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LotjaGi1g1v0318800.3

Overview

Field Value
Gene ID LotjaGi1g1v0318800
Transcript ID LotjaGi1g1v0318800.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein; TAIR: AT5G64060.1 NAC domain containing protein 103; Swiss-Prot: sp|Q9FY82|NAC82_ARATH NAC domain-containing protein 82; TrEMBL-Plants: tr|A0A072V177|A0A072V177_MEDTR NAC domain class transcription factor; Found in the gene: LotjaGi1g1v0318800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:76785901..76789418) extracted from Lotus japonicus Gifu genome v1.2.

CAACGATTTCGAAATCGGAGTGCGAGGCTTGTGCTTCCTCCTTCTCCTCCTTCTCTGGTAAGCTTCCTCTCTGTTCTCCG ATGAACTGCGATTTCACGCGATCATGAAACATTGAAACCCTTGTTTCTCAAACGAACTTCAATTTCAATTTGCAATGTTA GGGTTTCCACTGTGCCGATGACTTTTCTTCTCACAAAGGCATCGTCATCATCCATTGTGGGCTTCCAGTTCCGCCGCCAT TGCTCCTCCTTCATGAGCCGCCGCAGACTCTGGTGTTCCTGGGATTTCTTCTTCCGCCACTGGACTTGACTCACCCCATT TTTAGGGTTGTTTAAATTTTTCACGCTCATTATTTGCTGCTTATTGCTTTTCCTTCTTCTTCTTGTTGGTTTGGTTTGCT GCTACGGACACAAATTTCACTGTTGGTGAGGAAGTGTTGTTGGATTCCGGTGTTGTTGTTGTTGGTTAAGGTCGTTCGTT AGTTTCTGAAGCACTTCCTCTTTGGGTTTTTTGTTTTGTTGTTTTTTGCTTTTTTTTTCTCCTTTCAATGGCCGATACAA AATTGATTCCAGGGTTTCGTTTTCATCCCACTGATGTTGAGCTGATTATGTACTTTCTGAAGAGGAAGATCCTCGGTCGA AAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCGTGGGATCTTCCAGGTTTGTCTCCATTCTT TGCCTGCTATTAGAGTGGTGTAGTGTAATGTAGTGTGTAGTATAGTGTGGCTTCCCGTAGAAATGAAATGATCTAATTTT TTGTTGGTTAGTAGTAGAATGGTAATATATAGTATAGCATAATAGAGTTATAGTGGTAATACCGTAAAATAAGTACCATT TTTGTTAAACTGATGTATTTATTGTTTTTATTATCAGATAAGTCTGTGCTCAAAACTGGGGATTTGAAATGGTACTTCTT TTGTCCTCGTGGAATGAAATATTCCACTGGAGGGAAGCTGAACAGGGCTACGGAATTTGGGTACTGGAAGACTACTGGGA AGGACAGATCAGTTGAGCACAAAAATCAGGTTGTGGGGATGATAAGAACCCTGGTATTTCACATCGGCAGAGCCCCTAAG GGAGACCGAACTGATTGGGTTATGCACGAGTTCAGAATTGAACACAAGGACCTGGCTGACAAAGGCATTCCGCAGGTTAG TAAATAACTTTGACTGAGAAAATGTGTTAGTTGGTTGTGAACTGATTTTGGGTTTGTGCCTGTGAGTGCATGCATGGAAT GTCTTTAATGGAACCTATTTCAATTCATATAGATTAGAGCTTGTTGGATATGGTATCAGAATTGAATTATGTCTTTTCAT GTGAAACCTTACTATATATAAACTGATTCGTGGCAGTAGATGTGACAACCTTTATTTGTGATTTTATTCTTGTGGACCTC CCCTGGTACATTCTTAATTTAGTTTGTTTGGCGATTTGATTCCTTGTGTATTTCTGGTTGTTTTTCTCTGGTTGTTTTTC TCATGTATTTATTTTAATTTTTCTGGTTTATTTGTACCTATTTAATATATAGGGTATTCCAAAAGGAGGGTCCTTGACCC AGAAATGATGCACAATGTGTTTTCAAGTTAAACCTTACTATATGAAGTTTATAAACTGATTTATGGCAGTAGATGCTCAG TGTATGTTTAACTTATATGGCATAAAATGCCAAACTTTATTTGTGATTTTATTACTGTGCATTTGACTAATTTGGCATCC CTTTGGTACATTCTTAAATTGGTATATTTGGCCAATTGTCTCCTTGTGTATTTCTGATTGTTTTTCTTGTGTATTTATGT AAATTGTTCGACTGGTTTATTTGTATTGCAGGATTCCTATGTAATTTGTAGGGTATTCCAAAAGGAGGGCCCTGGACCCA GGAATGGTGCACAGTATGGAAAACCATTTAATGAGGAAGATTGGGATGAAGATGAGGAAATTGACAGTAAACAATCTATG CCTGTTGCTACTACATCTGCTCCAGGTCCTGTTCTACCCACTGCAAGTCTTGTTGCGGTTACAAATGACATGCATACCTC TCCAAGTGTATGCATGGGACTGACCTCTGAATTATGTCTATCAGGATTAGTGCCCTCTTGCTCCACACATCCTTCAGCTC CAAATAATCAAGTTGACAAGTTCAAAGAATCTGATAACACAAATTACATGCATGCCTCTCCAAGTGGATGCATGGGGTTG ACCTCTGAATCATGTCTATCAGGATTGGTGCCCTCTTGCTCCACACATCCTTCAGCTCCAAACAATCAAGTTGACGAGTT CAAAGAATATGATAACACATTATCCGTGAATGATTACAATGGAAATGAGGTGCACAATCCGTTTCTTGTTATTTATTATA CTTTTTGTGAAATCTTGGTGTGATTGGTTTGCTGTTTATGACTTCGCATCTGTTTATGACTTCGCATGTCACCAGCTTTT TTCTTATCCTTTTTCATTTTGTACGAGCTTAACTGTGTACCTTCAAGGATTTAAAGGAATTCTACATTCTATTTCTGTCT AAATTGGACTATTAATATAATTGGAGGATCCGCCTGATAACTCCCCATCAGGAAACTAGCAAGTAATGGTTAATTTCCAT GAAATAAACTATAGGAAGCAGACCTAATTTTGCAATCTCTCCTTTTTTTGGTCAGTATGGGTGGGGCCTTAGTTTCGAGA AGATTTTTGTCTAGTAGTTTGCCCTTTTTTCTATGTTCATTCTTGTAGCTTGCTGTGAGGCATGAGAATGTTGAGTTGCT GTCTAACCTTTTTTTCTCAGTTGTTGAACAATTAAAGCTACTAATCAAAATGTCAGTATATAATGTAAATTGTATGGTCT TTTATCTCCAAGTTTATTGTGTAGTTTTTCGGTATATTTTAATTTTTAACCCTATAATTATACAAAATCATATAAAATGT TTAATATGCTTGCTTTTATCCTCCATTTCTCATACTAATTTTGTTTTTATGGGATAGCAGAAGGTTGATCATCCTGATCT GGCAAATAATGCTGAAGGTGGACCTTATCAAGATCCAAATGAGATTTTTGGTGAACTAGGGGACCTTGATAGCTTGCTTG GATTGGGTGAAGCAGACCTTAGAGGAGACCCTTTTTCCCGTGGCCAGGAGGATGAATGTACTACAAACGAAATGCTGTCT ACGTCCTCGTGGTTTTGCGGTGATGGAGACTTCTTGGAATTGATTGATCTTGATTCTTGATCTGCCATTGTTCTGGCAGA CTAAACAAGGTGGAAGTTGGAGCCAAGAAAATTGAGCAAGTAATAACTATTGCTGCAAGTACCTGATGCGGATTATGAAA TGCCATAGATTCTCTTACTGTTTTCCGTTTAAGAACGCCTTAGGGTGGCATAAGTTTTGTCTATTTGAGCATTAATTTCT TGAACTAGCTAGCATGTTGTCATGCTGGAAACTATGTCTCTGTTTTGATTTAATTCTTTTTATGCAGGAGTTTCCCAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0318800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTACTTTCTGAAGAGGAAGATCCTCGGTCGAAAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGC TCCGTGGGATCTTCCAGATAAGTCTGTGCTCAAAACTGGGGATTTGAAATGGTACTTCTTTTGTCCTCGTGGAATGAAAT ATTCCACTGGAGGGAAGCTGAACAGGGCTACGGAATTTGGGTACTGGAAGACTACTGGGAAGGACAGATCAGTTGAGCAC AAAAATCAGGTTGTGGGGATGATAAGAACCCTGGTATTTCACATCGGCAGAGCCCCTAAGGGAGACCGAACTGATTGGGT TATGCACGAGTTCAGAATTGAACACAAGGACCTGGCTGACAAAGGCATTCCGCAGGATTCCTATGTAATTTGTAGGGTAT TCCAAAAGGAGGGCCCTGGACCCAGGAATGGTGCACAGTATGGAAAACCATTTAATGAGGAAGATTGGGATGAAGATGAG GAAATTGACAGTAAACAATCTATGCCTGTTGCTACTACATCTGCTCCAGGTCCTGTTCTACCCACTGCAAGTCTTGTTGC GGTTACAAATGACATGCATACCTCTCCAAGTGTATGCATGGGACTGACCTCTGAATTATGTCTATCAGGATTAGTGCCCT CTTGCTCCACACATCCTTCAGCTCCAAATAATCAAGTTGACAAGTTCAAAGAATCTGATAACACAAATTACATGCATGCC TCTCCAAGTGGATGCATGGGGTTGACCTCTGAATCATGTCTATCAGGATTGGTGCCCTCTTGCTCCACACATCCTTCAGC TCCAAACAATCAAGTTGACGAGTTCAAAGAATATGATAACACATTATCCGTGAATGATTACAATGGAAATGAGAAGGTTG ATCATCCTGATCTGGCAAATAATGCTGAAGGTGGACCTTATCAAGATCCAAATGAGATTTTTGGTGAACTAGGGGACCTT GATAGCTTGCTTGGATTGGGTGAAGCAGACCTTAGAGGAGACCCTTTTTCCCGTGGCCAGGAGGATGAATGTACTACAAA CGAAATGCTGTCTACGTCCTCGTGGTTTTGCGGTGATGGAGACTTCTTGGAATTGATTGATCTTGATTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0318800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYFLKRKILGRKFPFDVIAELDIYKYAPWDLPDKSVLKTGDLKWYFFCPRGMKYSTGGKLNRATEFGYWKTTGKDRSVEH KNQVVGMIRTLVFHIGRAPKGDRTDWVMHEFRIEHKDLADKGIPQDSYVICRVFQKEGPGPRNGAQYGKPFNEEDWDEDE EIDSKQSMPVATTSAPGPVLPTASLVAVTNDMHTSPSVCMGLTSELCLSGLVPSCSTHPSAPNNQVDKFKESDNTNYMHA SPSGCMGLTSESCLSGLVPSCSTHPSAPNNQVDEFKEYDNTLSVNDYNGNEKVDHPDLANNAEGGPYQDPNEIFGELGDL DSLLGLGEADLRGDPFSRGQEDECTTNEMLSTSSWFCGDGDFLELIDLDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51005
1 136 136 44.551
IPR003441
SUPERFAMILY
SSF101941
1 136 136 1.31E-47
IPR036093
Gene3D
G3DSA:3.30.310.150
1 139 139 4.2E-49
IPR036093
PANTHER
PTHR31989:SF252
2 167 166 2.3E-83 –
PANTHER
PTHR31989
2 167 166 2.3E-83 –
Pfam
PF02365
2 113 112 1.9E-23
IPR003441
MobiDBLite
mobidb-lite
141 161 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0318800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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