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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0316000 |
| Transcript ID | LotjaGi1g1v0316000.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin; TAIR: AT5G09810.1 actin 7; Swiss-Prot: sp|P53492|ACT7_ARATH Actin-7; TrEMBL-Plants: tr|G7JAX4|G7JAX4_MEDTR Actin 2; Found in the gene: LotjaGi1g1v0316000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76224858..76226391) extracted from Lotus japonicus Gifu genome v1.2.
TTGTATAGAAAACAATGGTATTTGTATTTGAAGTAAAGCTAATATTTAAAGTGTGTAAGTGGCTGTGTTCTTGAGGTTTT CCATTCGAACTTGCAAGTACTGATGATCTTTTAATGCGTACTGTAGTTCGGTAAAAGATGGCTGATGCTGAGGATATTCA ACCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGTTTGTAACTTTGTAGTTTTCTTGGTCATGTTTATGTGAATTT ATTGATCTTAGTTTCTTTGCTGAATGATTTGTTTATTTGTTTGTAATCTGTGTACAGGCAGGATTTGCTGGTGATGATGC TCCCAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAGAAGGATGCCT ATGTGGGTGATGAAGCCCAGTCTAAAAGAGGTATTCTGACTCTGAAGTACCCCATTGAGCATGGTATAGTCAGCAACTGG GATGACATGGAAAAGATCTGGCATCACACCTTTTACAATGAGTTGCGTGTTGCTCCTGAGGAGCACCCGGTGCTTCTAAC TGAGGCTCCACTCAACCCAAAGGCCAACAGAGAAAAGATGACTCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGT ATGTGGCAATTCAGGCTGTCCTCTCCCTGTATGCAAGTGGTCGTACAACTGGTGTGTAGTTCTATCTGTCTTTCTCGGTT CATACTTTTATCATTGTATCATTCTATCGCTGAATCAAATTGTTCCTGTAACAGGTATTGTTTTGGATTCCGGTGATGGT GTGAGTCACACTGTGCCAATCTATGAAGGTTATGCGCTCCCTCATGCTATCCTTCGTTTGGATCTTGCTGGTCGTGATCT GACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGTTACATGTTCACCACCTCAGCTGAGCGGGAAATTGTCCGTGACA TAAAGGAAAAGCTTGCATATGTTGCCTTGGATTATGAACAAGAACTTGAGACTGCAAATAGCAGTTCTTCAATGGAGAAA AACTATGAGCTTCCTGATGGACAAGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCTGAGGTTCTTTTCCAGCCATC TATGATTGGAATGGAAGCTGCTGGAATTCATGAGACTACCTACAACTCCATCATGAAGTGTGACGTGGATATCAGAAAGG ATCTGTATGGCAACATTGTTCTCAGTGGTGGTTCAACTATGTTCCCAGGTATTGCAGACCGTATGAGCAAGGAGATCACT GCCCTGGCTCCCAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAAT CCTTGCATCCCTCAGCACCTTCCAGCAGGTGATTGTTTTGTCACATATTTGCTTTTGCCATTTTTTTCCAGTTAAGATCG AACTCTAAAACATGATTTGGTTTTGCAGATGTGGATATCTAAGGGTGAATATGATGAGTCCGGCCCATCCATTGTCCACA GAAAGTGCTTCTAA
CDS sequence (LotjaGi1g1v0316000.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCAGGATTTGCTGGTGATGA TGCTCCCAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAGAAGGATG CCTATGTGGGTGATGAAGCCCAGTCTAAAAGAGGTATTCTGACTCTGAAGTACCCCATTGAGCATGGTATAGTCAGCAAC TGGGATGACATGGAAAAGATCTGGCATCACACCTTTTACAATGAGTTGCGTGTTGCTCCTGAGGAGCACCCGGTGCTTCT AACTGAGGCTCCACTCAACCCAAAGGCCAACAGAGAAAAGATGACTCAAATCATGTTTGAGACCTTCAATGTGCCTGCCA TGTATGTGGCAATTCAGGCTGTCCTCTCCCTGTATGCAAGTGGTCGTACAACTGGTATTGTTTTGGATTCCGGTGATGGT GTGAGTCACACTGTGCCAATCTATGAAGGTTATGCGCTCCCTCATGCTATCCTTCGTTTGGATCTTGCTGGTCGTGATCT GACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGTTACATGTTCACCACCTCAGCTGAGCGGGAAATTGTCCGTGACA TAAAGGAAAAGCTTGCATATGTTGCCTTGGATTATGAACAAGAACTTGAGACTGCAAATAGCAGTTCTTCAATGGAGAAA AACTATGAGCTTCCTGATGGACAAGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCTGAGGTTCTTTTCCAGCCATC TATGATTGGAATGGAAGCTGCTGGAATTCATGAGACTACCTACAACTCCATCATGAAGTGTGACGTGGATATCAGAAAGG ATCTGTATGGCAACATTGTTCTCAGTGGTGGTTCAACTATGTTCCCAGGTATTGCAGACCGTATGAGCAAGGAGATCACT GCCCTGGCTCCCAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAAT CCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATATCTAAGGGTGAATATGATGAGTCCGGCCCATCCATTGTCCACA GAAAGTGCTTCTAA
Protein sequence (LotjaGi1g1v0316000.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETANSSSSMEK NYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 375 | 372 | 4.8E-265 | – | |
| PANTHER | 4 | 375 | 372 | 4.8E-265 | ||
| Pfam | 5 | 377 | 373 | 1.3E-147 | ||
| SUPERFAMILY | 6 | 155 | 150 | 3.02E-66 | ||
| SMART | 7 | 377 | 371 | 6.2E-237 | ||
| CDD | 10 | 183 | 174 | 2.58649E-18 | – | |
| Gene3D | 10 | 373 | 364 | 1.1E-188 | – | |
| PRINTS | 28 | 37 | 10 | 4.2E-56 | ||
| PRINTS | 51 | 62 | 12 | 4.2E-56 | ||
| ProSitePatterns | 55 | 65 | 11 | - | ||
| PRINTS | 63 | 85 | 23 | 4.2E-56 | ||
| ProSitePatterns | 106 | 118 | 13 | - | ||
| PRINTS | 117 | 130 | 14 | 4.2E-56 | ||
| Gene3D | 140 | 340 | 201 | 1.1E-188 | – | |
| PRINTS | 142 | 161 | 20 | 4.2E-56 | ||
| SUPERFAMILY | 149 | 377 | 229 | 9.72E-98 | ||
| Gene3D | 182 | 274 | 93 | 1.1E-188 | – | |
| PRINTS | 238 | 254 | 17 | 4.2E-56 | ||
| ProSitePatterns | 358 | 366 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0316000.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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