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LotjaGi1g1v0311600.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0311600
Transcript ID	LotjaGi1g1v0311600.1
Lotus japonicus genome version	Gifu v1.2
Description	Protein mizu-kussei 1; TAIR: AT2G21990.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp\|O22227\|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr\|A0A0R0JL03\|A0A0R0JL03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0311600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:75589417..75590466) extracted from Lotus japonicus Gifu genome v1.2.

AAACTATTAACCAAATTAACTCGCAACAACACCCAAACTTGAAACCTGGCTTTTCTCCCTCTCTCTTGATGGCACTCATC TTCTCTTCCTCGTTGTTGCTGATCAACACCGACCAATGGGGGAGCCAACATCATCACACACCGCCAAAGCTTCTTCAACA ACACCTCCCCCACCACCACCAGTACCCCTCTCCCCCAAAATCTCCCTCGTCCAACCCTCCCAGAAGAAGAAACACAAACC CAAAATGGTTCGCGTCTTCCGCTCTGTCTTCCGTTCCTTACCCATCATAACCCCCGTATGTAAATTCCCCTCACTTCCCG CCGGCATCCCCGACGGCCACCACCACCACCACCATCTCAGAACCGTCAATGGAAGCAGCGGCGGTACGAGGGTATCGGGC ACGCTATTCGGATACCCTAAGGGACGTGTGAGCCTGTCCGTTCAGGAGACTCCAAAGTGCTTCCCCACGGCAGTGATCGA GCTGTCCATGCATACCAGCGCGCTGCAGAAGGAGATGGCAGCCGGGATGGTGAGGGTGGCGCTCGAGTGTGAGAAGCGGT CAGAGAAGGACAAGACGAGGTTGTTGGAGGAGCCGTTGTGGACAATGTTTTGTAATGGGAAGAAAACCGGGTACGGTATG AGGAGGGAGGCGACGGAGGAGGATCTTAGTGTGATGGAGCTCCTCAAGGCCGTGTCGATGGGTGCCGGCGTTCTTCCGAT GAGGTCTGGCGGCGGTGATGATGTGGATGGTGGAGAGATGACTTATGTGCGAGCACCTTTTGAGCATGTCGTGGGGTCGA AGGATTCAGAGACTCTTTACATGTTAAGTCCAGATGGGAATACTGCTGGGCCTGAGCTTACTATATTTTTTGTCAGGATT TGAGAATTGATCCCATGTTAATGTAGAAAGGTCTAATAAATTTTATGAGGTTCAGATTTCAGAGGTTAGAATGTGACAGA ACTAGGATTGTAAATGATTGTATTTGTATACTAATGCATCAATGATATTATATATAACTTATTTTGTGTTTGTGTTTGAA TCGTTTGCAT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0311600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGGAGCCAACATCATCACACACCGCCAAAGCTTCTTCAACAACACCTCCCCCACCACCACCAGTACCCCTCTCCCC CAAAATCTCCCTCGTCCAACCCTCCCAGAAGAAGAAACACAAACCCAAAATGGTTCGCGTCTTCCGCTCTGTCTTCCGTT CCTTACCCATCATAACCCCCGTATGTAAATTCCCCTCACTTCCCGCCGGCATCCCCGACGGCCACCACCACCACCACCAT CTCAGAACCGTCAATGGAAGCAGCGGCGGTACGAGGGTATCGGGCACGCTATTCGGATACCCTAAGGGACGTGTGAGCCT GTCCGTTCAGGAGACTCCAAAGTGCTTCCCCACGGCAGTGATCGAGCTGTCCATGCATACCAGCGCGCTGCAGAAGGAGA TGGCAGCCGGGATGGTGAGGGTGGCGCTCGAGTGTGAGAAGCGGTCAGAGAAGGACAAGACGAGGTTGTTGGAGGAGCCG TTGTGGACAATGTTTTGTAATGGGAAGAAAACCGGGTACGGTATGAGGAGGGAGGCGACGGAGGAGGATCTTAGTGTGAT GGAGCTCCTCAAGGCCGTGTCGATGGGTGCCGGCGTTCTTCCGATGAGGTCTGGCGGCGGTGATGATGTGGATGGTGGAG AGATGACTTATGTGCGAGCACCTTTTGAGCATGTCGTGGGGTCGAAGGATTCAGAGACTCTTTACATGTTAAGTCCAGAT GGGAATACTGCTGGGCCTGAGCTTACTATATTTTTTGTCAGGATTTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0311600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGEPTSSHTAKASSTTPPPPPPVPLSPKISLVQPSQKKKHKPKMVRVFRSVFRSLPIITPVCKFPSLPAGIPDGHHHHHH LRTVNGSSGGTRVSGTLFGYPKGRVSLSVQETPKCFPTAVIELSMHTSALQKEMAAGMVRVALECEKRSEKDKTRLLEEP LWTMFCNGKKTGYGMRREATEEDLSVMELLKAVSMGAGVLPMRSGGGDDVDGGEMTYVRAPFEHVVGSKDSETLYMLSPD GNTAGPELTIFFVRI

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	42	42	-	–
PANTHER	PTHR31696:SF4 View details on PTHR31696:SF4 Search for proteins/transripts with this domain View external data on PTHR31696:SF4	8	255	248	3.3E-106	–
PANTHER	PTHR31696 View details on PTHR31696 Search for proteins/transripts with this domain View external data on PTHR31696	8	255	248	3.3E-106	IPR006460 Show description in modal box View details on IPR006460 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	14	28	15	-	–
TIGRFAM	TIGR01570 View details on TIGR01570 Search for proteins/transripts with this domain View external data on TIGR01570	93	255	163	1.3E-69	IPR006460 Show description in modal box View details on IPR006460 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04759 View details on PF04759 Search for proteins/transripts with this domain View external data on PF04759	93	254	162	5.8E-64	IPR006460 Show description in modal box View details on IPR006460 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0010274 View details of GO:0010274 AmiGO InterPro QuickGO	Biological process	Hydrotropism	Growth or movement in a sessile organism toward or away from water, as of the roots of a plant.	Subterm of View details of GO:0009606

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0311600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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