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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0312800 |
| Transcript ID | LotjaGi1g1v0312800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G39410.1 WRKY DNA-binding protein 13; Swiss-Prot: sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13; TrEMBL-Plants: tr|A0A151TQX1|A0A151TQX1_CAJCA Putative WRKY transcription factor 13; Found in the gene: LotjaGi1g1v0312800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75713928..75716940) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAAGTTGGTTGAGAGAAGTTACAAGATATACTTGAGCTCCTGGTGTAACCTCCAAGCCAAAGTTCGAGAGAAACCCT CTATTATTTCTGTAAAGTGAACCAACCACTTATCTCTCCCATTCATATCTTCTCCAACTTCAGGTAGAGATAGAGAAATA TCTAGAGATTGGATAGGATCTCTCAAATCTCAATAATCATGTCAACAAGGTCTCAAACTATTGTTAACCACAGCGTGTTT GAAGAGCAAGATCAGATCCATCCACAGATGGGGTTCATTCCTTTCCCTGCAAACATGGCCTTTCCTCCTTATCAATCCTT GAAAACCCTTAATGAAATAGCTCCTTCACTATCATCTGAGGCTGCTTCTACTTCAAGTTTTGCAGAAACCCTGCTCACTA CCTCTGTCCAAAAACCAAGAGAAGATCTCATCACTTCTACTTTGGGAGGAGGAGGAGATAATCTGCTTTCCTTGAACAGA TCAAGAGTTGATTCATGGTGAGACAATATGCACTTTTATTTTTCACATCTCACCGTGCATGTCTAGAAACCCTTTACTAT TGATTCTCAAGCCAAAATTCCATGATCAATTATGAGGAGAAACTTGTATGAGCTTATATAGAATTGATTCTGATGAAAGA GATGTTAATCCAAACATACTTTTGTTTCTTTAGTATATTAAACTTCATAAAAAAAAATATAAAGAGTTGAGTTTTGTTGA ATGTAGGGCATGGCGAGAAGTATCTGATTGCTTGATCATGGGTAAAAGAAATGGAGGAGGTGATCCTCATCATCATCATC ATCTAGGGGTATCTTCCATGAAGATGAAGAAAATGAAGGCAAGAAGAAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACT ATGAGCGATGTGGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTCAAGAACACACAGCACCC AAGGTAATATCCTGATCCTGAATTCAAATTTTCTCTCTTTTTTGTTTGGCTTTAATTATTAGTGAGCATTGATTAATCAA AGTTGAAAAGCATAATAATTTAATTTGTTTAAATTCCACATGTTCTACCTTTTCTTATCTGTCTTCCCCAACTCTTGACC CCTCTCTCATTATTGTTTCATACTTTTATGAGAGTTATATTTGGCTCTCTACTGTTTTTAGGATGTTTTAACACAAGTGC AATCATTAATGATATTGAAGCTAGATTTAACTTTTGTCTTATGGGAAAAAAAAACTATGTGAAAGAGATTTTTGTGAGTG AAAAGATCGATGTAAATTTGCCAATGCTAGCTAAAAGTTAGGACTTTCAAAGCTACTGGGGTCAGAGGGAGGGACTAGGA GGAGCCAAAAAGAAAAATGGAGATCTAAATTAATAATGGATTAAATGATAAATTTCTGAAACAAACTTGATACATCCATG AAAAATCTCTTTGCAGGATTTTCATATCTTGAAGAGTGTTACTGTGGAAACATGTATAAATAAATGTAGAAATTAGAAGG CTGGTTTTATTGTGTCTTTCTGTTGCAAAAATCTTATTATGTCTTCATGAAGCTACAATAAGTAGCTTGTTCCCTTAGCT TGCATACAGGATTGGGTACATTACATATATTATTAGAAATTATGAGGCCTATACTCAACCACAAAAGCTAGCTCAAGAGT TGAGGTTTGCACAACCCTTATAAACACTTGATTGGCCTTATCTCTAGCCAATGTGGGACTTCTAACACACCCCCTCACGT CCAGGATTTGAACAGACTGGAATGTGGGAACAACAACGGGTGGCCCAAATATGGGAGGTCTCCACACAACAAATGGATCT AGGATAGGCTCTGATACCATATTAGAAATTAGGAGGCCTATACTCAACCACAAAAGCTAGCTCAAGAGTTGAGGTTTGCA CAACCCTTATAAACACTTGATTGGCCTTATCTCTAGCCAATGTGGGACTTCTAACATATATGCTTTTATTCTCACTGGGC TACACGTTGATGTAAGATCGGCTGGGGGGCAAAGCTAGAAAATATTATAAGGGCGAAGTGCTTTTTTTTTAACAGCCAAT TGAATTAACAAAAAGTAACACTAGGGGTATTACAACCCATATACAAACAAGGCCAAAGCCAGAAGATAAAAGAGAGGAAG AGAGGATAAAATTTAGTTCACACTCTATTCAATCGACATTTTGTAATATTAGCCCCCCTAAAATCCGCCGCTTATATGTA TGTCGATTGAATTTTGTCAATGAACTAATGTATGTCTGATAATCATTTCCGCTCATATAATTTAACGTTTGGTCCTGTCA AAATTATAAAATTCTGCCTGGGCAATTCATGCTTTTATGAAGTTTTCTTAATATTACAAAATTATAGTGTGTGTATATAT ATATAGGTGGTTTCTATGATACCCACAATGTATCATACATGAAGGATGTGATTGGTCCACAACAAAAATAATTTATATTT TCATTTTTTTCTTTTTAAAGACGGAGGATGTGATTGGTCCACAACCTTTTCGTGTATCATACCCACACAAGTGTTGTGGT ATCGTAGCAAGCACCATATATATATATATATATTTCTTTGATTTATTGATGATGTTTGTTTTGGGCACTGTGTGCAGAAG CTACTACCGTTGCACTAAAGATAATTGCCGAGTAAAGAAACGCGTGGAGCGCTTGGCTGAGGATCCAAGAATGGTGATAA CCACATATGAAGGGAGACATGCGCACTCTCCATCAAATGAACTTGAAGACTCGCAAACTCCATCTCAACTCGCTAACTTC TTGTGGTAGTATATACCAATTTAACTAATATTCAAATATGTATATTTCTATCTTAGAGGTTGTGTTATGTAGACATGAAA AACAGAATACGGAGAGAGGAATGAGTAAAATTATATTGACAGTATAGTATCTAGGAATCGATGCATGCTCTAGTTCATTG TCTATTTTCTCTCTTCTATTCACTGCAGCTCTCAAATTCACCTATTTCAAAAG
CDS sequence (LotjaGi1g1v0312800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACAAGGTCTCAAACTATTGTTAACCACAGCGTGTTTGAAGAGCAAGATCAGATCCATCCACAGATGGGGTTCAT TCCTTTCCCTGCAAACATGGCCTTTCCTCCTTATCAATCCTTGAAAACCCTTAATGAAATAGCTCCTTCACTATCATCTG AGGCTGCTTCTACTTCAAGTTTTGCAGAAACCCTGCTCACTACCTCTGTCCAAAAACCAAGAGAAGATCTCATCACTTCT ACTTTGGGAGGAGGAGGAGATAATCTGCTTTCCTTGAACAGATCAAGAGTTGATTCATGGGCATGGCGAGAAGTATCTGA TTGCTTGATCATGGGTAAAAGAAATGGAGGAGGTGATCCTCATCATCATCATCATCTAGGGGTATCTTCCATGAAGATGA AGAAAATGAAGGCAAGAAGAAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTGTTGGATGAT GGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTCAAGAACACACAGCACCCAAGAAGCTACTACCGTTGCACTAAAGA TAATTGCCGAGTAAAGAAACGCGTGGAGCGCTTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGGAGACATG CGCACTCTCCATCAAATGAACTTGAAGACTCGCAAACTCCATCTCAACTCGCTAACTTCTTGTGGTAG
Protein sequence (LotjaGi1g1v0312800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTRSQTIVNHSVFEEQDQIHPQMGFIPFPANMAFPPYQSLKTLNEIAPSLSSEAASTSSFAETLLTTSVQKPREDLITS TLGGGGDNLLSLNRSRVDSWAWREVSDCLIMGKRNGGGDPHHHHHLGVSSMKMKKMKARRKVREPRFCFKTMSDVDVLDD GYKWRKYGQKVVKNTQHPRSYYRCTKDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEDSQTPSQLANFLW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 29 | 102 | 74 | 0.00102429 | – | |
| PANTHER | 57 | 225 | 169 | 1.5E-71 | – | |
| PANTHER | 57 | 225 | 169 | 1.5E-71 | – | |
| MobiDBLite | 114 | 134 | 21 | - | – | |
| Gene3D | 143 | 218 | 76 | 9.9E-32 | ||
| SUPERFAMILY | 150 | 217 | 68 | 1.26E-28 | ||
| ProSiteProfiles | 153 | 218 | 66 | 29.471 | ||
| SMART | 158 | 217 | 60 | 1.9E-36 | ||
| Pfam | 159 | 215 | 57 | 4.4E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0312800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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