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LotjaGi1g1v0318000.1

Overview

Field Value
Gene ID LotjaGi1g1v0318000
Transcript ID LotjaGi1g1v0318000.1
Lotus japonicus genome version Gifu v1.2
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O81313|IND_ARATH Transcription factor IND; TrEMBL-Plants: tr|C0JP18|C0JP18_LOTJA Putative basic helix-loop-helix protein BHLH13; Found in the gene: LotjaGi1g1v0318000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:76577797..76579219) extracted from Lotus japonicus Gifu genome v1.2.

CTCTCATTTCAGTGAAAACTCCATCGTTTCAAGTACTTTTTCTCTCTAATTCGGCCCCTCTCTACTCTTGCAACCCCTTT TCAAACCATCATTGACAAATTGCATGCTGAAAGAGGACGAGAAAACTTCAAGGTAACCTTAAGTTCTTAACTATCAATTC CTTTCTCTCCCCACATCCTTGTACTCAGAGAGTTATATATTACATGGTTTTAAATTATAGTCCCCAACTGCAATTACACT AGTTATATAAAGAGTTTTCAAGTCCTCAACAACAGCATCACAATTGCAATTGCATCAACCTGCATTTGTCAATGATTTCT CGACAGCGGTCGCAATTTAAAACCTTGGAGAGACATTAAACCTTAGTTTATAAATATCTCTCTTCCCTCAAAAACCAATC AGGTAGAATAGAAGAAGTCCATATTAATTTCTTCATATTTTGGAGCCATGGACACCAACCAGAATGCTACTACCACATTC ACAAATGTTACAAATAACACTTGGAATCTTGAGAGGATGAAAACAAGTGGGGGTGAGAACAACATGACTATCTTCCATAA TGACCATCAAATTCCAATAGGCCTTGGAATCTGGCCTAACAATTACCACACACCATCCTCACCCTCACCCTCACCCTCAG CCACCACAATGCTCTCTTCAAGCTTCCTCAGTGATATGCTTGGAATCAACATCGAAGAAGACGAAGGCGAAGAAGAGGAT AAAGAAGAAGATGAAGAGCTAGGAGCGATGAAGGAGATGATGTACAAGATTGCGGTGATGCAGCCGGTGGACATCGACCC GGCCGCCATCAGAAAACCAAAGAGGAAGAACGTGCGCATAAGTGATGACCCGCAGAGCGTGGCTGCACGGCACAGGCGAG AGAGGATAAGTGAGAAGATCCGCATCTTGCAAAGACTCGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTGGAT GAAGCCATTCACTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTCCAATCAACCCCAAATTCTCAACATCATCAACA ACACCCTCCTCCAACACCAACAAGTTGCAATGTTCCTGGTTTTACTAGTGAATTGTTTTTGGCCACCACCGGTAGTTATT GGCCTTTTGCACCAACTATAGTACTGCAAGGTTCCACTACCACCACCACCTCCGCCCTAGGACATGGCTATGCTGGTGAT GATGGCTTTAAGCATCATGAGGTAGTTAGTGAATGATTAGTATTTTTGATTTGTGGCTTAAGTAATTACGGGAATATATA TGAGTATGGTCAATGCGTGGATGATCAAATTAGTCATTGATAAGTTTGTTTATAAAAGAAGGAAATACTCATGTAGTTTT TTATTGTATAAAATGTGTGTCAAGTCCCTAAAGACTGACTTAGAGACTAAGTCGATCGACCAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0318000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACCAACCAGAATGCTACTACCACATTCACAAATGTTACAAATAACACTTGGAATCTTGAGAGGATGAAAACAAG TGGGGGTGAGAACAACATGACTATCTTCCATAATGACCATCAAATTCCAATAGGCCTTGGAATCTGGCCTAACAATTACC ACACACCATCCTCACCCTCACCCTCACCCTCAGCCACCACAATGCTCTCTTCAAGCTTCCTCAGTGATATGCTTGGAATC AACATCGAAGAAGACGAAGGCGAAGAAGAGGATAAAGAAGAAGATGAAGAGCTAGGAGCGATGAAGGAGATGATGTACAA GATTGCGGTGATGCAGCCGGTGGACATCGACCCGGCCGCCATCAGAAAACCAAAGAGGAAGAACGTGCGCATAAGTGATG ACCCGCAGAGCGTGGCTGCACGGCACAGGCGAGAGAGGATAAGTGAGAAGATCCGCATCTTGCAAAGACTCGTCCCTGGT GGAACCAAAATGGACACTGCTTCCATGCTGGATGAAGCCATTCACTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCT CCAATCAACCCCAAATTCTCAACATCATCAACAACACCCTCCTCCAACACCAACAAGTTGCAATGTTCCTGGTTTTACTA GTGAATTGTTTTTGGCCACCACCGGTAGTTATTGGCCTTTTGCACCAACTATAGTACTGCAAGGTTCCACTACCACCACC ACCTCCGCCCTAGGACATGGCTATGCTGGTGATGATGGCTTTAAGCATCATGAGGTAGTTAGTGAATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0318000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTNQNATTTFTNVTNNTWNLERMKTSGGENNMTIFHNDHQIPIGLGIWPNNYHTPSSPSPSPSATTMLSSSFLSDMLGI NIEEDEGEEEDKEEDEELGAMKEMMYKIAVMQPVDIDPAAIRKPKRKNVRISDDPQSVAARHRRERISEKIRILQRLVPG GTKMDTASMLDEAIHYVKFLKRQIRLLQSTPNSQHHQQHPPPTPTSCNVPGFTSELFLATTGSYWPFAPTIVLQGSTTTT TSALGHGYAGDDGFKHHEVVSE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45914:SF16
10 214 205 3.4E-81 –
PANTHER
PTHR45914
10 214 205 3.4E-81 –
ProSiteProfiles
PS50888
131 180 50 14.723
IPR011598
Gene3D
G3DSA:4.10.280.10
132 191 60 5.4E-11
IPR036638
CDD
cd00083
137 185 49 2.1308E-11
IPR011598
SMART
SM00353
137 186 50 1.2E-12
IPR011598
SUPERFAMILY
SSF47459
140 205 66 1.44E-14
IPR036638
Pfam
PF00010
141 180 40 8.1E-7
IPR011598
MobiDBLite
mobidb-lite
190 210 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0318000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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