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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0320800 |
| Transcript ID | LotjaGi1g1v0320800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT5G64530.1 xylem NAC domain 1; Swiss-Prot: sp|Q8GWK6|NC104_ARATH NAC domain-containing protein 104; TrEMBL-Plants: tr|I1JY11|I1JY11_SOYBN NAC transcription factor; Found in the gene: LotjaGi1g1v0320800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77118842..77120502) extracted from Lotus japonicus Gifu genome v1.2.
AAATTATATAATCTCATGCATTGCCAAAGTCCACCGAAAACAAATTCAACACTATAGAAGATATGGCAGATGGAATTAGC ATCAATCTTCCTCCTGGGTTTCTCTTCTCCCCAACAGATGAAGAACTTGTCCTTCATTTTCTCCATTGCAAGGCTTCTTT TCTACCCTGCCATCCAAACATCATCCCTGAACTTCATCACTCTCTGCTTGATCCTTGGGAATTAAATGGTATGCTTAAGT TTTGTCACTATAATTGTTTAGATTTTCTTAATTTTCCTATCTTTCTCCATCTCTGAAATCTATCTCCTTTACATAAACTC ATTTTAGGTGGATTAATATAATACTATTTAAGATAAGTTAATTGAAATTACACCTATTTAGTTACTTAATTTGTTACAAA TAAAATAATGGATAATTCTATGGTATGCAGCCCGTTTAAAAATTGGTTCACCTACGAATCATATATTTACTGTTATAAAA GATAAAATTTATTGGACAGTTTTATGATGGACTATGTTAAAAATTGGTCCATACATGAACCATGTGTTTTACTTCCAATA TTTAATACATGTTATTTACAATATGCTTCTTATATGCTAAAATTAATTTATAGAGAAACTATTTTAACTTGTACATTTTT CTTGAGTCACAATAGACAAATTCATTTCCTATATCTTATTTGCAATGTGTTTTTGATGTGCTAAAATCAGACTTTTCTTG ATCATTAATAGACAAAGCCATAGCATTATTGAAGGGTAAGTTAGATATGCTGAATGCATGCACCTAATGAACTTCATATA TGTTGAACATATATGTACAGGTAAGGCGTTCTCAAGTGGAAATCAATACTATTTCTTCAGCAAAGTAAATGGAAACAGAT CCACAGAAATTGGGTATTGGAAGGAAATAGGTGTCACAGAACCTATTTTGTCAGCAGTTGATGAGAAAGTGGGAATTAAG AAGTACCTCGTGTTCTACATTGGCGAACCTCCACAAGGCACTGAAACCAGTTGGATGATGCAAGAATATCATATTTGCTC CTCTGGGTTGGACTCATCACCATATCCAAGTGCTTGGGGAAGAAGGAAACCTGTGAGTGAGTTTAGTAGTTTTTTTAAAT TGATATATGACCCTTCTACTAATTTAAAAATTCTAGCATACACCAGTTTGATTGATGTTGTAATTATAAACCGTGTACCA TTTTCTATGTATGCTAGACATATCCTTGTTAATAATCAATTATGGTGTGTGACAGGACATGAATTGGAGCAAGTGGGTTT TATGCAGAGTGTATGAAAAGAAGAGGTCTAAACAATGTGTAAACTGCAGCTGCAGCGATGACGATGACAGTGGATCCGAG CTTTCATGGCTTGATGAAGTTTATCTTTCGTTGGATGAGGATCCGGAAGAAATAATTAGCATGACAAATTAAATTAGACT CCGTGTATATAATATGTATGTAACGCTAGATATAGATATATTTCTGGGCTTGCACTTTAGTGACAATGTCTCAGTTATGG GCCTTTGAACGATATAATTAGGACTTCTTTGTGTGCAGGATTGGCAATTGTATGCCCACCAAAAATGTTTATTTCCTTAA GTTGGCACACTCTGTAAAGTTATTATATAAATTTAATATATCTTAAAATACCAAATTTGCC
CDS sequence (LotjaGi1g1v0320800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATGGAATTAGCATCAATCTTCCTCCTGGGTTTCTCTTCTCCCCAACAGATGAAGAACTTGTCCTTCATTTTCT CCATTGCAAGGCTTCTTTTCTACCCTGCCATCCAAACATCATCCCTGAACTTCATCACTCTCTGCTTGATCCTTGGGAAT TAAATGGTAAGGCGTTCTCAAGTGGAAATCAATACTATTTCTTCAGCAAAGTAAATGGAAACAGATCCACAGAAATTGGG TATTGGAAGGAAATAGGTGTCACAGAACCTATTTTGTCAGCAGTTGATGAGAAAGTGGGAATTAAGAAGTACCTCGTGTT CTACATTGGCGAACCTCCACAAGGCACTGAAACCAGTTGGATGATGCAAGAATATCATATTTGCTCCTCTGGGTTGGACT CATCACCATATCCAAGTGCTTGGGGAAGAAGGAAACCTGACATGAATTGGAGCAAGTGGGTTTTATGCAGAGTGTATGAA AAGAAGAGGTCTAAACAATGTGTAAACTGCAGCTGCAGCGATGACGATGACAGTGGATCCGAGCTTTCATGGCTTGATGA AGTTTATCTTTCGTTGGATGAGGATCCGGAAGAAATAATTAGCATGACAAATTAA
Protein sequence (LotjaGi1g1v0320800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADGISINLPPGFLFSPTDEELVLHFLHCKASFLPCHPNIIPELHHSLLDPWELNGKAFSSGNQYYFFSKVNGNRSTEIG YWKEIGVTEPILSAVDEKVGIKKYLVFYIGEPPQGTETSWMMQEYHICSSGLDSSPYPSAWGRRKPDMNWSKWVLCRVYE KKRSKQCVNCSCSDDDDSGSELSWLDEVYLSLDEDPEEIISMTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 6 | 161 | 156 | 6.54E-40 | ||
| PANTHER | 7 | 203 | 197 | 1.2E-88 | – | |
| PANTHER | 7 | 203 | 197 | 1.2E-88 | – | |
| ProSiteProfiles | 9 | 161 | 153 | 37.853 | ||
| Pfam | 10 | 127 | 118 | 3.0E-24 | ||
| Gene3D | 18 | 167 | 150 | 3.4E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0320800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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