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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0321400 |
Transcript ID | LotjaGi1g1v0321400.3 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Elongation factor 4; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G9JJS4|G9JJS4_ZIZJJ Elongation factor; Found in the gene: LotjaGi1g1v0321400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77216023..77219294) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTAAGCTGATGAACTGTGCTCTATGAAATTTTGTTTATTTAGTTTGATTGGATATTCATAAGCTGATATTGAGATTT GTTTGTTTTTACAGGTGAAGTTTACAGCAGAGGAGCTGCGGCGGATTATGGACCTTAAGCATAACATTCGTAATATGTCT GTCATTGCTCATGTTGATCATGGTATGAATTAACATAGGTTTTTTTTGCTTCCTGGTTACTTTCTCTATGATGCACTTTC CTGATTGTTGTGATGTGTTCTCTGACCCTATATTTTGATGAAGATATGATAGAGTGCTTTTGTTTTAGATTATAATAAAA TGATGTTTAACTGTTAAATTGATGCTAGTTTTTAGAAATGTAAAGAAAATGATAAGCTGATTTGTGTTTAGTTACACTAA TTTAAAGCTCTTTTTTATTTTCCCTCATACATCGTAACAACTTTTTACTTGATAAGCTTATCAAAGTAGCTTTTTCAAAT TATCTGATTTCAATCTTAATTGAAATTCTTTAAAAAAGCTTACACAAACACTTAAGAAATTGAATAAATGTTTGATTTTT TAAGGAAAAAAAACTAAATCAGATTCATTCATAATTGGTGTTTGTTTGACAAGAATTATGAGTTATATTTTTGAAAAGTT CCCTTGATATAATAGTAAAAAACTGCCTTTGATATTTATTTCAGTTTTCTTTTGAACACCCATGATATCAACAATGGTTT GTCGTACAAGTGTTTAGCTGTTTGTTGGAGTGCTTTGTTCTTTGTCATATTATAATTATCATATGTTTTCTTGTCTGGAT AACAATTTATGCTTTTGGTTTCTTATTGTAGGAAAATCAACTCTCACGGACTCTCTGGTAGCTGCTGCTGGCATTATTGC ACAAGAAGTAGCAGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATTACAATTAAGTCCACTG GTATCTCACTCTACTATGAAATGACTGATGAGGCTCTCAAGAGTTTCAAGGGAGAGAGAATGGGCAACGAGTATCTCATT AATCTCATTGACTCACCTGGGCATGTTGACTTTTCATCTGAGGTTACTGCTGCACTTCGAATTACTGATGGAGCGCTGGT TGTGGTGGACTGTGTCGAAGGTGTCTGTGTCCAAACTGAAACTGTTCTGCGACAGGCCTTGGGAGAAAGGATTAGACCTG TTCTGACAGTCAACAAGATGGACAGATGCTTCCTTGAATTGCAGGTGGATGGAGAGGAGGCATATCAGACTTTTAGCCGT GTCATTGAGAATGCTAATGTGATCATGGCTACATATGAAGACCCATTGCTTGGTGATTGTATGGTCTATCCAGAGAAAGG AACAGTCGCTTTCTCTGCTGGTCTCCATGGATGGGCTTTTACTCTGACAAACTTTGCAAAGATGTATGCCTCTAAATTTG GTGTTGACGAGTCAAAGATGATGGAAAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCCACAAAGAAATGGACCAGCAAG AATACTGGCTCAGCTACCTGCAAGCGAGGGTTTGTTCAGTTCTGTTATGAGCCTATCAAGCAGATAATTAACACTTGTAT GAATGATCAGAAGGATAAGCTGTGGCCTATGCTGCAAAAGCTTGGAGTCACCATGAAATCTGAAGAGAAGGACCTGATGG GTAAACCATTGATGAAACGTGTCATGCAGACATGGCTCCCAGCAGCTAGTGCACTCTTGGAAATGATGATCTTTCATCTT CCATCTCCATCAACAGCCCAGAGGTATCGTGTTGAGAATTTGTACGAGGGTCCTCTTGATGATCAATATGCTGCTGCTAT CAGAAATTGTGATCCTGAGGGACCTCTAATGTTGTATGTCTCGAAGATGATTCCTGCATCTGATAAGGGTAGGTTTTTTG CTTTTGGCCGTGTCTTCTCAGGTAAGATTTCAACTGGTTTGAAGGTCAGAATTATGGGACCAAATTATGTTCCTGGTGAG AAAAAAGACCTGTATACCAAAAGTGTTCAAAGAACTGTCATTTGGATGGGAAAGAAACAGGAGACTGTTGAGGATGTTCC TTGTGGTAACACAGTTGCTTTGGTTGGTTTGGATCAATTTATCACCAAGAATGCTACATTGACAAATGAGAAGGAAGTTG ATGCCCACCCAATTCGAGCTATGAAGTTTTCTGTCTCACCTGTTGTCCGTGTCGCTGTTCAGTGTAAGGTTGCATCTGAT CTTCCTAAGCTTGTTGAAGGTCTTAAGCGGTTGGCTAAATCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGA ACACATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATTTGTTTGAAGGACTTGCAGGACGACTTCATGGGTGGAGCTG AGATTGTTAAATCTGACCCTGTTGTGTCTTTCCGTGAGACAGTTCTAGAGAGATCATGCCGCACTGTCATGAGCAAGTCT CCCAACAAGCACAACCGCCTGTACATGGAAGCAAGACCATTGGAGGACGGGCTCGCAGAAGCCATTGATGACGGCAAGAT TGGACCAAGGGATGACCCCAAAGTTCGATCCAAAATCTTGTCAGAAGAATATGGTTGGGATAAGGATCTCGCCAAGAAAA TCTGGTGTTTCGGACCTGAGACCCTTGGACCAAACATGGTGGTTGATATGTGTAAAGGAGTCCAGTATTTGAATGAAATC AAGGATTCTGTTGTTGCTGGATTCCAATGGGCCTCAAAAGAAGGTGCCCTGGCTGAAGAAAACATGAGAGCTATTTGCTT TGAAGTGTGTGATGTTGTCCTGCATGCTGATGCCATCCACAGAGGTGGTGGTCAAATCATTCCTACAGCTAGGAGAGTCT TCTATGCTTCCCAGTTGACTGCCAAACCCAGGCTTCTTGAGCCTGTTTACTTGGTTGAAATCCAGGCTCCTGAGCAAGCC CTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACACGTCTTTGAGGAAATGCAGAGGCCGGGTACTCCACTTTA CAACATCAAAGCATACCTCCCTGTCGTTGAGTCCTTTGGATTCTCCGGCACTTTGAGAGCTGCAACATCAGGTCAGGCTT TCCCACAGTGTGTCTTCGATCACTGGGATATGATGTCCTCGGATCCATTGGAGTCTGGATCACAAGCTGCAACGCTTGTT ACCGACATCCGTAAGAGGAAGGGCTTGAAGGAGCAGATGACTCCACTCTCCGAGTTTGAAGACAAGCTTTAA
CDS sequence (LotjaGi1g1v0321400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGTTTACAGCAGAGGAGCTGCGGCGGATTATGGACCTTAAGCATAACATTCGTAATATGTCTGTCATTGCTCA TGTTGATCATGGAAAATCAACTCTCACGGACTCTCTGGTAGCTGCTGCTGGCATTATTGCACAAGAAGTAGCAGGTGATG TCCGTATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATTACAATTAAGTCCACTGGTATCTCACTCTACTATGAA ATGACTGATGAGGCTCTCAAGAATCCATTGGAGTCTGGATCACAAGCTGCAACGCTTGTTACCGACATCCGTAAGAGGAA GGGCTTGAAGGAGCAGATGACTCCACTCTCCGAGTTTGAAGACAAGCTTTAA
Protein sequence (LotjaGi1g1v0321400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE MTDEALKNPLESGSQAATLVTDIRKRKGLKEQMTPLSEFEDKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 87 | 87 | 4.4E-64 | – | |
PANTHER | 1 | 87 | 87 | 4.4E-64 | – | |
Gene3D | 3 | 105 | 103 | 1.7E-27 | – | |
SUPERFAMILY | 4 | 88 | 85 | 3.05E-26 | ||
Pfam | 17 | 79 | 63 | 2.3E-22 | ||
PRINTS | 21 | 34 | 14 | 5.0E-6 | ||
ProSitePatterns | 58 | 73 | 16 | - | ||
PRINTS | 65 | 73 | 9 | 5.0E-6 | ||
PANTHER | 88 | 123 | 36 | 4.4E-64 | – | |
PANTHER | 88 | 123 | 36 | 4.4E-64 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0321400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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