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LotjaGi1g1v0319800.2

Overview

Field Value
Gene ID LotjaGi1g1v0319800
Transcript ID LotjaGi1g1v0319800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pectin lyase-like superfamily protein; TAIR: AT4G33440.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0R0JHL8|A0A0R0JHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0319800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:76903976..76906734) extracted from Lotus japonicus Gifu genome v1.2.

TGTAATAAACAAGTCAATTGGAAAGTCTTTTTCATTTTTCAATAAAATTGCAGTGTTTTTGTTTTCCTCTCTTTGGAAAA GTAGTGAGATGTTGCTTTTTGACTTCTTTGGCGATATGTGGTACATAGTCCAGAAACAAAATGGAACCCACCAAATAATG ATGTCTGTTTTATACCTTGCAAGTTTTATTTTCCTATTTATTTTTATTCTGTAAACACTTTTATGTTGATTAATTATACT TATGGCAATTTGATTTAAGTGTAATATTTTTTTTGCTAATTAGAAGTTTCAATTAACAGGACCCAGAAGAATGGCCTATA ATTGAACCATTGCCATCTTATGGAAGAGGCAGAGAAAGGTTAGGTGGAAGACATATTAGCCTTATACATGGAAATGGAGT CCGCAATGTTATCATCACAGGTAAAATTTATGGACTTTTTCCTTCAATTCTCACTTATTAATTTGGGAAAGAGAAAGGGA GAGAGAGAAAAGTAAAAAAATATTCCTCCTTTTTGGCACAATGCTAGCAAAATAGGCCCCGTTTGGATAAACAGCTTAAT TAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCGCTTATTCATAAGCTATTTTTAAAAATTTATTGAAATAAATTAA AAATAAGTTGTGTATAAGCATAAGCTGTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTGAAAATAGCTTAT GGCAGACCATAAGCTGTTTGCATAAGCTCTCCCAAACACTGGCATAAGAGCTTATGCTGTCAGATAAGCTCAAATAAGCT CTTCCAAACTGGGCCATAGTCTCTGAAGACTGAAGGCGAAATTGGGTTACCTAGTCCATGAGGGCTCCAATGACTACTAC TATGTTCAAAAGTTTCAACTTTCAACGCAGTGATTGATGCTAATTTAAGGGGAAAAAGCCAAAAAATAATTTAGTTATCT GGTTTTGTAGGACAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCA CACAAGGGGCCACCTCCTTGAACTAATGTACTCTGACAATGTTCTTGTCTCCAACCTCACCTTTCGAAATTCTCCATTTT GGACCATCCATCCTGTTTACTGCAGGTTTGATCTTCTTGGCTCTTTGTCTCTTGTGTTAGTCCTAAGGGGCGTTTGTTTC AAGGTTTGAGATCGCATTCCCGGGAATGCGGGAATGTTATTCTCAGGAATATGATTACCGGGTATGTTATTCCTGGGTAA ATTTTATAAATGTGTTTGGTAAGTATTTTGTATTTCCGGGAACATTTTAAAATTTTCTTAATTTAAAAATTAAAAAAACT TAAAAATAAAGGTAAAAATGATAAATTGTGGGAGAAGTGGGAAGTTACATTCATCTTTTCCATGGGAATGTAAGATTCCC AACCTTTTTCATGGGAATCAATATGAAGGAAATCATGAGAATTGTGAAAGTTATTTTATTCCCGGGAATGATTGATACCC AGGAATCATAGTTTCCAATCTTGTAACAAACGCAGAAATGTTCATTCCCAACCTTCATATTCCCGGGAATCTCTTTCCAA ATCTTGAAACAAACGCCTCCTAATTGGTACTATAATACCATAAAATGCAGCTAACAAATTTCTCAAATTATCAGGAGCAT TTTCAAAACACACTCCTAATAGCTCTGAGTGATTTTTTGGGAAACTATTAAATCGTAATTTAGTTCAATTAAATGGATAT CTTTTTACATTGTGCACATTGCAAAATCATACCCTGTCTGATCATACATGCTGAAAGAAATTCAGTTTAATTATGCTGAT AGCTTTTGTAACTACAGAAACACTTGAAATTCAATAACAGCTTTTTCATATTGTTGTTTCAGTAATGTTGTGATCAAAGG AATGACAATCTTGGCTCCTCTCAATGCTCCAAACACTGATGGCATAGACCCAGGTTTGTCCTTTTTTACTATTTACCCTC TTTCCTGCATTCTTTTATCCTTGGCTTAGAGCTTCCTGTGCACAAATTCAAGTGGACAAGTGATAGACATAAATAACTTT ACAGTCTCTTATCTTACCTGTTAATTTCCTTTATGATGATTCAGACTCAAGCACCAACGTATGCATTGAAGATAACTACA TAGAAAGTGGAGATGATCTAGTAGCCATCAAGAGTGGTTGGGATCACTATGGAATCACCATGGCCCGTCCAAGCACCAAC ATCATAGTGCGGAGAGTTTCGGGCACCACCCCAACTTGTTCTGGAGTAGGAATAGGCAGCGAGATGTCTGGTGGAATTGC AAACATTACAATTGAGAATTTGCACGTGTGGGATTCTGCAGCTGGTGTTCGCATAAAATCTGATAAAGGCAGAGGGGGCT ATATAACAAATGTTAGTATAAGTGATATAAGAATGGAGAGAGTGAAGATACCTATTAGGTTCAGTAGAGGTTCAAACGAC CACCCTGATGATGGGTGGGATCCAAAAGCTGTTCCAAGATTCAAGGACATTTTAATCAGTAATATAATTTGTGTGAATTC AACAAAAGCCCCAGTTTTGGAAGGCGTAGAGGGCTCATCATTTGAAGGCTTGTGTTTCAGAAATATTTCTCTTATTGGTG TTGCCTCATCTTCAACATGGCATTGTGAACATGTCTCTGGTTTTGCCACTGATGTGTTACCTGTGCCATGTTCTGAGTTG AAGAACAATGCCAACTCATCTTGGTGTTCACCTTCCTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0319800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACCCAGAAGAATGGCCTATAATTGAACCATTGCCATCTTATGGAAGAGGCAGAGAAAGGTTAGGTGGAAGACATAT TAGCCTTATACATGGAAATGGAGTCCGCAATGTTATCATCACAGGACAAAATGGGACAGTTGATGGTCAAGGGAAGATGT GGTGGGAACTTTGGTGGAACAGAACATTGGAGCACACAAGGGGCCACCTCCTTGAACTAATGTACTCTGACAATGTTCTT GTCTCCAACCTCACCTTTCGAAATTCTCCATTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGATCAAAGGAAT GACAATCTTGGCTCCTCTCAATGCTCCAAACACTGATGGCATAGACCCAGACTCAAGCACCAACGTATGCATTGAAGATA ACTACATAGAAAGTGGAGATGATCTAGTAGCCATCAAGAGTGGTTGGGATCACTATGGAATCACCATGGCCCGTCCAAGC ACCAACATCATAGTGCGGAGAGTTTCGGGCACCACCCCAACTTGTTCTGGAGTAGGAATAGGCAGCGAGATGTCTGGTGG AATTGCAAACATTACAATTGAGAATTTGCACGTGTGGGATTCTGCAGCTGGTGTTCGCATAAAATCTGATAAAGGCAGAG GGGGCTATATAACAAATGTTAGTATAAGTGATATAAGAATGGAGAGAGTGAAGATACCTATTAGGTTCAGTAGAGGTTCA AACGACCACCCTGATGATGGGTGGGATCCAAAAGCTGTTCCAAGATTCAAGGACATTTTAATCAGTAATATAATTTGTGT GAATTCAACAAAAGCCCCAGTTTTGGAAGGCGTAGAGGGCTCATCATTTGAAGGCTTGTGTTTCAGAAATATTTCTCTTA TTGGTGTTGCCTCATCTTCAACATGGCATTGTGAACATGTCTCTGGTTTTGCCACTGATGTGTTACCTGTGCCATGTTCT GAGTTGAAGAACAATGCCAACTCATCTTGGTGTTCACCTTCCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0319800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDPEEWPIIEPLPSYGRGRERLGGRHISLIHGNGVRNVIITGQNGTVDGQGKMWWELWWNRTLEHTRGHLLELMYSDNVL VSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDHYGITMARPS TNIIVRRVSGTTPTCSGVGIGSEMSGGIANITIENLHVWDSAAGVRIKSDKGRGGYITNVSISDIRMERVKIPIRFSRGS NDHPDDGWDPKAVPRFKDILISNIICVNSTKAPVLEGVEGSSFEGLCFRNISLIGVASSSTWHCEHVSGFATDVLPVPCS ELKNNANSSWCSPS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.160.20.10
1 314 314 6.0E-86
IPR012334
PANTHER
PTHR31339:SF4
2 332 331 2.1E-211 –
PANTHER
PTHR31339
2 332 331 2.1E-211 –
SUPERFAMILY
SSF51126
27 323 297 1.44E-74
IPR011050
Pfam
PF00295
29 308 280 2.3E-43
IPR000743
SMART
SM00710
99 125 27 930.0
IPR006626
SMART
SM00710
126 158 33 430.0
IPR006626
SMART
SM00710
160 182 23 7100.0
IPR006626
SMART
SM00710
188 209 22 26.0
IPR006626

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004650
Molecular function Polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0319800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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