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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31696
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 21 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.026s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0006959.1
n.a. Cytochrome P450 [Medicago truncatula] gi|358345537|ref|XP_003636833.1| chr0 2715571 2718020 +
1 domain prediction
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Lj0g3v0015419.1
n.a. non-ltr retroelement reverse transcriptase [Rosa rugosa] gi|399920210|gb|AFP55557.1| chr0 6013721 6014245 -
1 domain prediction
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Lj0g3v0094229.1
n.a. Non-LTR retroelement reverse transcriptase [Theobroma cacao] gi|508778561|gb|EOY25817.1| chr0 39577458 39577904 -
1 domain prediction
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Lj0g3v0209819.1
n.a. Cytochrome P450 [Medicago truncatula] gi|358345537|ref|XP_003636833.1| chr0 105326048 105327306 +
1 domain prediction
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Lj0g3v0276319.1
n.a. OSJNBa0061G20.16 [Oryza sativa Japonica Group] gi|38346596|emb|CAE04660.2| chr0 143350705 143351944 +
1 domain prediction
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Lj0g3v0294579.1
n.a. Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [Theobroma cacao] gi|508717284|gb|EOY09181.1| chr0 153091696 153093550 +
1 domain prediction
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Lj0g3v0355779.1
n.a. non-ltr retroelement reverse transcriptase [Rosa rugosa] gi|399920210|gb|AFP55557.1| chr0 187400834 187401358 +
1 domain prediction
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Lj1g3v1218930.1
n.a. Plant-specific domain TIGR01570 family protein [Medicago truncatula] gi|357464399|ref|XP_003602481.1| chr1 14795355 14796377 +
1 domain prediction
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Lj1g3v1637540.1
n.a. Uncharacterized protein TCM_033904 [Theobroma cacao] gi|508722681|gb|EOY14578.1| chr1 19350219 19351440 -
1 domain prediction
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Lj1g3v2205370.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|358347996|ref|XP_003638036.1| chr1 26354940 26355332 +
1 domain prediction
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Lj2g3v1172250.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|358347996|ref|XP_003638036.1| chr2 18520715 18521731 +
1 domain prediction
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Lj2g3v1182690.1
n.a. Uncharacterized protein TCM_011889 [Theobroma cacao] gi|508710282|gb|EOY02179.1| chr2 18705126 18706935 -
1 domain prediction
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Lj4g3v0014180.1
n.a. NADPH-dependent diflavin oxidoreductase 1 [Theobroma cacao] gi|508727736|gb|EOY19633.1| chr4 170828 172314 +
1 domain prediction
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Lj4g3v1774680.1
n.a. Dr1 [Theobroma cacao] gi|508775001|gb|EOY22257.1| chr4 25182846 25184905 +
1 domain prediction
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Lj6g3v0561840.1
n.a. PREDICTED: protein ALWAYS EARLY 2-like [Vitis vinifera] gi|359487806|ref|XP_003633652.1| chr6 5649665 5650147 +
1 domain prediction
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Lj6g3v1752820.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] gi|124359510|gb|ABD28627.2| chr6 19599784 19600763 -
1 domain prediction
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LotjaGi1g1v0206200.1
n.a. Protein MIZU-KUSSEI 1; TAIR: AT5G23100.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp|O22227|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr|A0A0S3RH17|A0A0S3RH17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0206200 LjG1.1_chr1 44885263 44887180 -
2 domain predictions
1 GO term
LotjaGi1g1v0311600.1
n.a. Protein mizu-kussei 1; TAIR: AT2G21990.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp|O22227|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr|A0A0R0JL03|A0A0R0JL03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0311600 LjG1.1_chr1 75589417 75590466 +
2 domain predictions
1 GO term
LotjaGi1g1v0352500.1
n.a. Protein mizu-kussei 1; TAIR: AT5G42680.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp|O22227|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr|I3SPZ3|I3SPZ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0352500 LjG1.1_chr1 82390632 82391342 -
2 domain predictions
1 GO term
LotjaGi2g1v0283300.1
n.a. Protein MIZU-KUSSEI 1; TAIR: AT3G25640.2 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp|O22227|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr|I1J6S7|I1J6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0283300 LjG1.1_chr2 75571172 75574015 -
2 domain predictions
1 GO term
LotjaGi3g1v0315300.1
n.a. Protein MIZU-KUSSEI 1; TAIR: AT5G06990.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617); Swiss-Prot: sp|O22227|MIZ1_ARATH Protein MIZU-KUSSEI 1; TrEMBL-Plants: tr|I1MIL7|I1MIL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315300 LjG1.1_chr3 66777384 66778913 -
2 domain predictions
1 GO term