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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0312500 |
| Transcript ID | LotjaGi1g1v0312500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT5G64810.1 WRKY DNA-binding protein 51; Swiss-Prot: sp|Q93WU9|WRK51_ARATH Probable WRKY transcription factor 51; TrEMBL-Plants: tr|I3T0G9|I3T0G9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0312500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75673359..75675748) extracted from Lotus japonicus Gifu genome v1.2.
CTTACACATAACCACATAACGACATGAACAAAAGAGAGAAAAATGAGCGATATGCTGAGTAATGTAGTAGGTAAAAAAAG AAAAAGGCATGAAGAAAAATTGAGTGAAAAGTGAATTATGAATGAATTAAAAGTATATGTTTAGGATCCTTCGATGCATC TCCCACGAAGGTGTTTGGAAAGATCGCTCCAAGAAAGCAAGTTAAGAAGAGATATCTATTTCTTGACTTTTGTATTATTA TATATATAGATCCACTTGACTGGTACCACACTCAAGTCATAACTAGCTCTATTCATCATCATCTGCAATATGGACTATTT TCTTGGAAACCCTAATCCTAACCCTGCCGTGAACATGGCTCCTTTCTTTTCCTCTGATTTTGAGATATCTGATTTTCTTG CCCTTGATGATGTTGTTGATCATCATCCAGAGTCTTGGTCGCAAAGCACAGAAACAGAATCATCTGAGAAAGCTGCAGCC TCCAGCGATGCCAGTCATGGATTTGGTGATGCAACCTCTACAAACAATAACATGTGAGTCTCTATCTATTGAGCAACTCG CTTAAAGTTTTGTGTAAAGGAAATTTTTTGGTGAAAAAAAAGTAAATGTTCAGGGTCCGTACAAGATTGTCTGGATCTGT CTTTACTCTTTAGAAATAAAAATGCTAGATATGTGTGTGTGTCAATTGATCTTCAGGATTTTAATTGCTAATACATTAAT CTAATGTATATTCTGGACCAGTACTTTTGACAGAAAATGTGAAAGTGGGGTTAAGCGAAACAAGGTGGAAGATCAAGTGA GCCCAAGGGTCACGTTTAGAACCAGATCGCAGCTTGAGATTATGGATGATGGATACAAATGGAGGAAGTATGGGAAGAAG TCAGTCAAGAACAATCCCAATCTCAGGTAAATAGTGATAAATGAAATGAAACCGTATATAACATATCAACTTCTTTTTTT CTTATGATCAATTCTGACACATAGCTATTAGTTAATACTTGCTACTCATCAGAGAAGAATTTCCTTATAATTCCAACTAA TCTGAGTTGCTATGTGTCATGAATATGATCGATGTATAAAAATCACATGTTAGGATCTATATGAGTCCGTGAATTTAGAG GCAAGTAAACTAAATTATTTAATGTGGAGCTAGCCGCACTTGTCGAAAATCATGTAAACCCTACCACAGTGCAATGATAG GATATATATAGTGGGCCTGATAGATATCAATATTGTTGTGGCGGCTGATATATGCTTCCTTCTAAATAAATAATGCATAT ACATGATCAAGATGTGTGCATTAAGAAGCATGTGGTCTATAATCAACATAATTAACTGAGCATGCTTAGCTTATGTGGGG TTCTTGTGGTGCTTGAATTGATTTAGTTGGTGTTCATTGTCACTCAACACAATTAACTATTCTTTCTTTGTGAACAAGGG TGTGCTTCTGAAGCCAAAAGAGACAGGATACGTTGCTATCAGTTTTGGTATCCATCCACAATACTATAAAATAGTAAACT TTATAAATCTATATGTTGGATCATGTGACATTATCTTAATCACTTAATTAATTAAGAATGTTCAATTTTACATGATTAAT AGATAAGTCCCTATTAGTTTATGCTTTCAAACTATGGAGTTTTTAGTTAATGAATAATTATTAGCTTATGGTTTTCAAAC TATTAATGATGACAGGAACTACTACAAGTGTTCAGGTGAGGGATGCAGTGTAAAGAAAAGGGTGGAAAGAGATAGAGACG ACTCGAGCTATGTGTTGACAACTTATGATGGTATCCACAATCATGAGAGCCCGTGTACTTCCTATTATGGCCAAATGTCC TTAGTGCATTCTAATGTTTGGGCAGTCTAGGCTTCAGCAAACTATATATTCATATTGTTGCCTCTTGATGAGAGTTACGT TTTCCATCAATGTCGCATTCTAATTATTGGGTGGAGTAGTCTCCTACAAACTATCCATATTATATATAGTCTAGTGCATT TAGTGGTTTGTTGGCTTGATGTATATATTGGTCAACGTACTCCTTATCTTTTTTATAATGGGTTGGGGCACTCCTTGTAC TTCCCATTAATCTATTTGGCTTATAAAAAAAAGTCTGAACATCAAGGTTCATGTCAATTAGTTAATGCACAAGTCTTCAT GAACTTTATGATCCATTGAGACAAATTATCTATGCTTGTTTTAAAGAAAAATAAAATCGGGGAGGTGTATTGTGCTTGTT TGAGGAAGGGATTGTCAGATCGATAAAGTTTGGTGTTCACCCGATGGGTGTAGACCACTAGATAAATATGAAAATAAGAG ATAAAGTATATATGTGATGTATGATTTTCACTGTGTGATTGTTTAAAATTGCCACAAAAGTGGGTGTTCA
CDS sequence (LotjaGi1g1v0312500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTATTTTCTTGGAAACCCTAATCCTAACCCTGCCGTGAACATGGCTCCTTTCTTTTCCTCTGATTTTGAGATATC TGATTTTCTTGCCCTTGATGATGTTGTTGATCATCATCCAGAGTCTTGGTCGCAAAGCACAGAAACAGAATCATCTGAGA AAGCTGCAGCCTCCAGCGATGCCAGTCATGGATTTGGTGATGCAACCTCTACAAACAATAACATTACTTTTGACAGAAAA TGTGAAAGTGGGGTTAAGCGAAACAAGGTGGAAGATCAAGTGAGCCCAAGGGTCACGTTTAGAACCAGATCGCAGCTTGA GATTATGGATGATGGATACAAATGGAGGAAGTATGGGAAGAAGTCAGTCAAGAACAATCCCAATCTCAGGAACTACTACA AGTGTTCAGGTGAGGGATGCAGTGTAAAGAAAAGGGTGGAAAGAGATAGAGACGACTCGAGCTATGTGTTGACAACTTAT GATGGTATCCACAATCATGAGAGCCCGTGTACTTCCTATTATGGCCAAATGTCCTTAGTGCATTCTAATGTTTGGGCAGT CTAG
Protein sequence (LotjaGi1g1v0312500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYFLGNPNPNPAVNMAPFFSSDFEISDFLALDDVVDHHPESWSQSTETESSEKAAASSDASHGFGDATSTNNNITFDRK CESGVKRNKVEDQVSPRVTFRTRSQLEIMDDGYKWRKYGKKSVKNNPNLRNYYKCSGEGCSVKKRVERDRDDSSYVLTTY DGIHNHESPCTSYYGQMSLVHSNVWAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 186 | 185 | 1.3E-69 | – | |
| PANTHER | 2 | 186 | 185 | 1.3E-69 | – | |
| MobiDBLite | 40 | 71 | 32 | - | – | |
| MobiDBLite | 45 | 71 | 27 | - | – | |
| Gene3D | 93 | 170 | 78 | 5.7E-29 | ||
| SUPERFAMILY | 101 | 169 | 69 | 7.59E-26 | ||
| ProSiteProfiles | 104 | 169 | 66 | 29.321 | ||
| SMART | 109 | 168 | 60 | 5.2E-31 | ||
| Pfam | 110 | 167 | 58 | 3.1E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0312500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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