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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0307800 |
| Transcript ID | LotjaGi1g1v0307800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Potassium transporter; TAIR: AT3G56290.1 potassium transporter; Swiss-Prot: sp|A2SPV6|SYI_METLZ Isoleucine--tRNA ligase; TrEMBL-Plants: tr|I3SEW0|I3SEW0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0307800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74880287..74882064) extracted from Lotus japonicus Gifu genome v1.2.
GCTCCCTAGGGTGCCACATAGTCATGTATTAACCACCAGGTTTTGTGAGTGGTAGCAGTGCTATGGACAAATGGACCAAC ACTTGTGGCTACAATTTGTGGCTCAAAAACTTAAATCAAACCCACTCATATGCACATATATACAACATAATATGCAGAGT TCAGAGCCAGGGTGCTGAATGCTTAGAGTTAGAGAAGCTAAAATGGGACTTGGAACTCTGCCGTTGACTCCATCTTATAG AAGTTTCCCTTCAAACTCTGGACTTGTACAAAGCACTAATCACAGCATGGTCAACAGGAGCATAAAATTCTCTGTTTCAG CCAAACAAGAGAAGGAAGAAGAACCAAAGAAGAAAAAACAATCTTTGTTCAGCAGCGTAACCGAAGCTCTTGATTTTTCT CAAGTGAGATCTGCAGAAGATGCTCAGCTTATAGACGAGGCCAGAGAAGCCACAACTTCTGGAGAAAGGATGAGCAGGGA ACAGGTATATATCATAAATTCATAATCTTCCAACTCATACTGATTACATAAAGTGGCAAATTTTTTAGCATATTTTGTTC TTTGTAATCCTGCTCACTAATTATTATTTTTTCTAATATGATGCAGTATGGAGCTCTTAGAAGGAAAATTGGTGGGACAT ACAAGGATTTTTTCAAATCTTATGTAGAAGGTACAAATACTATCTACTTATTCTTCTATAAAATGTATTTTTATCTTTCA AACCATTGAGAAAATATAGCACGTTTGGATCAACTTAATCAATTTTGTCACCTAGAGAGTAGAAACTACTAACAGAAGCT TATACTCAGAGTTGATTTACACTTTAGAATTAACTGAAGAAATATTTTCAAACATGCTATTGGTCTGTTCCTTGAACTTG AATTGTTTCCTATTGAAAAGAAAGCATTGTTCATTTTCTTCTTTGACTATTGAAAATCTGCACAAAATGTTAATTTTCTG CTAATGGAAGTCTTTACAGAATGTACTTCTTCTACTAACAATAGAAAGAGAACGCTCATGACCTTCTAATCTAGCTGCTA ATTTTCTTTTCAGTCTGAATTAGACTTTGGTTATCCAATTCTAACACCAATTAGCATTTTTCAGTTTAATGTTTTCTGTT TGGCTTAGCAACAAAGCTAAAACATTTTTTTTCCAATTGAGCAGTGGATGGGGCATATGTTGAAGAGGGCTGGGTTGACA AAACTTGCAAGGTGTGCAAAAAGGACACCAAGGGAGAGGCAAGGCAAGTGGACAATTTGGGAAGGTATGTTCATGTAGCA TGCCTAGAGAAGTCGAAAACCGGAAACTTCTTTACCAGACTGTTCTCTAGATGAAGAGCAATCACGAACATTGGCGCGGT AGGGGAGAAAAGACATGTTCTCAATTAGTCATATACACAAGGATTCCAATTCTCAAATTAGATTCTCAGCTTCTGTATTG GTTATTAAATGAATGAAAGTGAATATATATTCTTCATTGGCCATGTGAATGATGGCAAATCTTAACATTTTTTTTTCTCT CAAGGTTTTATTGCCTTAGGCCTTACAACTCCATTTTTAACTACCTATCTATTCAGGAAACAAGTAAAAACCAACAATTT TAGAAAACCAAGAACTAGTTCCTAAAACAAGCAGATACTAAGGCATGATCTCAGTGTTAGAAGTTTGGGTATGATAATCC TGGATAACTTAGAAGAATTGTGTTCGTACACTTTCCGACCAAAGTATTTCGACCCTATTATTGCCTGGCTTCACGAAATC CTTGTTGGGATAATTCTT
CDS sequence (LotjaGi1g1v0307800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAGAGTTAGAGAAGCTAAAATGGGACTTGGAACTCTGCCGTTGACTCCATCTTATAGAAGTTTCCCTTCAAACTC TGGACTTGTACAAAGCACTAATCACAGCATGGTCAACAGGAGCATAAAATTCTCTGTTTCAGCCAAACAAGAGAAGGAAG AAGAACCAAAGAAGAAAAAACAATCTTTGTTCAGCAGCGTAACCGAAGCTCTTGATTTTTCTCAAGTGAGATCTGCAGAA GATGCTCAGCTTATAGACGAGGCCAGAGAAGCCACAACTTCTGGAGAAAGGATGAGCAGGGAACAGTATGGAGCTCTTAG AAGGAAAATTGGTGGGACATACAAGGATTTTTTCAAATCTTATGTAGAAGTGGATGGGGCATATGTTGAAGAGGGCTGGG TTGACAAAACTTGCAAGGTGTGCAAAAAGGACACCAAGGGAGAGGCAAGGCAAGTGGACAATTTGGGAAGGTATGTTCAT GTAGCATGCCTAGAGAAGTCGAAAACCGGAAACTTCTTTACCAGACTGTTCTCTAGATGA
Protein sequence (LotjaGi1g1v0307800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRVREAKMGLGTLPLTPSYRSFPSNSGLVQSTNHSMVNRSIKFSVSAKQEKEEEPKKKKQSLFSSVTEALDFSQVRSAE DAQLIDEAREATTSGERMSREQYGALRRKIGGTYKDFFKSYVEVDGAYVEEGWVDKTCKVCKKDTKGEARQVDNLGRYVH VACLEKSKTGNFFTRLFSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 179 | 171 | 8.3E-82 | – | |
| Pfam | 50 | 125 | 76 | 5.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Positive regulation of transcription, DNA-templated | Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0307800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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