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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0315800 |
| Transcript ID | LotjaGi1g1v0315800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-2; TAIR: AT1G76880.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2; TrEMBL-Plants: tr|V7AVU4|V7AVU4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0315800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76198155..76201047) extracted from Lotus japonicus Gifu genome v1.2.
TAACGTGATTTCAGAGTTTGGAGAGATTAGTTTCATAATTATTGGTGATGAGAATACCTTAGGAAATTAAAAACTATACA GAATATATAATTTATGTTCTACATTTATAAGTGCGGTATTCATCTGATTTGGGCCATATAAGTAAGTGCCGTAAAATTGG GTGGCGAGAAAACTAGTAGTATTATTATTGAATTTCACCCCCTCCTCTATGTAACTTTGTTTAACTTGTGGTTTATAACA ATGGTACGGTAGTATTAGTAGTAGGTAGAGGTAGAAACAGAACTAGAATAGAACCAAAGACAGAACACAAGAGAGAGTAG GAGCACCTTACAAATCAAAACACCAACAACACAAACACAAACACAAACACAAACACAAACACACTATACCCGTTATCAGT TCTCACCAAAGAAATTAACCTTTCCCATTTTCAAATTTCACCGACCTTGTTTCTCAGCTGTAATTCAGTCAAACTCACTC ATGCTGGGAATCTCATCTTTACCGGAAACTCCCATCCAGACCCCGCCGCCGCACCTCGTGCAGGAGGTTGCTGCTGCTTC CGCCGTCGCCGCCGCCACTGATGGAGGACCACTCTCCGATGGGTTCAAAACGGAGCACGGCGAGGATGGAGACCGCAGTT CCGGCGCCAACCGGTGGCCTCGGGAGGAGACAATGGCTCTGCTCAGGATAAGGTCTGAAATGGACGTTGCCTTCAGAGAT ACAAGCCCTAAAGCCCCTCTTTGGGAACAAGTCTCAAGGTCAGTTTTTTCTTCTTTTTCTCCATACCCTTTTAGCTAAAC TCCCCTTAAATGCTGCAAATTCTCACCCCCACCTAACTTTTCCATTTGGGTCATTCATTCCTATAGCTTTCATGATGCAT AGTTACATACCCTTCGTTACCTGTGTTGTTGTTAGTTGTTGTTGGTTGTTACTTATTTATGTTGAACAAGTTGATGTGTA GTTTAGTGTAGTGTAATCAGTAATGTAATGATTGAATTCTGAATTTGGGTATTTTATTCAGGAAATTAGCTGAGCTAGGG TATCATAGGAGTGCTAAGAAGTGCAGGGAAAAATTTGAGAACATCTACAAGTACCATAGGAGGACTAAAGAAGGCCGTTT TGGCCGAGCCAACAACAGCGGCAAGACCTATCGATTTTTCGAGCAATTGGAAGCTTTAGAGGGCAACCTGGTTCATCCTC CTTCTTCCTCTGAAGGACAACAACATCATGTTCAACTTCAACCGGACAGAAATGTTGATGTGATTCAAGATGCGGTGCCT TGTTCGTTTAGATTCCCCGGTGCAAATGTGGTGGAGTATTCGAGCTCGGCTACTTGCTCTTCCGGGGAAGGTGGTGAGAA GGGGAAGAAGAAGAGGAAGCTGACGAGGTTTTTCGAGGGGCTGATGAGGGAGGTGATAGAGAGGCAAGAAACGCTGCAGA GGAAGTTCATGGAGGTGCTTGACAAGTGCGAGATGGAGCGAGTAGCGAGGGAGGAAGCGTGGAAGGTTGAAGAGTTGGCG AGGATTCAGAGGGAGCGTGAGGTTCTGGCTCAGGAAAGGGCAATCTCTGCTGCAAAAGATGAAGCCGTGCTTGCCCTTTT GAAAAAGATCACAGAAAACTCTGCAGATGGCACGGTGCAATTACCAGAGAAATTTTATGTTATTCCTGATGAAAATGCTA ATGGGAATGTGAATGGAGAGGGAGAGAAGCAGCATCAAGAGGGTGGAAATGCTAATGTTGGTGTTAATGTTGGGAGTTTC ATACACATGAGCTCATCAAGATGGCCCAAAGAAGAAGTGGAGGCTTTGATACGGTTGAGGACACAGCTTGATGTGCAGTC ACAAGGGAATAATAATGGATCCAATTCCAAGGGACCTCTTTGGGAGGAGATTTCTTCAGCTATGAAGAGCATTGGCTATG ATCGCAGTGCCAAGAGGTGCAAGGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAACAAGAGG AAGCCTACGGATTCCAAAACTTGTCCTTATTATCACCATCTTGAAGCTTTGTACAGCAAAAAGCCTAAGAAGGTGGACGA TTCAGGTAGTTCAGGTAATGAGTTGAAGCCCGAGGAGCTTTTGATGCACATTATGGGGAGTCATGGAGAGAGGCAACAGT TAGAGTCTTCATCCGAAGATGGTGATAGAGAGAACATGGAACAGAACCAGGGTGATAATGATGAAGATCAAGATGAGTAT CAAATGGTTGATAATAGTCCTTCCACAGGAATCATGAGTTGAACTTAATTTGAAGAGCTATTCTTTGATTAACATGTTGG AACTTCTTCTGTGGCAACCAATGAGGGGTTTTGCAATGATTTGTCAAACTTAATGATTTGTCAAACTTGGATCAGTGGGA GATGGGTTGAAAATTGAATCATCAACTAGCAGGAGTAGATTGTAATATTTGATGGTGTTTGGAAGCAATACACTATTCAA AACCAATATCTTTGGTGGTGTCTTTTTGTGAAGTGAACCAAACATGATACGCGGAACACAAGAACAATAAAGAAAGAGAG ATTTGTCTATCTGTAAAAAATAAAGTCACTGGGCGTGTAATTTGATGTTATGAATTTTTTTTCCCTAGAAGTTTGTAATC CCATGTGTGATCAGGTGGGAATAGTTGGATTTGTTTATTTGTGATGATAAAGAAAGGCATAGTGGTGAATGAAAGTGTGT TTTTTGTTTAAAGTAGTGAAATGGATGATTACAACACGCGTGGGCAAAGCAATTGGCTATCATTGTGGAAGGATAATATT CACATTCGCTTTTGCATCAACACTTCCATTTTAAAATAACAAGGGCCTGTCTAACTTACTCTATAGGGCTGTTTTTCTCT TTTTTTATGCTAT
CDS sequence (LotjaGi1g1v0315800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGGAATCTCATCTTTACCGGAAACTCCCATCCAGACCCCGCCGCCGCACCTCGTGCAGGAGGTTGCTGCTGCTTC CGCCGTCGCCGCCGCCACTGATGGAGGACCACTCTCCGATGGGTTCAAAACGGAGCACGGCGAGGATGGAGACCGCAGTT CCGGCGCCAACCGGTGGCCTCGGGAGGAGACAATGGCTCTGCTCAGGATAAGGTCTGAAATGGACGTTGCCTTCAGAGAT ACAAGCCCTAAAGCCCCTCTTTGGGAACAAGTCTCAAGGAAATTAGCTGAGCTAGGGTATCATAGGAGTGCTAAGAAGTG CAGGGAAAAATTTGAGAACATCTACAAGTACCATAGGAGGACTAAAGAAGGCCGTTTTGGCCGAGCCAACAACAGCGGCA AGACCTATCGATTTTTCGAGCAATTGGAAGCTTTAGAGGGCAACCTGGTTCATCCTCCTTCTTCCTCTGAAGGACAACAA CATCATGTTCAACTTCAACCGGACAGAAATGTTGATGTGATTCAAGATGCGGTGCCTTGTTCGTTTAGATTCCCCGGTGC AAATGTGGTGGAGTATTCGAGCTCGGCTACTTGCTCTTCCGGGGAAGGTGGTGAGAAGGGGAAGAAGAAGAGGAAGCTGA CGAGGTTTTTCGAGGGGCTGATGAGGGAGGTGATAGAGAGGCAAGAAACGCTGCAGAGGAAGTTCATGGAGGTGCTTGAC AAGTGCGAGATGGAGCGAGTAGCGAGGGAGGAAGCGTGGAAGGTTGAAGAGTTGGCGAGGATTCAGAGGGAGCGTGAGGT TCTGGCTCAGGAAAGGGCAATCTCTGCTGCAAAAGATGAAGCCGTGCTTGCCCTTTTGAAAAAGATCACAGAAAACTCTG CAGATGGCACGGTGCAATTACCAGAGAAATTTTATGTTATTCCTGATGAAAATGCTAATGGGAATGTGAATGGAGAGGGA GAGAAGCAGCATCAAGAGGGTGGAAATGCTAATGTTGGTGTTAATGTTGGGAGTTTCATACACATGAGCTCATCAAGATG GCCCAAAGAAGAAGTGGAGGCTTTGATACGGTTGAGGACACAGCTTGATGTGCAGTCACAAGGGAATAATAATGGATCCA ATTCCAAGGGACCTCTTTGGGAGGAGATTTCTTCAGCTATGAAGAGCATTGGCTATGATCGCAGTGCCAAGAGGTGCAAG GAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCTACGGATTCCAAAACTTG TCCTTATTATCACCATCTTGAAGCTTTGTACAGCAAAAAGCCTAAGAAGGTGGACGATTCAGGTAGTTCAGGTAATGAGT TGAAGCCCGAGGAGCTTTTGATGCACATTATGGGGAGTCATGGAGAGAGGCAACAGTTAGAGTCTTCATCCGAAGATGGT GATAGAGAGAACATGGAACAGAACCAGGGTGATAATGATGAAGATCAAGATGAGTATCAAATGGTTGATAATAGTCCTTC CACAGGAATCATGAGTTGA
Protein sequence (LotjaGi1g1v0315800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGISSLPETPIQTPPPHLVQEVAAASAVAAATDGGPLSDGFKTEHGEDGDRSSGANRWPREETMALLRIRSEMDVAFRD TSPKAPLWEQVSRKLAELGYHRSAKKCREKFENIYKYHRRTKEGRFGRANNSGKTYRFFEQLEALEGNLVHPPSSSEGQQ HHVQLQPDRNVDVIQDAVPCSFRFPGANVVEYSSSATCSSGEGGEKGKKKRKLTRFFEGLMREVIERQETLQRKFMEVLD KCEMERVAREEAWKVEELARIQREREVLAQERAISAAKDEAVLALLKKITENSADGTVQLPEKFYVIPDENANGNVNGEG EKQHQEGGNANVGVNVGSFIHMSSSRWPKEEVEALIRLRTQLDVQSQGNNNGSNSKGPLWEEISSAMKSIGYDRSAKRCK EKWENINKYFKRMKEKNKRKPTDSKTCPYYHHLEALYSKKPKKVDDSGSSGNELKPEELLMHIMGSHGERQQLESSSEDG DRENMEQNQGDNDEDQDEYQMVDNSPSTGIMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 26 | 60 | 35 | - | – | |
| PANTHER | 32 | 505 | 474 | 1.8E-201 | – | |
| PANTHER | 32 | 505 | 474 | 1.8E-201 | – | |
| MobiDBLite | 41 | 60 | 20 | - | – | |
| SMART | 55 | 117 | 63 | 2.5E-4 | ||
| ProSiteProfiles | 57 | 115 | 59 | 7.399 | ||
| Pfam | 57 | 145 | 89 | 4.7E-19 | – | |
| CDD | 57 | 122 | 66 | 3.01717E-24 | – | |
| Gene3D | 59 | 121 | 63 | 2.7E-25 | – | |
| SMART | 343 | 409 | 67 | 2.2E-6 | ||
| SUPERFAMILY | 344 | 424 | 81 | 3.23E-5 | ||
| ProSiteProfiles | 345 | 407 | 63 | 7.863 | ||
| Pfam | 345 | 436 | 92 | 8.0E-22 | – | |
| CDD | 345 | 414 | 70 | 3.74975E-24 | – | |
| Gene3D | 347 | 413 | 67 | 3.1E-26 | – | |
| MobiDBLite | 440 | 512 | 73 | - | – | |
| MobiDBLite | 472 | 489 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0315800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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