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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0313400 |
| Transcript ID | LotjaGi1g1v0313400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter-related family protein; TAIR: AT4G09810.3 Nucleotide-sugar transporter family protein; Swiss-Prot: sp|Q9SRE4|UGAL2_ARATH UDP-galactose transporter 2; TrEMBL-Plants: tr|A0A151TQQ5|A0A151TQQ5_CAJCA Putative membrane protein family; Found in the gene: LotjaGi1g1v0313400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75788309..75790469) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGTCAGCAAGCAAGGGTGATAGGAAGGCTACCCTTGATGCATCGTCATGGTTGTTCAACGTGGTCACGTCTGTGGG AATAATCCTTGTCAATAAAGCCCTGATGGCTAAATATGGTTTTAGTTTCGGTATGACTTCTTCATGACTTTTCCCTTTTT CTTTCCCTCCATTAAATGTTTGTTTGGTCATACCTCTAATTTAAAAGATATCATGCTTCTCATCTATGTGTTGTTTGGAT AAACTACCAATTTGGTGCATTCCTTTTTGGCTAGTAAGAAACATGTATCATGTATGTATGTTTTTTGTGTTAATGGTGGA GAAAGATTTTTGCTTTAATAGACTTGATATATTCTGTGTATTTTTCACTTTGATATTACCAACTAGCATCCTTTTGGCTT TTATTGATGGTCTGCAGCATAAACTTTTCCTTGGATTTAAAAATGCATGCATTATATCTTGGTAGTAGTTGAATAGCTGA CAAGTTGGCATTGGTGATGCTGGTGTGAATACTATGTAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGTAAATCTGAGAAGTTATGCTTTCATATCATATGCTGATGTTTCTCAGCCCGCACAAACTTTTTGTAT TTGTGAAGTGAAATCCAATGTAAAAATGTGAGCAAAATCCTCAATTTTTTCAATCCAAAAAACTGTTGTGATGTTACAGA TGGACATTCGAAGTTTTCTCTAGGAAAGCCTTTTGAAACAACTCTTTCATTTGCCTGATTTTTAGTTTTGATATTGATTA CAGAACTACTGTTCTTAATATATCCCAAAGCTAATCTTCCGATGTGTCAAAAAAAGATATATATCCCAAAGCTACAACAG CTTTAAAGCACTGAGAATAGCATTGGATGATCAATTAAAATCTATTAAATAACTAGTCAACCAAAGAATAATGTAGTTTA TGGTTTCTTCTGATGTTACTTGTAAGGCTACAGATTGCTTCTAAACTTCTGCAATAGTCTTGAATCCTGACATTCTATAT CATATCATGCTATTATGCAGCTACAACTTTAACTGGTATGCATTTTGCCACAACAACCTTGTTGACGCTGGTTCTTAAGT CACTGGGATATATCACGCCCTCTCATCTTCCAATATCTGATATCATCAAATTTGTATTATTTGCCAATTTCTCCATTGTT GGAATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTTTATCAGGTAACTTATGGGCTTTTTGTTATGAACTTTTTAAC TCTCCTTTGACATAGATTAGTATTTATAATAATTTCTTCCTCTCATTATTATCAGATTGCTAAGCTTAGTATGATTCCAG TATCTTGTTTCCTGGAAGTTGTCTTGGACAATGTGCGATATTCAAGGGACACAAAGCTTAGTATTTTATTGGTTTTGCTT GGTGTTGCCATCTGTACAGTCACTGATGTCAGCGTCAATACAAAGGGTTTCGTAGCTGCTATAATAGCAGTTTGGAGCAC AGCACTGCAGCAATATGTAAGTAGCACTACATTAAATATTGAACCTTGGTTGGGAGATACAAACTGATCAATTTGAATTC CTTGCCATCAAGTAGTTCTAGATTGTTAAACATTCACTTTCAGGTTCATGATGCTCGTTGGTAACTTTCATGTTTGTAAG AATTAATCTTTTTATGTATCTATAAATGACAAATTGGAAGCCTGCAAAAAAATTTCTTTGTTTTTTTGCATTTTTATAAT GAGCAGTATTCTCAGATGTATCATCTGGAGCAGAGTACAATAAGTTGTTTAATATTTCTAGCTCTACCTGTTTTATTTGG GTTTGACAATCTAGGTTTTGTTTGTGCAGTATGTGCATTTTCTTCAGAGGAAGTATTCTATCGGGTCATTTAACTTGTTG GGCCACACTGCTCCAGCACAGGCAGCTAGTTTACTGCTAGTAGGCCCCTTTCTGGACTATTGGTTAACAAACAAACGAGT TGATGCCTATGGCTATGGTTTGACATCCACTGTAAGTTCTCTTTCTCTTTCTAGTTTTCTTTTCTAATAAATGTTGAGTT ATGAGAAGGGGGTAAGCAGAAACTTTTGAAATTTATTTAGTTCAGGTTTAGGCTGCTTTTTTCTTTTAGCTGTTAAGTTA A
CDS sequence (LotjaGi1g1v0313400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCAGCAAGCAAGGGTGATAGGAAGGCTACCCTTGATGCATCGTCATGGTTGTTCAACGTGGTCACGTCTGTGGG AATAATCCTTGTCAATAAAGCCCTGATGGCTAAATATGGTTTTAGTTTCGCTACAACTTTAACTGGTATGCATTTTGCCA CAACAACCTTGTTGACGCTGGTTCTTAAGTCACTGGGATATATCACGCCCTCTCATCTTCCAATATCTGATATCATCAAA TTTGTATTATTTGCCAATTTCTCCATTGTTGGAATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTTTATCAGATTGC TAAGCTTAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTGTCTTGGACAATGTGCGATATTCAAGGGACACAAAGCTTA GTATTTTATTGGTTTTGCTTGGTGTTGCCATCTGTACAGTCACTGATGTCAGCGTCAATACAAAGGGTTTCGTAGCTGCT ATAATAGCAGTTTGGAGCACAGTTTTGTTTGTGCAGTATGTGCATTTTCTTCAGAGGAAGTATTCTATCGGGTCATTTAA CTTGTTGGGCCACACTGCTCCAGCACAGGCAGCTAGTTTACTGCTAGTAGGCCCCTTTCTGGACTATTGGTTAACAAACA AACGAGTTGATGCCTATGGCTATGGTTTGACATCCACTGGGGTAAGCAGAAACTTTTGA
Protein sequence (LotjaGi1g1v0313400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSASKGDRKATLDASSWLFNVVTSVGIILVNKALMAKYGFSFATTLTGMHFATTTLLTLVLKSLGYITPSHLPISDIIK FVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDNVRYSRDTKLSILLVLLGVAICTVTDVSVNTKGFVAA IIAVWSTVLFVQYVHFLQRKYSIGSFNLLGHTAPAQAASLLLVGPFLDYWLTNKRVDAYGYGLTSTGVSRNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 6 | 226 | 221 | 1.3E-137 | – | |
| PANTHER | 6 | 226 | 221 | 1.3E-137 | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 15 | 32 | 18 | - | – | |
| Pfam | 24 | 167 | 144 | 4.4E-9 | ||
| Phobius | 32 | 42 | 11 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 43 | 66 | 24 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| Phobius | 78 | 96 | 19 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 97 | 101 | 5 | - | – | |
| Phobius | 102 | 121 | 20 | - | – | |
| Phobius | 122 | 132 | 11 | - | – | |
| TMHMM | 133 | 152 | 20 | - | – | |
| Phobius | 133 | 151 | 19 | - | – | |
| Phobius | 152 | 156 | 5 | - | – | |
| TMHMM | 156 | 177 | 22 | - | – | |
| Phobius | 157 | 176 | 20 | - | – | |
| Phobius | 177 | 187 | 11 | - | – | |
| Phobius | 188 | 207 | 20 | - | – | |
| Phobius | 208 | 232 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0313400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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