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LotjaGi1g1v0308300.1

Overview

Field Value
Gene ID LotjaGi1g1v0308300
Transcript ID LotjaGi1g1v0308300.1
Lotus japonicus genome version Gifu v1.2
Description tRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT3G56330.1 N2,N2-dimethylguanosine tRNA methyltransferase; Swiss-Prot: sp|B6YUU9|TRM1_THEON tRNA (guanine(26)-N(2))-dimethyltransferase; TrEMBL-Plants: tr|A0A151TQY3|A0A151TQY3_CAJCA N(2),N(2)-dimethylguanosine tRNA methyltransferase; Found in the gene: LotjaGi1g1v0308300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:74981031..74985247) extracted from Lotus japonicus Gifu genome v1.2.

CCTTAAAAACTGCTCCCTTTATGAAAATGAAAATGGTGTGGTGGGGTGGTGGCAAAACAAGCAACCAAGCTCAGATGGAT CAAAACCCTAGAGCAGCAGCAGCAGCAGCCGCAGCCGCAGCCTCCTCCTCCTTCTACCACCTGAAAGTCATCATTGATTG ATTCCGCTCCCACCCACTATGAACAAACACGGTTGTACTTGTTTTAAAAAACCCAACATAGATTTTCAAAACCCCATGTT TCAATCCTAGGTTCTTACTATAACATAACATAACGCGTGTAACTGAACAATCACACACACACACACACACACACACAAAC TGATGATAATGATAATCTGGTGGGGATCGGAAATAATGTGAACACATCTGAACCATCCATTTCTTTTAAAAGAAGAGTAA ATAGTGGGTTTTATCAATGTTTGATGTACCTGATTCAGCCCTTGATTGTGATTGTGATTGTGATTGTGATTGTGTTTAAA ACAAATATTAAATGGATGGTCCAGATGTGTTCACATTATTTCCATTTAATATAAAGCCAAAGACAGTTACTTACTACCCT CTTCCGTCATCAGTTTCCGGCCATGTTCACTCTCACATTTTCTCCTCCTCATTTTGTGAAAAAACTCGGATGTCACTCTG AAAGGGGTGTTCAATTTGACACCGGCGGTGCGTTTTTCCGGGAAGAAAGCGCCACCGCCCGTGACCTTGGTGTTCTCGCT GCTGCCCTTCAGAGGAAGGCTAATGGGAGTTTGCGTGTTCTTGATGCTCTTTGTGGGTGTGGGATTCGCTCGTTGCGCTA TTTGGCGGAGGCGGAGGCGGATTTTGTGGCTGCGAATGATGGGAATGAGAGCTATGGAAGGACCATTGTTGGGAACTTGG AGAGGGCTGCCAAGGAGGACGAGGGGAGGTGGGTGGTTACTCATTTGGAAGCGAATCGTGTGATGACTGGTTATTATTTG CACAAGAGTTTGTTTGATTTTGTTGATGTTGATTCGTTTGGAAGTGATTCTTCTTTCTTGAGATCCGCTATGAATGCTTT GAAGCTTGGTGGTTTGCTCTATGTTACTTCAACTGATGGCTATTCTTCTGGTGGTCACCGTCCTCATCAGTAAGAATCAA TTTCCATTTTTTTATATTTTCTGCTCCTTATTTTTAGCTAAGTTTGTTAGGTGTGAGTGTGTGAGATTCATTCTTCAAAT GTGTAAAACAAAATATGCTACTAATAAGGGATTATTCTATGATATTTGTTTTGAATTTGATCATGTCTTATGACTTTTTC ATTATTTTTGTTTGTTAGGGAAGGGTCTCTTCTCTCTGCGTCACTCATCATATCTCTTATTTCTCGGTCGCTCTTTTATG TAACATTAGTAATTGAATATTTGCATCTTGTATTTTTAATGGATTTGGGGACCCATTGGTTGGTAGTTATATAACTTCTC TTACTCTTTTCCCTAGTTCTTTAGCTGCATATGGATCCTATGTGCGCCCTATGCCATTTTCGAATGAGATTGGTTTGCGA ATGCTTATAGGTGGGGCGGTAAGGGAGGCTGCAGTGTTGGGGTATCACATTACTCCTTTATATTCGTACTATGCTTATCA TGGACCTGTTTTCAGAGTCTTGCTCAGATTAAATCGTGGGAAGATTCATGACAGCAGGTGATGTTTGATTCTGATTCATA TTTCTTCTTGTTAAGTGTTTGTTTTCCTTTTGTTCTCGTTTGATTTAAATGCTTTGATGCTATTTTATTCATTGCTTTTA TGATTACTGTAGGCATTATGGTTATATTGGGTTTTGCCACAAGTGTGGAAATTCCCATGAATTTTCTTGGGATCAGCTTG GCCAGTTCAGTTGCTCCTGCAGTATGCCACAGGTATGGTATGGTTTGTTTAGACTTCATGTGTGTTTGGGTACCTGTTGA GTGTAATGCGAACGTATTTTCATCACAGTCCATGAGAAGGAATTTGTCATTCATTTTTTTATCTTGATGTGCGTGTTAAT GTTCATTTACACCAATATCAGCGGATATCCAAACATAGTCAATTTTGTTCATATTTGTTTATTGGTTGACTATCTTTGTA ATTTTTAACTTGTTTTGTCAAGAAATTTTGCTAGATAATCTCTTCTTACTTCTTAGATTTTAATGCTAAATTCCTATTTA AATAGTTACTGCAAATGACATGATAAGTTCCAAGTATATTAATTGATTTCCCTTCTTAGTATGCTTTTACTTGGTCATAG TAAGCTCTTATCTAAGACATCTAAGATGTGGAAAAATCTCTTATGTACTCATATGATTCACATGTTTTTCTTTGCCATTT CTGTCGGTTGTTCTAAAGAATGATTAATGGAGCAGGAATAAGGAAACTACAGATAAATGTTAGTTCCTGTGAAAGTATAA ACTTTTCTTTTTTCAGGTTTCAAACTCCCTTGTGGTGTCTGGACCTCTTTGGACAGGGCCCCTTCACGATGCGGCGTATC TTACGGACATGTTAAATCTAGCAAAGCAGTGGGGATGGATTGGTTGTGACGGCAAAGACAGTCTTGAAAAGCTTATCAAT GTGATGGTGGATGAAAGTGACCCCAAGTTGCCATTTGGGTATATCAAGTTAGATGAGGTGCTTCTTCTTGAAGTGCTGTT GCATTGTCAAAATAATGTTTAGCTACTCTGGTTAGAATTATGAGTTATGGCAGTTTTTGGTGTATTTATGCAGATGGCAA GCCGCGCGAAAATTAATTCTCCACCTCTGAAGACCTTGATGAGCGCTATTCAACAGGTACTCTGATTTTTTTTAATATGT TACAATTGTGTTATAGGACCATTTTTTCAATTGTATGCCTAATTCAAATACTACAAAATGAACACCTATGTTAAGCCATG AAATATTTTATGACTTAGAATCCAGTTGTTCACATGGCACAGTACATCTTTAGATAAATGGTCCAAAACTTTACAAAGTT TCTAAAACTGATTGGATTCCTTATGAGTATACCAAAACAATAAATGAAGGGAGTTTCCTTTTATTCTGTATGACTAAAGA CATTGTAGAGCTTCTCAACCACCCCAATTCCTCTTGACTGGGTTGACTCCATCTTTATGCTGTTGAGATTCACTTGGTCT GTAACATCCTTCGTCGAGAACATTGGACCATAGAATATTCATGTTGACGCTAGAGAAAACTTTAGAAACCAGACATCTAC TTACCTTCTATGTTTGCTTATTGCAGAAGGGTTATGCTGCCAGCAGGTCTCACATAAAAACAAATGCAATCAAGACGAAT TGCCCCATGACTGAATGCATTAGTATTGCCAAAGAACTACTGCAGGTTTCTGTCTCTTCGTGATTTTGGTGCTGAAGACT CCTCTGGGGATAAATCCACACACATTGCTGTCACAGCAAACAAAGCATTGGTTAATGCTCACAAATGTTGAAGGGCATAT CTACTTTCTTGGTCATATTGCAAGTTTTGTGACCTAACATCTGCAAGCTAATATGGATATGCCCTGATAGTTATTTGATT ATTTAATTGTCAATGAAATGGTAATGCATTGCATTGCATAAGCACCCCCAACATCATTCTTATAACATTTTTGGATAAAC TTCTCATCAAGAAAACTACAAATAGAAAGAAAGACATTGGGAGGTGCTCCCAAACCAGATCATGCAAGATGAAGTTGACA TGAATTATTTGGTCCTCTAATCCATAATGGTTGAACCAGAAGAGTGGATCTTGCATCACCAATCACTTTCATATCCATTC TATAGAAATTTTCAAAGTTCCAAACATAAAATGGCTGCAAGTCTTGAGAAAATGATTAATGAAACTGGTGGAGCGGATAA TACCAGCTCTTGAATCTGTATTTGCAACAGTGACATGTATTTTGTGTTTGTGTTGAATCCATTGGTTATTGCAAGCGGTA GTTTCGTTGCTTGAACACATGAAGCAAGAACTCCAGTGAGCTTTATTGTTGCTTAAGCTATGTTTAAGCAATGATGTTTA GAAAAACGGAAATGATTTCTCTACCCGAAATACGCAAATTTTGAGCGTCAGACCTGTATTATGTTTTCTTAGATGTTAGA TTTTGTGACAGTCAAAAACTAACACAAATATTGTGTGTGGGTTGGATGTTGCCCAAACTCAGGGTTCATATAACGAGACT GTAAAAACTAAAGCTATATTTGGACATTCATTGGAACCAGTATATATTGACATTGAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0308300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCACTCTCACATTTTCTCCTCCTCATTTTGTGAAAAAACTCGGATGTCACTCTGAAAGGGGTGTTCAATTTGACAC CGGCGGTGCGTTTTTCCGGGAAGAAAGCGCCACCGCCCGTGACCTTGGTGTTCTCGCTGCTGCCCTTCAGAGGAAGGCTA ATGGGAGTTTGCGTGTTCTTGATGCTCTTTGTGGGTGTGGGATTCGCTCGTTGCGCTATTTGGCGGAGGCGGAGGCGGAT TTTGTGGCTGCGAATGATGGGAATGAGAGCTATGGAAGGACCATTGTTGGGAACTTGGAGAGGGCTGCCAAGGAGGACGA GGGGAGGTGGGTGGTTACTCATTTGGAAGCGAATCGTGTGATGACTGGTTATTATTTGCACAAGAGTTTGTTTGATTTTG TTGATGTTGATTCGTTTGGAAGTGATTCTTCTTTCTTGAGATCCGCTATGAATGCTTTGAAGCTTGGTGGTTTGCTCTAT GTTACTTCAACTGATGGCTATTCTTCTGGTGGTCACCGTCCTCATCATTCTTTAGCTGCATATGGATCCTATGTGCGCCC TATGCCATTTTCGAATGAGATTGGTTTGCGAATGCTTATAGGTGGGGCGGTAAGGGAGGCTGCAGTGTTGGGGTATCACA TTACTCCTTTATATTCGTACTATGCTTATCATGGACCTGTTTTCAGAGTCTTGCTCAGATTAAATCGTGGGAAGATTCAT GACAGCAGGCATTATGGTTATATTGGGTTTTGCCACAAGTGTGGAAATTCCCATGAATTTTCTTGGGATCAGCTTGGCCA GTTCAGTTGCTCCTGCAGTATGCCACAGGTTTCAAACTCCCTTGTGGTGTCTGGACCTCTTTGGACAGGGCCCCTTCACG ATGCGGCGTATCTTACGGACATGTTAAATCTAGCAAAGCAGTGGGGATGGATTGGTTGTGACGGCAAAGACAGTCTTGAA AAGCTTATCAATGTGATGGTGGATGAAAGTGACCCCAAGTTGCCATTTGGGTATATCAAGTTAGATGAGATGGCAAGCCG CGCGAAAATTAATTCTCCACCTCTGAAGACCTTGATGAGCGCTATTCAACAGAAGGGTTATGCTGCCAGCAGGTCTCACA TAAAAACAAATGCAATCAAGACGAATTGCCCCATGACTGAATGCATTAGTATTGCCAAAGAACTACTGCAGGTTTCTGTC TCTTCGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0308300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFTLTFSPPHFVKKLGCHSERGVQFDTGGAFFREESATARDLGVLAAALQRKANGSLRVLDALCGCGIRSLRYLAEAEAD FVAANDGNESYGRTIVGNLERAAKEDEGRWVVTHLEANRVMTGYYLHKSLFDFVDVDSFGSDSSFLRSAMNALKLGGLLY VTSTDGYSSGGHRPHHSLAAYGSYVRPMPFSNEIGLRMLIGGAVREAAVLGYHITPLYSYYAYHGPVFRVLLRLNRGKIH DSRHYGYIGFCHKCGNSHEFSWDQLGQFSCSCSMPQVSNSLVVSGPLWTGPLHDAAYLTDMLNLAKQWGWIGCDGKDSLE KLINVMVDESDPKLPFGYIKLDEMASRAKINSPPLKTLMSAIQQKGYAASRSHIKTNAIKTNCPMTECISIAKELLQVSV SS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.150
14 331 318 1.9E-71 –
PANTHER
PTHR10631:SF9
16 397 382 4.1E-202 –
ProSiteProfiles
PS51626
16 392 377 92.479
IPR002905
PANTHER
PTHR10631
16 397 382 4.1E-202
IPR002905
SUPERFAMILY
SSF53335
22 393 372 7.42E-81
IPR029063
Pfam
PF02005
31 391 361 1.6E-61
IPR002905
CDD
cd02440
58 162 105 0.00233425 –
Gene3D
G3DSA:3.30.56.70
335 395 61 2.6E-12
IPR042296

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0004809
Molecular function TRNA (guanine-N2-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing guanine = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine.
Subterm of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0308300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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