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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0306400 |
| Transcript ID | LotjaGi1g1v0306400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT3G56380.1 response regulator 17; Swiss-Prot: sp|Q9FPR6|ARR17_ARATH Two-component response regulator ARR17; TrEMBL-Plants: tr|A0A151SG03|A0A151SG03_CAJCA Two-component response regulator ARR17; Found in the gene: LotjaGi1g1v0306400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74693283..74695523) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGAAACCAAAAGGTGGTGGGGACTGAAATCAAATCCTTAGATACCCGAAAAGGATCACGAAATATCTGTGACTCCAT AATCTATCTCTCTCTCTCTCTCTGCTACAGATACAAACTCTGATTCTCTCTTTCTCTCTCTGTGGTTTTTCCAAAATTCC TCACCCACCAACCACAACCTTCGAATTCATTTCCATTTGCTCTGTCCTTGTATATATATACATGACATCGTTATGTTCAT ATCATCCATCTCTTGTGACTTTCAACTTTTGTTCTTCTTTTCTTTCTCTCTTCATTTATAAACAGGTCTTGTCACCATTG CCGTTTTGTTTTTCTTTTCGTCCTGTTTCTATCTACTCCACAATTAATGTTATTGCAGCCTCTTTTATTGCAACTGCGTT ATTACCTTGTGTTACATTGCATAGCATTTTGTTAAGGTTATTTATTGAGATCAATTGGGAAACGCATGGCTTCTACAGGT TCTTCATCTTCAAATTGGGTCATGGAAAGTGGTGATATTCCTCATGTTTTGGCTGTTGATGACAACCTTATTGATCGCAA ACTTGTTGAAAAACTGCTCAGGAATTCTTCTTGCAAAGGTAAGGGTAGCTACCACATTCTCTCTGTTTTTCTTCCTTCTC TTTTAGTTTTTGAAGAAAGAATCAATTTTGGGTTGGTGGGTAGTTTTTTATTCCAAAATTAATTATGAGAAAAGAGAAGT TGATCTAGATATGCTGATATGCATGCTGCTACATGTTTTTACTCATGAGAAATGTAAATGTCCAGTTATAGCTCAATATA TCTTATTGTGTTTGATGCCTTTCATGTTGATGTTTCTGTTTGAGAAAAAAAATCTAATTTTTGTCATGCTTGTTTGCTAA ATGCTATTGGCTGCAGTTACCACTGCAGAAAATGGGCCAAGGGCATTGGAGTTCTTGGGCTTAACAAGTGGTGAACAGAA CACCTTGAATGGGGTAAGTCTTCTCTTTTCACTTTTCAGACTAATCAAACTTTTAGACCAAGAAAGGAAAAAGACTAATT AAAGTTCATTCTATAGTTGTAAACACATTTTTAACCAATTTGTTGCATGCTAACTAGCTTGAGTTTTTGCTCCTTTGTAG AGATCCAAAGTAAATTTGATTATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGCTACTCAAGAAAATCAAGGT ATTAAGTTTTGTTCTGGTATATACACTGACATTTATAGCATATTCAATGTAACCCTAGCCACTTCTGAAATGGTAAGATC ACCGGCACAAGAATGCAAAAAGAGGGGTTGTTGATCCTTGTCTTCTGATTCAGTTCTGATTTTTCTAATTTTTTTAAGAA TTAAGCCTACCGGGAATCGAGTTCTTCCCCTACCCATAGCAAATAGAAGATGTTGAGTCAAATCTTCTTCATGGAAAACC TGCTTCATTTTGATGGGGAAAATCTCAAATTTTATTTTGCCATAATCAATTTTGACTTTCAAACACTACTTATATAAGCT TACATCTTTAGAATTGATTGTCTTTAGAATTGATTTCGCCTTTATAGTTGCATTTAGTGATATATAACACTAACCATCAC AAATTGCACTGTTCTTCAAACAGGAATCATCTGCAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAATATTCCA ACACGGATTAACAAGTAATTCCTAGTTTTAGGCTTTTCATCCTCCTACTCTCTCATGTGCTTACATTCTATTGTTCAATG TACTCAATCATTGTTTTGCTTAAACCAGGTGCCTGGAAGAAGGAGCTCAAATGTTCATCCTAAAGCCCCTCAAACAATCT GATATAAAGAAATTGATGAAGCTAGGAATGTGAAATTCAACTTTTAAAATCTGAACCTTAGGCCTTAACCAGAATGTAAA CTGTCTAATTGTAGTAGCTTAGGAGTAGGAATGCATATCATTGTTTTTTGAGTACATTCTGCATATTGTTTTGATGATGC TGAACTTCGGTCTCTTTCTCTCTTTTTTTGTATTAATCTATATATAACAATTTATTTTCTTAGTGTATACTTCATTTTAT TTTATTTTGTTCTTTTATGAAATTGTGGTCTGGTTGGTATTGGAGCATCATAGATTCATAGCTCTGTGTTACAAACTTAC AATAAAAATTAAAAAGCACTCAAACTCTCTTGCTGCAAAAAATAATAGTTAATGTAGGCATTTCTTGTTACTAGAGGAGA G
CDS sequence (LotjaGi1g1v0306400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTACAGGTTCTTCATCTTCAAATTGGGTCATGGAAAGTGGTGATATTCCTCATGTTTTGGCTGTTGATGACAA CCTTATTGATCGCAAACTTGTTGAAAAACTGCTCAGGAATTCTTCTTGCAAAGTTACCACTGCAGAAAATGGGCCAAGGG CATTGGAGTTCTTGGGCTTAACAAGTGGTGAACAGAACACCTTGAATGGGAGATCCAAAGTAAATTTGATTATCACAGAC TATTGCATGCCAGGGATGACAGGCTATGAGCTACTCAAGAAAATCAAGGAATCATCTGCAATGAAGGAGGTTCCAGTAGT GATCATGTCATCTGAGAATATTCCAACACGGATTAACAAGTGCCTGGAAGAAGGAGCTCAAATGTTCATCCTAAAGCCCC TCAAACAATCTGATATAAAGAAATTGATGAAGCTAGGAATGTGA
Protein sequence (LotjaGi1g1v0306400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTGSSSSNWVMESGDIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITD YCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDIKKLMKLGM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 142 | 129 | 5.0E-69 | – | |
| PANTHER | 14 | 142 | 129 | 5.0E-69 | – | |
| Gene3D | 17 | 146 | 130 | 9.4E-34 | – | |
| SMART | 19 | 143 | 125 | 3.9E-22 | ||
| SUPERFAMILY | 19 | 143 | 125 | 2.13E-27 | ||
| ProSiteProfiles | 20 | 147 | 128 | 33.048 | ||
| Pfam | 21 | 142 | 122 | 7.7E-23 | ||
| CDD | 22 | 144 | 123 | 8.45843E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. |
Expression pattern of LotjaGi1g1v0306400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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