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LotjaGi1g1v0318800.4

Overview

Field Value
Gene ID LotjaGi1g1v0318800
Transcript ID LotjaGi1g1v0318800.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein; TAIR: AT5G64060.1 NAC domain containing protein 103; Swiss-Prot: sp|Q9FY82|NAC82_ARATH NAC domain-containing protein 82; TrEMBL-Plants: tr|G7JBJ4|G7JBJ4_MEDTR NAC domain class transcription factor; Found in the gene: LotjaGi1g1v0318800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:76785905..76789473) extracted from Lotus japonicus Gifu genome v1.2.

GATTTCGAAATCGGAGTGCGAGGCTTGTGCTTCCTCCTTCTCCTCCTTCTCTGGTAAGCTTCCTCTCTGTTCTCCGATGA ACTGCGATTTCACGCGATCATGAAACATTGAAACCCTTGTTTCTCAAACGAACTTCAATTTCAATTTGCAATGTTAGGGT TTCCACTGTGCCGATGACTTTTCTTCTCACAAAGGCATCGTCATCATCCATTGTGGGCTTCCAGTTCCGCCGCCATTGCT CCTCCTTCATGAGCCGCCGCAGACTCTGGTGTTCCTGGGATTTCTTCTTCCGCCACTGGACTTGACTCACCCCATTTTTA GGGTTGTTTAAATTTTTCACGCTCATTATTTGCTGCTTATTGCTTTTCCTTCTTCTTCTTGTTGGTTTGGTTTGCTGCTA CGGACACAAATTTCACTGTTGGTGAGGAAGTGTTGTTGGATTCCGGTGTTGTTGTTGTTGGTTAAGGTCGTTCGTTAGTT TCTGAAGCACTTCCTCTTTGGGTTTTTTGTTTTGTTGTTTTTTGCTTTTTTTTTCTCCTTTCAATGGCCGATACAAAATT GATTCCAGGGTTTCGTTTTCATCCCACTGATGTTGAGCTGATTATGTACTTTCTGAAGAGGAAGATCCTCGGTCGAAAGT TCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCGTGGGATCTTCCAGGTTTGTCTCCATTCTTTGCC TGCTATTAGAGTGGTGTAGTGTAATGTAGTGTGTAGTATAGTGTGGCTTCCCGTAGAAATGAAATGATCTAATTTTTTGT TGGTTAGTAGTAGAATGGTAATATATAGTATAGCATAATAGAGTTATAGTGGTAATACCGTAAAATAAGTACCATTTTTG TTAAACTGATGTATTTATTGTTTTTATTATCAGATAAGTCTGTGCTCAAAACTGGGGATTTGAAATGGTACTTCTTTTGT CCTCGTGGAATGAAATATTCCACTGGAGGGAAGCTGAACAGGGCTACGGAATTTGGGTACTGGAAGACTACTGGGAAGGA CAGATCAGTTGAGCACAAAAATCAGGTTGTGGGGATGATAAGAACCCTGGTATTTCACATCGGCAGAGCCCCTAAGGGAG ACCGAACTGATTGGGTTATGCACGAGTTCAGAATTGAACACAAGGACCTGGCTGACAAAGGCATTCCGCAGGTTAGTAAA TAACTTTGACTGAGAAAATGTGTTAGTTGGTTGTGAACTGATTTTGGGTTTGTGCCTGTGAGTGCATGCATGGAATGTCT TTAATGGAACCTATTTCAATTCATATAGATTAGAGCTTGTTGGATATGGTATCAGAATTGAATTATGTCTTTTCATGTGA AACCTTACTATATATAAACTGATTCGTGGCAGTAGATGTGACAACCTTTATTTGTGATTTTATTCTTGTGGACCTCCCCT GGTACATTCTTAATTTAGTTTGTTTGGCGATTTGATTCCTTGTGTATTTCTGGTTGTTTTTCTCTGGTTGTTTTTCTCAT GTATTTATTTTAATTTTTCTGGTTTATTTGTACCTATTTAATATATAGGGTATTCCAAAAGGAGGGTCCTTGACCCAGAA ATGATGCACAATGTGTTTTCAAGTTAAACCTTACTATATGAAGTTTATAAACTGATTTATGGCAGTAGATGCTCAGTGTA TGTTTAACTTATATGGCATAAAATGCCAAACTTTATTTGTGATTTTATTACTGTGCATTTGACTAATTTGGCATCCCTTT GGTACATTCTTAAATTGGTATATTTGGCCAATTGTCTCCTTGTGTATTTCTGATTGTTTTTCTTGTGTATTTATGTAAAT TGTTCGACTGGTTTATTTGTATTGCAGGATTCCTATGTAATTTGTAGGGTATTCCAAAAGGAGGGCCCTGGACCCAGGAA TGGTGCACAGTATGGAAAACCATTTAATGAGGAAGATTGGGATGAAGATGAGGAAATTGACAGTAAACAATCTATGCCTG TTGCTACTACATCTGCTCCAGGTCCTGTTCTACCCACTGCAAGTCTTGTTGCGGTTACAAATGACATGCATACCTCTCCA AGTGTATGCATGGGACTGACCTCTGAATTATGTCTATCAGGATTAGTGCCCTCTTGCTCCACACATCCTTCAGCTCCAAA TAATCAAGTTGACAAGTTCAAAGAATCTGATAACACAAATTACATGCATGCCTCTCCAAGTGGATGCATGGGGTTGACCT CTGAATCATGTCTATCAGGATTGGTGCCCTCTTGCTCCACACATCCTTCAGCTCCAAACAATCAAGTTGACGAGTTCAAA GAATATGATAACACATTATCCGTGAATGATTACAATGGAAATGAGGTGCACAATCCGTTTCTTGTTATTTATTATACTTT TTGTGAAATCTTGGTGTGATTGGTTTGCTGTTTATGACTTCGCATCTGTTTATGACTTCGCATGTCACCAGCTTTTTTCT TATCCTTTTTCATTTTGTACGAGCTTAACTGTGTACCTTCAAGGATTTAAAGGAATTCTACATTCTATTTCTGTCTAAAT TGGACTATTAATATAATTGGAGGATCCGCCTGATAACTCCCCATCAGGAAACTAGCAAGTAATGGTTAATTTCCATGAAA TAAACTATAGGAAGCAGACCTAATTTTGCAATCTCTCCTTTTTTTGGTCAGTATGGGTGGGGCCTTAGTTTCGAGAAGAT TTTTGTCTAGTAGTTTGCCCTTTTTTCTATGTTCATTCTTGTAGCTTGCTGTGAGGCATGAGAATGTTGAGTTGCTGTCT AACCTTTTTTTCTCAGTTGTTGAACAATTAAAGCTACTAATCAAAATGTCAGTATATAATGTAAATTGTATGGTCTTTTA TCTCCAAGTTTATTGTGTAGTTTTTCGGTATATTTTAATTTTTAACCCTATAATTATACAAAATCATATAAAATGTTTAA TATGCTTGCTTTTATCCTCCATTTCTCATACTAATTTTGTTTTTATGGGATAGCAGAAGGTTGATCATCCTGATCTGGCA AATAATGCTGAAGGTGGACCTTATCAAGATCCAAATGAGATTTTTGGTGAACTAGGGGACCTTGATAGCTTGCTTGGATT GGGTGAAGCAGACCTTAGAGGAGACCCTTTTTCCCGTGGCCAGGAGGATGAATGTACTACAAACGAAATGCTGTCTACGT CCTCGTGGTTTTGCGGTGATGGAGACTTCTTGGAATTGATTGATCTTGATTCTTGATCTGCCATTGTTCTGGCAGACTAA ACAAGGTGGAAGTTGGAGCCAAGAAAATTGAGCAAGTAATAACTATTGCTGCAAGTACCTGATGCGGATTATGAAATGCC ATAGATTCTCTTACTGTTTTCCGTTTAAGAACGCCTTAGGGTGGCATAAGTTTTGTCTATTTGAGCATTAATTTCTTGAA CTAGCTAGCATGTTGTCATGCTGGAAACTATGTCTCTGTTTTGATTTAATTCTTTTTATGCAGGAGTTTCCCAATATCTA CATTCTATGCATTTTTACTTGTTGAAGATAGAGTCAGATATATTAATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0318800.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGATACAAAATTGATTCCAGGGTTTCGTTTTCATCCCACTGATGTTGAGCTGATTATGTACTTTCTGAAGAGGAA GATCCTCGGTCGAAAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCGTGGGATCTTCCAGATA AGTCTGTGCTCAAAACTGGGGATTTGAAATGGTACTTCTTTTGTCCTCGTGGAATGAAATATTCCACTGGAGGGAAGCTG AACAGGGCTACGGAATTTGGGTACTGGAAGACTACTGGGAAGGACAGATCAGTTGAGCACAAAAATCAGGTTGTGGGGAT GATAAGAACCCTGGTATTTCACATCGGCAGAGCCCCTAAGGGAGACCGAACTGATTGGGTTATGCACGAGTTCAGAATTG AACACAAGGACCTGGCTGACAAAGGCATTCCGCAGGATTCCTATGTAATTTGTAGGGTATTCCAAAAGGAGGGCCCTGGA CCCAGGAATGGTGCACAGTATGGAAAACCATTTAATGAGGAAGATTGGGATGAAGATGAGGAAATTGACAGTAAACAATC TATGCCTGTTGCTACTACATCTGCTCCAGGATTGGTGCCCTCTTGCTCCACACATCCTTCAGCTCCAAACAATCAAGTTG ACGAGTTCAAAGAATATGATAACACATTATCCGTGAATGATTACAATGGAAATGAGAAGGTTGATCATCCTGATCTGGCA AATAATGCTGAAGGTGGACCTTATCAAGATCCAAATGAGATTTTTGGTGAACTAGGGGACCTTGATAGCTTGCTTGGATT GGGTGAAGCAGACCTTAGAGGAGACCCTTTTTCCCGTGGCCAGGAGGATGAATGTACTACAAACGAAATGCTGTCTACGT CCTCGTGGTTTTGCGGTGATGGAGACTTCTTGGAATTGATTGATCTTGATTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0318800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADTKLIPGFRFHPTDVELIMYFLKRKILGRKFPFDVIAELDIYKYAPWDLPDKSVLKTGDLKWYFFCPRGMKYSTGGKL NRATEFGYWKTTGKDRSVEHKNQVVGMIRTLVFHIGRAPKGDRTDWVMHEFRIEHKDLADKGIPQDSYVICRVFQKEGPG PRNGAQYGKPFNEEDWDEDEEIDSKQSMPVATTSAPGLVPSCSTHPSAPNNQVDEFKEYDNTLSVNDYNGNEKVDHPDLA NNAEGGPYQDPNEIFGELGDLDSLLGLGEADLRGDPFSRGQEDECTTNEMLSTSSWFCGDGDFLELIDLDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31989
4 195 192 2.3E-94 –
PANTHER
PTHR31989:SF252
4 195 192 2.3E-94 –
SUPERFAMILY
SSF101941
4 156 153 1.83E-58
IPR036093
ProSiteProfiles
PS51005
6 156 151 53.625
IPR003441
Pfam
PF02365
8 133 126 3.4E-33
IPR003441
Gene3D
G3DSA:3.30.310.150
15 159 145 9.6E-53
IPR036093
MobiDBLite
mobidb-lite
159 183 25 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0318800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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