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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0315700 |
| Transcript ID | LotjaGi1g1v0315700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT3G18800.1 transmembrane protein; Swiss-Prot: sp|Q7U5K1|Y1702_SYNPX Maf-like protein SYNW1702; TrEMBL-Plants: tr|W9RX90|W9RX90_9ROSA Uncharacterized protein; Found in the gene: LotjaGi1g1v0315700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76191960..76193136) extracted from Lotus japonicus Gifu genome v1.2.
CCCTGACTCTTCACCTATAATTTTCTTTAGCTCAACGATGTGAGCTATCCATCCCCCAATGTCATACATAAATCACATTA CAACCAATTTTAGAAAGTGAAATTCAAACACACCACTCTAGCTAGATGAGGGGGACAAAACTAAACTAGACCTGCAGAAC AGTAACTACAAAGCTTTAAAAACATTTAGGATTTGGTAGCAATAACTTGACCCAACCCGACAACACCCAACGTTCTTCTT CGTACAACACAACACAAACCAACACAACTTTTCTTCCTGTTTTCTGTGTCCATCAATGGCAGACTACGACACCCACAACC ACCAACAACCCACCGTCTCAAAGGAAACAGCCTTCCAAGCCTTGAACACCATAATCCAGCTCCACTTCGAGAAAACCCTC GAGAAGAAACGCGCAATCGACCTCCAGAAGAAGGAACTTCACAAGCTCTTCCAAACCTTCTTCATCTTCCTCACCCTCGT CCTCCTCTTCCAATCCCAGTCGCAGCGCCTCCAGTGCCGCCACTGCTGGATCCCCATCACGCTCCTCTCGCTTGCCCACC TCATTTTCTATGTCTCCGTCGCACAGACGCTTCGCTGCATCAATGGGTTCAAGTACCAGCGCCGCTGCCACAAGCTGACT CTTGGTTTGGCCACTGAGAAGCTCCGGGAGATGAGGATGCGCCTTAGCGCCGCCGCCGCCGGTGATGTTCATGAGTATGA TGATGAGGAGTTTGAGATTCATTACCAGGAACCGCCTGAGAGCTATTTTGGTAAGTTTAAGAGGAATTGGGCTCTGCATT TTGGCTTCTTGATCTTGATCTATGGGTTTATGATCTCTTCCTCTGTTGTTCTTCTCTGTTTTTGAGAGTGAGATTTTCCC TAATCTGGTGTATTTATTTTGAATTAAGTGTTAGATAATGTATGATTGAGAATTGAGATAGAGTAGAGAGGTATCACAAT TTGTAAAATTGTATGAATTTATTTGCAGTTTAGTGTCAAATTCAGAAATCAAATCCATTCTCACTAGTACTTTTGTGTTT TGTCTTTCTACTCTTTGAAAAAATGCATGAGTGATTAGAACTAAGAAGATTTTGGGTGGAATCTGTGAATATAGCTTGTT GCCATGGATAAGCAGCTTACTGCATTGTACTGATAAATGAAATGATGGAGAGTACTA
CDS sequence (LotjaGi1g1v0315700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACTACGACACCCACAACCACCAACAACCCACCGTCTCAAAGGAAACAGCCTTCCAAGCCTTGAACACCATAAT CCAGCTCCACTTCGAGAAAACCCTCGAGAAGAAACGCGCAATCGACCTCCAGAAGAAGGAACTTCACAAGCTCTTCCAAA CCTTCTTCATCTTCCTCACCCTCGTCCTCCTCTTCCAATCCCAGTCGCAGCGCCTCCAGTGCCGCCACTGCTGGATCCCC ATCACGCTCCTCTCGCTTGCCCACCTCATTTTCTATGTCTCCGTCGCACAGACGCTTCGCTGCATCAATGGGTTCAAGTA CCAGCGCCGCTGCCACAAGCTGACTCTTGGTTTGGCCACTGAGAAGCTCCGGGAGATGAGGATGCGCCTTAGCGCCGCCG CCGCCGGTGATGTTCATGAGTATGATGATGAGGAGTTTGAGATTCATTACCAGGAACCGCCTGAGAGCTATTTTGGTAAG TTTAAGAGGAATTGGGCTCTGCATTTTGGCTTCTTGATCTTGATCTATGGGTTTATGATCTCTTCCTCTGTTGTTCTTCT CTGTTTTTGA
Protein sequence (LotjaGi1g1v0315700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADYDTHNHQQPTVSKETAFQALNTIIQLHFEKTLEKKRAIDLQKKELHKLFQTFFIFLTLVLLFQSQSQRLQCRHCWIP ITLLSLAHLIFYVSVAQTLRCINGFKYQRRCHKLTLGLATEKLREMRMRLSAAAAGDVHEYDDEEFEIHYQEPPESYFGK FKRNWALHFGFLILIYGFMISSSVVLLCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 47 | 47 | - | – | |
| PANTHER | 5 | 189 | 185 | 1.0E-103 | – | |
| Phobius | 48 | 66 | 19 | - | – | |
| TMHMM | 48 | 67 | 20 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 78 | 99 | 22 | - | – | |
| Phobius | 100 | 164 | 65 | - | – | |
| Phobius | 165 | 187 | 23 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 188 | 189 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0315700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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