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LotjaGi1g1v0313400.2

Overview

Field Value
Gene ID LotjaGi1g1v0313400
Transcript ID LotjaGi1g1v0313400.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Transporter-related family protein; TAIR: AT4G09810.1 Nucleotide-sugar transporter family protein; Swiss-Prot: sp|Q9SRE4|UGAL2_ARATH UDP-galactose transporter 2; TrEMBL-Plants: tr|G7JAC6|G7JAC6_MEDTR Nucleotide/sugar transporter family protein; Found in the gene: LotjaGi1g1v0313400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:75785050..75790479) extracted from Lotus japonicus Gifu genome v1.2.

CTAGTTCAATATGTCGTCAGCAAGCAAGGGTGATAGGAAGGCTACCCTTGATGCATCGTCATGGTTGTTCAACGTGGTCA CGTCTGTGGGAATAATCCTTGTCAATAAAGCCCTGATGGCTAAATATGGTTTTAGTTTCGGTATGACTTCTTCATGACTT TTCCCTTTTTCTTTCCCTCCATTAAATGTTTGTTTGGTCATACCTCTAATTTAAAAGATATCATGCTTCTCATCTATGTG TTGTTTGGATAAACTACCAATTTGGTGCATTCCTTTTTGGCTAGTAAGAAACATGTATCATGTATGTATGTTTTTTGTGT TAATGGTGGAGAAAGATTTTTGCTTTAATAGACTTGATATATTCTGTGTATTTTTCACTTTGATATTACCAACTAGCATC CTTTTGGCTTTTATTGATGGTCTGCAGCATAAACTTTTCCTTGGATTTAAAAATGCATGCATTATATCTTGGTAGTAGTT GAATAGCTGACAAGTTGGCATTGGTGATGCTGGTGTGAATACTATGTAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGTAAATCTGAGAAGTTATGCTTTCATATCATATGCTGATGTTTCTCAGCCCGCACAAA CTTTTTGTATTTGTGAAGTGAAATCCAATGTAAAAATGTGAGCAAAATCCTCAATTTTTTCAATCCAAAAAACTGTTGTG ATGTTACAGATGGACATTCGAAGTTTTCTCTAGGAAAGCCTTTTGAAACAACTCTTTCATTTGCCTGATTTTTAGTTTTG ATATTGATTACAGAACTACTGTTCTTAATATATCCCAAAGCTAATCTTCCGATGTGTCAAAAAAAGATATATATCCCAAA GCTACAACAGCTTTAAAGCACTGAGAATAGCATTGGATGATCAATTAAAATCTATTAAATAACTAGTCAACCAAAGAATA ATGTAGTTTATGGTTTCTTCTGATGTTACTTGTAAGGCTACAGATTGCTTCTAAACTTCTGCAATAGTCTTGAATCCTGA CATTCTATATCATATCATGCTATTATGCAGCTACAACTTTAACTGGTATGCATTTTGCCACAACAACCTTGTTGACGCTG GTTCTTAAGTCACTGGGATATATCACGCCCTCTCATCTTCCAATATCTGATATCATCAAATTTGTATTATTTGCCAATTT CTCCATTGTTGGAATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTTTATCAGGTAACTTATGGGCTTTTTGTTATGA ACTTTTTAACTCTCCTTTGACATAGATTAGTATTTATAATAATTTCTTCCTCTCATTATTATCAGATTGCTAAGCTTAGT ATGATTCCAGTATCTTGTTTCCTGGAAGTTGTCTTGGACAATGTGCGATATTCAAGGGACACAAAGCTTAGTATTTTATT GGTTTTGCTTGGTGTTGCCATCTGTACAGTCACTGATGTCAGCGTCAATACAAAGGGTTTCGTAGCTGCTATAATAGCAG TTTGGAGCACAGCACTGCAGCAATATGTAAGTAGCACTACATTAAATATTGAACCTTGGTTGGGAGATACAAACTGATCA ATTTGAATTCCTTGCCATCAAGTAGTTCTAGATTGTTAAACATTCACTTTCAGGTTCATGATGCTCGTTGGTAACTTTCA TGTTTGTAAGAATTAATCTTTTTATGTATCTATAAATGACAAATTGGAAGCCTGCAAAAAAATTTCTTTGTTTTTTTGCA TTTTTATAATGAGCAGTATTCTCAGATGTATCATCTGGAGCAGAGTACAATAAGTTGTTTAATATTTCTAGCTCTACCTG TTTTATTTGGGTTTGACAATCTAGGTTTTGTTTGTGCAGTATGTGCATTTTCTTCAGAGGAAGTATTCTATCGGGTCATT TAACTTGTTGGGCCACACTGCTCCAGCACAGGCAGCTAGTTTACTGCTAGTAGGCCCCTTTCTGGACTATTGGTTAACAA ACAAACGAGTTGATGCCTATGGCTATGGTTTGACATCCACTGTAAGTTCTCTTTCTCTTTCTAGTTTTCTTTTCTAATAA ATGTTGAGTTATGAGAAGGGGGTAAGCAGAAACTTTTGAAATTTATTTAGTTCAGGTTTAGGCTGCTTTTTTCTTTTAGC TGTTAAGTTAATATTGAAATATTCGACCAAAAACAAAGTTAATATTGAAATAAGTTGTAAGACTAGGGACTAATCCTGCA TCAGAGAATTGTGTGTGCCACTTGCATGGTGAATTTCATATTCATTATAAAAGATCGCATTCTTTGTATTGCTTATTATT GAACTTGGTGCTAAGTTATACTGCCTAACTTCAGTCTCAGGTTCCTGAATGATATTAAGAAAATAACTTCTTGGCTTACT ATGTCTAAGTCTAAGTTTTAACTTCGGTCACATTGCTTCACAACATACAAACTTTTCAATTTATAAGTCCTGTAAGCATT GCATGAAGCCAGAAGTTCTGGAAGCTTCCTTCCGTTAAGAACATTTCAAACCGTTGACTAAAAAGGACCAGTAAATAGCA TTTGAAGTTCAAGGTGTTATATCCAATTCCAAACATGTTCATTCTTTTTATTAGGGTGAAATCACCTTTTCTTAACTAAT GTATTCTTCTTTACCCTTCCCTTTTTTTAACTCGCTGTTGCATCTTACTAGTTAACTTTAGTTTTCCTGTTATACCATCT GTATGTAAAAAAATCATGCAGATTTGTGATTCTGAAAAGTGGCACATAATTATTTCAAATCCACATAGATGCTGAATGTC AAGTTCTTTGTATTCTTAATATGACCAATCTAGTCTTAAAAAAATTACATTTTATGAGCAATTTTTCTATTAAGATCTCT CAGATCATAACCCACAATCTGTAGGGGCAATTATCTTTGTGAATCATTACTTTCTTTTAAAATTTCTTGTATATTGAAGA TTTTAATTAGATTGTATTATCTTGTTTTTATCTTGTGATCTCACTTATGAGTTCCTGGAGATTCTTATTTTATCTACCTT GTATTATGCTTCTATAATGATTTTAGCTTAGGAAGTTCTTTAGCAGTCCTATCCCTAGTGTACATGTAGAAAACAAGAAA GAGTCACTGTTGTTAAATTTGCTTACCTTTATACTGGCAGCATGCCAATAGCTCTTCTTTTTATTCATAAAAAACGATGT ATGCTTGACAATTTGTACTTAAGTAGTTGCTCACAATTCACACTGTATTTGTGAGGATGCCTAGCCTTGGTCTACTTAGA ACCAAATATTTTCTGGTTGTCAATTTGTTTTCTGGAAGATTTGGATTATGACCCATTTTCATTAGGAATATACTACTTTT TGTGAGAAACACAGTATTATCTATAAGGACTTTATGTTGTCCAATGGTGGCACCACAGCAGAATTTCAACGACCTGCCAT TTGAAGACCATTCATGACAGGTTTTGAATGGCAGACCATGGAAGCTGCTTTTGTGGAAATGCCAGAAGAATAAGCCAAAA AAATAAGAGATGGACAATATACACCCATGTCGTCTCAACATCCATGGAATGAGTTACACAAAAATCAAACACCTATTCCT CAGCCATCAAACCCTAAGTAGTCCATCATACTCACTTCTATTTTCAATAACCTCCCGCAGTCCCGCCTGACCTCTTCTAT CTTCCCTTTCCAATGAACGGATTTTTTCTTACTCCTCTGTCTCTATTGTTCTATGTAATTCTATTTCATTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTATGTATCCCTTCACTCTACTTATTTCTTTCACTCTTATCCTCTTCTGTTTCTCATTTCTG TTATTTCTTTTCTGTGTCTGTTGTTATCTTTCTTGCTTGCTCCTTGTTACTCTATTCTCCTCTTGATCCTTTTTAAGTTT TTTTCCCTCTGTTTTCTGCCCTCTTTTGCTCTTCATATTTTTTCCACTTTCCCATTCTTGCCTATTCTTATTTCTTCTCT ATTGCTTTGTGTTCTTGGTTCAAGAAGCGTATTTAGGCTTGATTGCACTTTTAGTCTCCTTAGTTTGGATTCTATTTGAG TTTTGTTCCCCTAGTTTCTTTTTTTAAGCTAATCAAGCCCATTTACTTTCAAATTAAACAAATTTTGTCCTTATCTCAAT CTTCATATATCCAAAATCCTAATTTTTTTGTTTCAAAAAATTCCTAAATCTTTTCTATTCAAATATTTTGGATTTTATGT TGGATTGGGGATTTAATTTTAGAAGATTTTGTAGGATGTGAGATTAAGATTTAAAGAAGTGGAAGTTTTTGGTGAAATTT AATATTTTGGTTGGTGAGTTTTGAGTGGAAGGTTTAAATGATTTAATCAGTTGAATTTGTGAAAATTATGCTTAGAAAAT GAGAATTTGAAAGTAAAGTGGTCGAGGGATGTAAATGTAACAATTAAAAAAAATTAAAGGGCTAAATTTGCTCAAAAAGT GATTTATATTAGATAAATGAAAAATGCAATTAAATTTTATAATGTTTAGTTTTAATGTTTTTTTCTACATTTTATAGTTG TTTGGTATACCTTCTGAACACATAATTTATTAGTTGTAACTTGTAATGCTTAAGCCATAGACTGCAACCCCATCTGCCAT ATTGGTATGGCTGATTTTTTTCTTTTGCCGCTTTGAACAGCTATCCCCCATTTATAACATTCAAGGGACCAACTATTTCC AGTGCATATGCCATATGCTTTATTTGTCTCTCTCCTCTCTGAAAATGACACTGGCATGGTCCTAAGAAAAAGGAGAGGAT CTAAATGTGCATGCTCTTTTTGTTAACTTTCTAATACTGTACTGTGCATCTTCACTTAAAAAAACTGAGTACTGTGACAA CTAGTGAACTGTTATTAAACTGAGCTACTCTTTCTGTCTGCAGTTGTTCATCATTCTGTCCTGCACCATTGCAGTAGGGA CAAACCTCAGCCAGTTCATCTGCATTGGTAGGTTTACAGCGGTAACATTCCAAGTCCTTGGCCACATGAAAACCATTCTG GTGCTGATCCTAGGGTTCATTTTCTTTGGAAAAGAGGGTCTCAATCTACAAGTTGTTATAGGCATGATGATTGCAATATT GGGAATGATTTGGTATGGTAATGCATCTTCAAAGCCAGGGGGAAAAGAGCGTCGTAGCTTTTCCATTCCTTCCTCCAAAA CACAAGAATATGGTGCACTACCTGTGTCCTCTGAACCAGATGAGAAGGTATAGAAAATATAACTTCACTAGAAGAGTGGT GAAACTTTTGGTGAAGTCCATAGTAAAATCATGTGCCCTTTAGGCTAGCTGACTTATTTTCTTTATACCTAGAGGGAATT CCCAGTTATTTATATAGATCATAGTCATATATATTTGCTTTTGTGTAATGAATTATTTGGGAGAGAGTAG 

CDS sequence (LotjaGi1g1v0313400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGTCAGCAAGCAAGGGTGATAGGAAGGCTACCCTTGATGCATCGTCATGGTTGTTCAACGTGGTCACGTCTGTGGG AATAATCCTTGTCAATAAAGCCCTGATGGCTAAATATGGTTTTAGTTTCGCTACAACTTTAACTGGTATGCATTTTGCCA CAACAACCTTGTTGACGCTGGTTCTTAAGTCACTGGGATATATCACGCCCTCTCATCTTCCAATATCTGATATCATCAAA TTTGTATTATTTGCCAATTTCTCCATTGTTGGAATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTTTATCAGATTGC TAAGCTTAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTGTCTTGGACAATGTGCGATATTCAAGGGACACAAAGCTTA GTATTTTATTGGTTTTGCTTGGTGTTGCCATCTGTACAGTCACTGATGTCAGCGTCAATACAAAGGGTTTCGTAGCTGCT ATAATAGCAGTTTGGAGCACAGTTTTGTTTGTGCAGTATGTGCATTTTCTTCAGAGGAAGTATTCTATCGGGTCATTTAA CTTGTTGGGCCACACTGCTCCAGCACAGGCAGCTAGTTTACTGCTAGTAGGCCCCTTTCTGGACTATTGGTTAACAAACA AACGAGTTGATGCCTATGGCTATGGTTTGACATCCACTTTGTTCATCATTCTGTCCTGCACCATTGCAGTAGGGACAAAC CTCAGCCAGTTCATCTGCATTGGTAGGTTTACAGCGGTAACATTCCAAGTCCTTGGCCACATGAAAACCATTCTGGTGCT GATCCTAGGGTTCATTTTCTTTGGAAAAGAGGGTCTCAATCTACAAGTTGTTATAGGCATGATGATTGCAATATTGGGAA TGATTTGGTATGGTAATGCATCTTCAAAGCCAGGGGGAAAAGAGCGTCGTAGCTTTTCCATTCCTTCCTCCAAAACACAA GAAGAGTAG 

Protein sequence (LotjaGi1g1v0313400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSASKGDRKATLDASSWLFNVVTSVGIILVNKALMAKYGFSFATTLTGMHFATTTLLTLVLKSLGYITPSHLPISDIIK FVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDNVRYSRDTKLSILLVLLGVAICTVTDVSVNTKGFVAA IIAVWSTVLFVQYVHFLQRKYSIGSFNLLGHTAPAQAASLLLVGPFLDYWLTNKRVDAYGYGLTSTLFIILSCTIAVGTN LSQFICIGRFTAVTFQVLGHMKTILVLILGFIFFGKEGLNLQVVIGMMIAILGMIWYGNASSKPGGKERRSFSIPSSKTQ EE 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 11 11 -
PANTHER 6 321 316 7.3E-200
PANTHER 6 321 316 7.3E-200
Phobius 12 31 20 -
TMHMM 15 32 18 -
Pfam 24 297 274 8.8E-15
Phobius 32 42 11 -
TMHMM 39 61 23 -
Phobius 43 66 24 -
Phobius 67 77 11 -
Phobius 78 96 19 -
TMHMM 81 103 23 -
Phobius 97 101 5 -
Phobius 102 121 20 -
Phobius 122 132 11 -
Phobius 133 151 19 -
TMHMM 133 152 20 -
Phobius 152 156 5 -
TMHMM 157 174 18 -
Phobius 157 176 20 -
Phobius 177 187 11 -
TMHMM 181 203 23 -
Phobius 188 207 20 -
Phobius 208 218 11 -
TMHMM 218 240 23 -
Phobius 219 238 20 -
Phobius 239 249 11 -
Phobius 250 273 24 -
TMHMM 252 274 23 -
Phobius 274 278 5 -
TMHMM 278 300 23 -
Phobius 279 300 22 -
Phobius 301 322 22 -
MobiDBLite 302 322 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0313400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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