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GO:0008033

Overview

Field Value
Namespace Biological process
Short description TRNA processing
Full defintion The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of

Relationships

The relationship of GO:0008033 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
PMID
tRNA transfers to the limelight.
Genes Dev. ; 17 (2): 162–80.PMID: 12533506

Associated Lotus transcripts 75

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
PREDICTED: tRNA-dihydrouridine(20) synthase [NAD](P)+] gi|502154498|ref|XP_004509720.1| 4
PREDICTED: tRNA-dihydrouridine synthase A-like isoform X3 [Cicer arietinum] gi|502127969|ref|XP_004499894.1| 4
PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max] gi|356537294|ref|XP_003537164.1| 4
PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max] gi|356537294|ref|XP_003537164.1| 4
Ribonuclease P protein subunit p30 [Medicago truncatula] gi|357454041|ref|XP_003597301.1| 2
Ribonuclease P protein subunit p30 [Medicago truncatula] gi|357454041|ref|XP_003597301.1| 2
PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 1-like isoform X2 [Cicer arietinum] gi|502148855|ref|XP_004507296.1| 3
PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 1-like isoform X1 [Cicer arietinum] gi|502148853|ref|XP_004507295.1| 3
Adenylate isopentenyltransferase [Lotus japonicus] gi|90421410|gb|ABD93934.1| 1
Adenylate isopentenyltransferase [Lotus japonicus] gi|90421410|gb|ABD93934.1| 1
PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog isoform X1 [Cicer arietinum] gi|502123768|ref|XP_004498251.1| 2
PREDICTED: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1-like [Glycine max] gi|356518704|ref|XP_003528018.1| 3
PREDICTED: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1-like [Glycine max] gi|356518704|ref|XP_003528018.1| 3
Cytoplasmic tRNA 2-thiolation protein [Medicago truncatula] gi|357467587|ref|XP_003604078.1| 1
PREDICTED: tRNA-dihydrouridine synthase 3-like [Glycine max] gi|356508136|ref|XP_003522816.1| 4
PREDICTED: tRNA-dihydrouridine synthase 3-like [Glycine max] gi|356508136|ref|XP_003522816.1| 4
TRNA(Ile)-lysidine synthase [Medicago truncatula] gi|357500613|ref|XP_003620595.1| 4
PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Glycine max] gi|356500813|ref|XP_003519225.1| 2
PREDICTED: zinc phosphodiesterase ELAC protein 2-like isoform X1 [Cicer arietinum] gi|502081097|ref|XP_004486765.1| 1
PREDICTED: tRNA dimethylallyltransferase 9-like [Glycine max] gi|356549681|ref|XP_003543220.1| 1
TRNA isopentenyltransferase [Lotus japonicus] gi|158702919|gb|ABW77761.1| 1
TRNA isopentenyltransferase [Lotus japonicus] gi|158702919|gb|ABW77761.1| 1
PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cicer arietinum] gi|502148249|ref|XP_004507093.1| 2
PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cicer arietinum] gi|502148249|ref|XP_004507093.1| 2
PREDICTED: tRNA-dihydrouridine synthase A-like isoform X2 [Cicer arietinum] gi|502146150|ref|XP_004506326.1| 4
4
PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD](P)(+)] gi|502152821|ref|XP_004509110.1| 4
Adenylate isopentenyltransferase [Lotus japonicus] gi|90421408|gb|ABD93933.1| 1
PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like isoform X2 [Cicer arietinum] gi|502183352|ref|XP_004517119.1| 2
PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like isoform X2 [Cicer arietinum] gi|502183352|ref|XP_004517119.1| 2
TRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Medicago truncatula] gi|357520027|ref|XP_003630302.1| 2
Adenylate isopentenyltransferase [Lotus japonicus] gi|90421410|gb|ABD93934.1| 1
Adenylate isopentenyltransferase [Lotus japonicus] gi|90421406|gb|ABD93932.1| 1
Ribonuclease P/MRP protein subunit POP5, putative; TAIR: AT1G04635.1 ribonuclease P family protein / Rpp14 family protein; Swiss-Prot: sp|Q6AWV1|POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5; TrEMBL-Plants: tr|C6T5D2|C6T5D2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0127900 2
TRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT3G56330.1 N2,N2-dimethylguanosine tRNA methyltransferase; Swiss-Prot: sp|B6YUU9|TRM1_THEON tRNA (guanine(26)-N(2))-dimethyltransferase; TrEMBL-Plants: tr|A0A151TQY3|A0A151TQY3_CAJCA N(2),N(2)-dimethylguanosine tRNA methyltransferase; Found in the gene: LotjaGi1g1v0308300 3
TRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT5G15810.1 tRNA (guanine(26)-N(2))-dimethyltransferase; Swiss-Prot: sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1; TrEMBL-Plants: tr|A0A151RGF2|A0A151RGF2_CAJCA Putative N(2),N(2)-dimethylguanosine tRNA methyltransferase 2; Found in the gene: LotjaGi1g1v0516800 3
Cytoplasmic tRNA 2-thiolation protein; TAIR: AT2G44270.1 repressor of lrx1; Swiss-Prot: sp|O64862|CTU1_ARATH Cytoplasmic tRNA 2-thiolation protein 1; TrEMBL-Plants: tr|G7J985|G7J985_MEDTR Cytoplasmic tRNA 2-thiolation protein 1; Found in the gene: LotjaGi1g1v0556900 1
Cytoplasmic tRNA 2-thiolation protein; TAIR: AT2G44270.1 repressor of lrx1; Swiss-Prot: sp|O64862|CTU1_ARATH Cytoplasmic tRNA 2-thiolation protein 1; TrEMBL-Plants: tr|V7AXH9|V7AXH9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0556900 1
Cytoplasmic tRNA 2-thiolation protein; TAIR: AT2G44270.1 repressor of lrx1; Swiss-Prot: sp|O64862|CTU1_ARATH Cytoplasmic tRNA 2-thiolation protein 1; TrEMBL-Plants: tr|G7J985|G7J985_MEDTR Cytoplasmic tRNA 2-thiolation protein 1; Found in the gene: LotjaGi1g1v0556900 1
Cytoplasmic tRNA 2-thiolation protein; TAIR: AT2G44270.1 repressor of lrx1; Swiss-Prot: sp|O64862|CTU1_ARATH Cytoplasmic tRNA 2-thiolation protein 1; TrEMBL-Plants: tr|G7J985|G7J985_MEDTR Cytoplasmic tRNA 2-thiolation protein 1; Found in the gene: LotjaGi1g1v0556900 1
TRNA-dihydrouridine(47) synthase [NAD](P)(+)]; TAIR: AT4G38890.1 FMN-linked oxidoreductases superfamily protein; Swiss-Prot: sp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD](P)(+)]-like; TrEMBL-Plants: tr|K7KHG3|K7KHG3_SOYBN tRNA-dihydrouridine(47) synthase [NAD](P)(+)]; Found in the gene: LotjaGi1g1v0562300 4
TRNA-dihydrouridine(47) synthase [NAD](P)(+)]; TAIR: AT4G38890.1 FMN-linked oxidoreductases superfamily protein; Swiss-Prot: sp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD](P)(+)]-like; TrEMBL-Plants: tr|K7KHG3|K7KHG3_SOYBN tRNA-dihydrouridine(47) synthase [NAD](P)(+)]; Found in the gene: LotjaGi1g1v0562300 4
TRNA:m(4)X modification enzyme TRM13-like protein; TAIR: AT4G01880.1 methyltransferase; Swiss-Prot: sp|Q9NUP7|TRM13_HUMAN tRNA:m(4)X modification enzyme TRM13 homolog; TrEMBL-Plants: tr|A0A151QXE9|A0A151QXE9_CAJCA tRNA guanosine-2'-O-methyltransferase TRM13 isogeny; Found in the gene: LotjaGi2g1v0071700 2
TRNA(Ile)-lysidine synthase; TAIR: AT3G24560.2 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|B3CLY6|TILS_WOLPP tRNA(Ile)-lysidine synthase; TrEMBL-Plants: tr|K7L0G6|K7L0G6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0217600 4
TRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT5G15810.1 tRNA (guanine(26)-N(2))-dimethyltransferase; Swiss-Prot: sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1; TrEMBL-Plants: tr|V7BZQ1|V7BZQ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0269000 3
TRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT5G15810.1 tRNA (guanine(26)-N(2))-dimethyltransferase; Swiss-Prot: sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1; TrEMBL-Plants: tr|A0A151RGF2|A0A151RGF2_CAJCA Putative N(2),N(2)-dimethylguanosine tRNA methyltransferase 2; Found in the gene: LotjaGi2g1v0269000 3
TRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT5G15810.1 tRNA (guanine(26)-N(2))-dimethyltransferase; Swiss-Prot: sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1; TrEMBL-Plants: tr|V7BZQ1|V7BZQ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0269000 3
Ribonuclease P protein subunit p29; TAIR: AT2G43190.1 ribonuclease P family protein; Swiss-Prot: sp|Q9CR08|RPP29_MOUSE Ribonuclease P protein subunit p29; TrEMBL-Plants: tr|I1LG21|I1LG21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448500 4
Ribonuclease P protein subunit p29; TAIR: AT2G43190.1 ribonuclease P family protein; Swiss-Prot: sp|Q9CR08|RPP29_MOUSE Ribonuclease P protein subunit p29; TrEMBL-Plants: tr|I1LG21|I1LG21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448500 4
Ribonuclease Z; TAIR: AT3G16260.1 tRNAse Z4; Swiss-Prot: sp|Q9BQ52|RNZ2_HUMAN Zinc phosphodiesterase ELAC protein 2; TrEMBL-Plants: tr|I1M5I2|I1M5I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0019500 1
TRNA-dihydrouridine synthase; TAIR: AT5G47970.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine(20/20a) synthase; TrEMBL-Plants: tr|K7LI80|K7LI80_SOYBN tRNA-dihydrouridine synthase; Found in the gene: LotjaGi3g1v0121800 4
TRNA dimethylallyltransferase; TAIR: AT5G20040.1 isopentenyltransferase 9; Swiss-Prot: sp|Q9C5J6|IPT9_ARATH tRNA dimethylallyltransferase 9; TrEMBL-Plants: tr|I1M325|I1M325_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0156900 1
Trna-dihydrouridine(47) synthase [nad](P)(+)]-like protein; TAIR: AT3G49640.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD](P)+]-like; TrEMBL-Plants: tr|A0A151SZ46|A0A151SZ46_CAJCA tRNA-dihydrouridine synthase; Found in the gene: LotjaGi3g1v0179300 4
Ribonuclease P protein subunit p30; TAIR: AT5G59980.2 Polymerase/histidinol phosphatase-like protein; Swiss-Prot: sp|Q3SZ21|RPP30_BOVIN Ribonuclease P protein subunit p30; TrEMBL-Plants: tr|G7IU96|G7IU96_MEDTR Polymerase/histidinol phosphatase-like protein, putative; Found in the gene: LotjaGi3g1v0277400 2
TRNA dimethylallyltransferase; TAIR: AT2G27760.1 tRNAisopentenyltransferase 2; Swiss-Prot: sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2; TrEMBL-Plants: tr|I3SM43|I3SM43_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0480000 1
TRNA dimethylallyltransferase; TAIR: AT2G27760.1 tRNAisopentenyltransferase 2; Swiss-Prot: sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2; TrEMBL-Plants: tr|I3SM43|I3SM43_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0480000 1
TRNA dimethylallyltransferase; TAIR: AT2G27760.1 tRNAisopentenyltransferase 2; Swiss-Prot: sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2; TrEMBL-Plants: tr|I3SM43|I3SM43_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0480000 1
TRNA-specific 2-thiouridylase mnmA; TAIR: AT1G51310.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Swiss-Prot: sp|O51625|MNMA_BORBU tRNA-specific 2-thiouridylase MnmA; TrEMBL-Plants: tr|I1LJW0|I1LJW0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0492700 2
TRNA-specific 2-thiouridylase mnmA; TAIR: AT1G51310.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Swiss-Prot: sp|O51625|MNMA_BORBU tRNA-specific 2-thiouridylase MnmA; TrEMBL-Plants: tr|K7LPK5|K7LPK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0492700 2
TRNA-dihydrouridine synthase; TAIR: AT3G63510.1 FMN-linked oxidoreductases superfamily protein; Swiss-Prot: sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine(20/20a) synthase; TrEMBL-Plants: tr|I3SNH2|I3SNH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550700 4
TRNA-dihydrouridine synthase-like protein; TAIR: AT5G67220.1 FMN-linked oxidoreductases superfamily protein; Swiss-Prot: sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD](P)(+)]-like; TrEMBL-Plants: tr|I1K265|I1K265_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0101600 4
TRNA-dihydrouridine synthase-like protein; TAIR: AT5G67220.1 FMN-linked oxidoreductases superfamily protein; Swiss-Prot: sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD](P)(+)]-like; TrEMBL-Plants: tr|I1K265|I1K265_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0101600 4
TRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT3G56330.1 N2,N2-dimethylguanosine tRNA methyltransferase; Swiss-Prot: sp|Q97ZH0|TRM1_SULSO tRNA (guanine(26)-N(2))-dimethyltransferase; TrEMBL-Plants: tr|I1KB95|I1KB95_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0258900_LC 3
TRNA dimethylallyltransferase; TAIR: AT5G19040.1 isopentenyltransferase 5; Swiss-Prot: sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic; TrEMBL-Plants: tr|Q1W5W4|Q1W5W4_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi4g1v0351300 1
TRNA dimethylallyltransferase; TAIR: AT5G19040.1 isopentenyltransferase 5; Swiss-Prot: sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic; TrEMBL-Plants: tr|Q1W5W4|Q1W5W4_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi4g1v0351300 1
TRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TAIR: AT2G13440.1 glucose-inhibited division family A protein; Swiss-Prot: sp|Q55694|MNMG_SYNY3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TrEMBL-Plants: tr|I1K513|I1K513_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410800 2
TRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TAIR: AT2G13440.1 glucose-inhibited division family A protein; Swiss-Prot: sp|Q55694|MNMG_SYNY3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TrEMBL-Plants: tr|I1K513|I1K513_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410800 2
TRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TAIR: AT2G13440.1 glucose-inhibited division family A protein; Swiss-Prot: sp|Q55694|MNMG_SYNY3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TrEMBL-Plants: tr|I1K513|I1K513_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410800 2
NADPH--cytochrome P450 reductase; TAIR: AT1G75200.1 flavodoxin family protein / radical SAM domain-containing protein; Swiss-Prot: sp|Q8RXN5|TYW1_ARATH S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase; TrEMBL-Plants: tr|A0A0R0GAG6|A0A0R0GAG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0016300 2
TRNA dimethylallyltransferase; TAIR: AT3G63110.1 isopentenyltransferase 3; Swiss-Prot: sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic; TrEMBL-Plants: tr|Q1W5W3|Q1W5W3_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi5g1v0164300 1
TRNA dimethylallyltransferase; TAIR: AT1G68460.1 isopentenyltransferase 1; Swiss-Prot: sp|Q5GHF7|IPT_HUMLU Adenylate isopentenyltransferase; TrEMBL-Plants: tr|Q1W5W5|Q1W5W5_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi5g1v0339400 1
TRNA dimethylallyltransferase; TAIR: AT5G19040.1 isopentenyltransferase 5; Swiss-Prot: sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic; TrEMBL-Plants: tr|Q1W5W2|Q1W5W2_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi6g1v0298900 1
Ribosomal RNA large subunit methyltransferase E; TAIR: AT5G01230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr|I1MEI2|I1MEI2_SOYBN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Found in the gene: LotjaGi6g1v0332700 2
Ribosomal RNA large subunit methyltransferase E; TAIR: AT5G01230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr|A0A0R0GT40|A0A0R0GT40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0332700 2
Ribosomal RNA large subunit methyltransferase E; TAIR: AT5G01230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; TrEMBL-Plants: tr|I1MEI2|I1MEI2_SOYBN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Found in the gene: LotjaGi6g1v0332700 2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Molecular function TRNA methyltransferase activity 1 1.33