTTCTCCGTCTCTCTTTCTGTCATTACTTCTGATTCTTTATCTGAAGAAGCTGGTAGTGGTGGTGGTGGTGAGGTT GCTGATCAGAATCATAGTGAAGATGGGTCACTTGTGATGGCGGCGGCGGCTGCTGCTTCCAGCAATATTGGTCCTGAAGA TTCAAGTGAGAGCTGCGGGAAGAGAATATTTGTGCAGGCCACAAAGGATCGGAGAGGTTCATACAAAAGAAGGAAGAGTG AGCAGACACGGACCATTGTCTCCCCAACCACTGATGATGATCATTCATGGAGAAAGTACGGACAAAAGGATATCTTGAAT TCTCAATTCCCCAGGAGTTACTTCAGGTGCACCCGGAAGCATGATCAAGGTTGCCGGGCAAACAAACAGGTGCAACGGAT ACAGGAGAATCCTGACATGTACCAAATTACATATATTGGGTTTCACACATGCAAAGACACTCCGATCAAAGCCCCAGAAA TGGTCACATTCTCTAATACTTGGGACTCATTCCTTGTGAATTCCCATCCTGACTCAAATGAACATCATGATCCAATTATA AAACTAGAATGTCCCTGCAGTGGTGAAACTCCAAGTGATGTTACTGGCAACAACTTGGATCATAGCCTGTGGTCTGAGTT GAAGGATTTTGAGCTATCCAAACCTTCCAATATTATACCCTCAAGCAGTGCAGTTCATATGGATTTTGGGGTACTTTCTT CTCATTTCAGCACTGACTTCCACTTTGAAGAAAATAATCTGCTCTATTCATCTTCGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0305900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNTMLFPESVSAKRKQVIRELVKGREHATQLKFLLQNLNGGSLSAKEMAASVLRSFSVSLSVITSDSLSEEAGSGGGGEV ADQNHSEDGSLVMAAAAAASSNIGPEDSSESCGKRIFVQATKDRRGSYKRRKSEQTRTIVSPTTDDDHSWRKYGQKDILN SQFPRSYFRCTRKHDQGCRANKQVQRIQENPDMYQITYIGFHTCKDTPIKAPEMVTFSNTWDSFLVNSHPDSNEHHDPII KLECPCSGETPSDVTGNNLDHSLWSELKDFELSKPSNIIPSSSAVHMDFGVLSSHFSTDFHFEENNLLYSSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31282
10 306 297 1.3E-76 –
PANTHER
PTHR31282:SF110
10 306 297 1.3E-76 –
MobiDBLite
mobidb-lite
123 147 25 - –
Gene3D
G3DSA:2.20.25.80
128 207 80 3.4E-24
IPR036576
SUPERFAMILY
SSF118290
141 205 65 3.01E-24
IPR036576
SMART
SM00774
144 206 63 8.2E-35
IPR003657
Pfam
PF03106
145 205 61 1.3E-24
IPR003657
ProSiteProfiles
PS50811
145 202 58 18.739
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0305900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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