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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0322400 |
| Transcript ID | LotjaGi1g1v0322400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 20; TAIR: AT5G09260.1 vacuolar protein sorting-associated protein 20.2; Swiss-Prot: sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2; TrEMBL-Plants: tr|I3T4G7|I3T4G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0322400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77400403..77406400) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTCTTTTTTTTGTCTCTGTTTTTTGGTGCGGTGGGCAGGCTGTTTTTTGCTTTTGCCAACGCCGAAGCCAAAACAC CCTGTGGAAGTGGGTTTCGCCGTTGGTGTTCGTCTGGTCAGAGGAGGTGGAATTCAATCGCAGCCACGATTACGATTACT ATGAAATTGGGATAGACAACGTTTTTGTCAATCAATGGGGAATATATTCGTGAAGAAGCCAAAGGTAACTGATGTCGATC GTGCAATTCTCGCTCTCAAGACCCAGAGACGCAAGCTTGCCCAATATCAACAAAAGGTAACTCATTCATTCATTCCCAAT TTCATTTGGCCATTGCTTTCCCTTAGATTCCTTTTTCATGGTATAGAATGCTAATTAGTATGATGATGGTGATTATAGTT AGTTAAATTGGACTATGTATTAGAATTGAATCTGTGTAAGTGATTTATGAAAAATGAATTAACAGCAGATTGATGACTTG GGTTATTTATTTCATTTCTTGGGTTTTCTTGTTTTCCAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCCCGCGA CTTGATTCGCGAAAAGAAGAAGGACAGGGCATTGTTAGCATTGAAGAAGAAGAAAGCACAAGAAGAGTTGTTGAAGCAAG TTGATGCCTGGCTTCTCAATGTTGAACAACAAGTAATTTTTAAAAAATATTGATTTTATTGTTCATTGTGTTTTGCGTCT TTCGGTCGCTTTACAATGTCTTTAGAAGAGATAACTGTGAATAAACATGATTTATTTCTCAAGTTTTTTCTTTGGTTCAG TTGGCAGATATTGAATTGGCAAGCAAGCAGAAGGCTGTGTTTGATAGTTTGAAGGCGGGTAATGATGCAATGAAAGCCAT ACAAAGTGAGATCAACATTGAGGATGTTCAGAAACTTATGGATGATACTGAAGAAGCTAAAGCTTATCAAGATGTGAGCT TGACTTCACTCTTGTCCTTACTCTTCATGTCTAGATTCATTGGACTAAGCTTGTGCTGTTTTTGAGGGGTTTCAAAATGG GGTTGTACTTGTACTGGTTTGATTGAGCTTTGATGTTTAGCAGCTGCGTTTTCTTTGCCAAAGTCCATCCCCTGCTTTCT TTCTGTTTACATTTCATCCTTTCTGATGGTTGCCATAATTTTGTTGAATTTGCAGGAAATTAGTGCTATACTAGGGGAGA AGCTATCAGCAGAAGACGAGGAGGAGATTTTAGCAGAGTTCGATAACTTGGAAACTCAGGTACATGAATTTTCAATTTTT TGTTCTTTCATATTTACTTCTATTTGACTATAATGTCATCCATTTTAAAACATTCCAATTCAACTGCTGGTTCAAGCATA ATAAGTATGGACATATATTATTATGCTTCATTTTAACCATTTCCATTTACTGTACTTCTTTATTGGATTGGAGGGAAGGC ATGTTATGATTATATTAGCCTAAGTTTATAGAGTATGTTCATAAGTAGGTAAGATTTACTTTGTGTTAGTGATGAGGAGA TGCGTTCTGCATCTAGTTGCATAATGCGACTTTCTGGTAGTTATTCTACCAGCAGAGACATAGAATTCAACTGTGTTAGC AAAGTTTTGAGCAAGTGATTGATGTATAAATTATGAATTCAAATTTCAAAATTTGGAATATTACACAAAGGAAATACAAT CATAAATCATGCCATAAAAAATATTCTTGAACAATCAAGGGAACATGAATATGCATTAGATGAACCATGCCCCTGTAAGT TGTTATTTCATGGAAATTAACCGAGTTCATATTATTTCCATCAGCTCACAGTTGAAGATCTTCCTGAAGTTCCTGCCTCA GTTTCTGAAGAAACCGATGAAAAACTGGATCTTCCTGATGTCCCAACTAAGGCACCAGCTACCAGTAGTGCTGAAGTATC TACAAAAAGAAAAGGTATGTCCCTCTCTCCTCTGTCCTACCACCATTCCCCACCCCGTGTGCAGTGGGGCAAAGTAATTA TAGAAGAGAATTGGCTAACTGCGAATGTCTGATGGTGTAACAGTTATGGAGGAACCATTGGCAGCTTGAAGAACATTTGT GACAAGTCAACTGCTTTGCAAACCAAGGTGTAGGCGTGTAGCATCTTCCCTTCATGTGTGCATGTACCTTACAAGTTACA AATACCTCTGCAAATATCATGCAGTTACTATTGTTTTTTGTATTTCTGTGTGGCATTTAATTTGTACAGAATACAGATAC GTGTATACAATACCTCATGTTTACATGTTTAACATCAATCATGCAGTGAGAAAATCATATATTTTGTTTTGTTTTGTCTT TCCATCCATTGATCACTTTGACATTCTTTTACTTTAGATGGTTCAATGCAAAGCGAATTCATGTACTAAATTATAAAATG GACCTTAGTATCCCGAACAGGTTGTTGATCAAGTTGTGTCTTTCCTGTAACTATGTCAGCCTTGTATTATGCTCGTGGGG GAATAAAGAGCTGACAATTATCAGCCACAAGGAATTTACGGCTTTAGATTGTGGAGTGATTGCACAGTATACTAAACTAC CTTGCCGTACATATATAGTAAGACCCGGTTACCAATCAAAAAGTATGAAAATGAGAAATTGGTAGATTTAGAGACATTTT TTCTTCACAAAAAGTAGGATATTCACAATTAATAAAAAATGAAATGGGTAACCAACCAGGCCTAAAATTTCAAAATAAAA TAAAATAAAGAAAAGTGAAAAAAATTTAAACAACACTGAGTTAATGATTAAAAACTCTTCTACAATTAATTTTGAAGATA GAATCAATTTTGAGAAGAAAATTGTGCCTTGGTGGACGTGTTGGCCTCCAACGCCTTTCAAACAAGCTATATGTAGCTTC TAGACTTTGGAATTAATTCTGATATAAGTAAAGTCAATATTTGAATATTTCTTTTGACAATTGATTTTAGCTCCAAATTA AGTTTCTAGATGAAGCTAGCAACTTCTGCGATAGATCATAATTAATTGTGAAATTTCACAAAAATTACTTGTGATACATT TTGAATAACCATTTATACAAGAATCACTCCAGGTAAAATAGCTTATTTAAAAGCAAATTTTCACAATAAGGAAATCCTCA TCAGGAATTAGAATCTCAACAATCACACGTACTATCCAATATCCTCTATTCATTAATAACATGATAAAATGAAATACAAC AACGGGGAGAGAGTAATTCTTCATTTGCTATATAAATACATTTTTATACATTGAGAGCTTCATTGCATCACAAATCTAAA TGAGTATCCTCTCCTTGAGAACTAGCACTCAAAATAGATGGGTGAACATTCACTTTGCTAAAATATCTTGACAGTATGAG CCGGGCAATATTCTCAGCTGCTACAGCACTTGTCTCCATAGTGCTAGCTGCATTCTCAAATGCATTCACATAGTACAGAT GCCGACCATCTAATATAAATGGTGCAAATTTTTCTGGGGCATGGTAATGAGGGTAGGCACCCCAGTTTATCCGAATTGTC TCAGTCCTCACACTGTCAAGGAAGAAATTAACCAAAAGTTACAAATTGGTCCAAGTTTACCCATCTAAGAGCTAAATGAT ATCTGAGTCCATATTATTGATATTGCTTTATTAGATTGGGAGTGTGAACAAAGGGCTGGAACAACACCATTTTTTCTATC CGGAAGTGAGCAGGTTTCTAAAATAGCAGTATGATTTAAGGCACGGGGAGAATTAACTGTTGATAGTGTTACCTGAAAAT GCTATCCAATAATGTGTCTGCCATTGGTTGACGAGAGAATATTTTATAAGTGGATTCCTTTTCGCTATGCTTCTTGAGAA CTGAGATGCTTGAAAATGGAAGTTTAGGGTCCTCTATTGTGCCCACAAGATCTGGAATTTTCGACGCAGCTTTGAAACCA AAATATACCTAGTGCACAACAACAAAGCATCAACATTAGTTGCAGCACCAAACAAAATAAAGAAAGAAGACATGTTAGAC TGACAAGGATGGAATCTGTACTACACATAGTGCATAATGTTATGTCAGTAGGCTTATGACTATCAGGTTTCGTAATACTC ACAGGGTTTAAAAGGCCCCTGACAAAAGTTGTATAAGTGTGCTGTAATTTTCTCTCAGGAATTGGAATTTGGGGGTCAAA ATTAATATTTAACTCATCCAATGGCGTAGCAATCACAGCAACTTCACAGTTGTAACTTTTTCCTGTTGTTGAATTGAGTT CATAATAATCTCCATGGTAAGCAACAGATTTTATTTCTTCATTGAGATGTAATGCAACATCTGATCGATTAATCAACCCA GCAGCCATTTGCCAATTACCACCACTAATGGACCACAGCCCTCCACCTGATCCTGCCAGAGAAACTGCACCAGCTAAACC ACTCATGTAGACACTCTGCCCATAATTAATACGTGTGATGACCTGCATGAATAAACAGAACTAAATTCCATGTTCTGATG AGTTACTCCAAATCTAAGATGCAGCTCCTTTCTATAGTTGTGAGATATTTTGTTCTATTGAAACACTATACGTTCACATA AAACCCAGTACTGCTAAATTGGTAATGAGTTGACACAAACATGGTAAGAATCAAAACTCAAAAGCCCTGAAAAACTTGAT GGCTTCTAATTTTGGCATATTTAGCTGTGCATTTGCAGCCTCCAAACCATGTTTTCAATCTTCACACTATGGTTTTGTGA ATTTCGAAGATGTTTGGAAACATATTTGTCAAATTTTCAAACATGGTTTGGAGGGTTGAAACGTCGACTTATCAAAAACA ACTCTAACTAGCTTTTGTGTTTAAGATAATGAAATTCAAACATAAATTACTACACTTCAAATCATGTTTAACCAAATCAA TTTTACAAAACTCAAGTCCATTCAAAACACACTCTTGCTAATAAATATTCAAAAGGATAGTGAGAATTCTTACAGTGACA AGTTCATTGATCAACAAGGGAGACAAGCCAGCATCAACCAATTCATCTTCCAAAGTCCTGGTAGTAAGATTATACAAACC AGCCCATTTCAGCATCTCATCCACAGTCTCAAAAACAGGCCTAGAACCAGGTTCCTCATAGTACTTCAAGAACCTACCCA CAGTGCTCTAAACACCACAACATCATCAGAAACTCAAACAATGAAACTAACAACTGAAGCGATGAAATAAATTCAAAGGG GAAACAACCTCAACAAAGTTCTGCATCTTCAGAAGCGAAAACCCGTAGCGAAGGAACATGCGCGCGGAATTGAAGAGGGA AACGAGAGTATCAATGAATGGGAGTTTGAGGAGTTCATCGATGAGGGGAAGATCGGAGCTAATCTCAACGGTTTTGAAAA CGAACTTGTTGCCATCCCAAATGCCAAGAGAGAGGGAATCAGAGCCAGGCGGCTTGACCTTGAGCTTGAGAAGCTTGGTG TAATCGACGGCGTGGAGGTTCTTGGGGTGGAGAATTGAGGCTCCGGCTTCGAAGGTCTCGCCGGCGATGGTTACGGTGGC TATGCGACCCCCGACGATGGCGTTGCGCTCGAAGACTAGGATTTTGGTGGTGGGAGTGGGTTCTGGTGAGTATTTGCGGA GGAAGTGAGCGACGGAGGAGCCGGCGATGCCGGCGCCGACGATGCAGACGGTGGGTGGTGGAGCATCGGAGTGCGGTTGA GCTTGGGAGAGTGAGAGGAAAGTCAACAAGATAGGGAGTATCATCCTTAGATCAAATCGGATGAATAAAGAAATCTTATA GTAATATTTATGTAGAGAAGTGTACATTTTTCTCATGTAACCAAAAAAAAAATGTAGAGAAGTGAACCTGAACGATACAT CATATACTCTTCATTATATAGTTGGAGAACTCAAAACTCTAGTGACAAGTATATCGAACTTAGATGATGTTCTAAGTTGA CTATGTTACATGAATGAATGAGAGAGAGAATCAAGGGGAATAATAACTGATTCATTTGACTAGTCTTAAGGATCAAGG
CDS sequence (LotjaGi1g1v0322400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATATATTCGTGAAGAAGCCAAAGGTAACTGATGTCGATCGTGCAATTCTCGCTCTCAAGACCCAGAGACGCAA GCTTGCCCAATATCAACAAAAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCCCGCGACTTGATTCGCGAAAAGA AGAAGGACAGGGCATTGTTAGCATTGAAGAAGAAGAAAGCACAAGAAGAGTTGTTGAAGCAAGTTGATGCCTGGCTTCTC AATGTTGAACAACAATTGGCAGATATTGAATTGGCAAGCAAGCAGAAGGCTGTGTTTGATAGTTTGAAGGCGGGTAATGA TGCAATGAAAGCCATACAAAGTGAGATCAACATTGAGGATGTTCAGAAACTTATGGATGATACTGAAGAAGCTAAAGCTT ATCAAGATGAAATTAGTGCTATACTAGGGGAGAAGCTATCAGCAGAAGACGAGGAGGAGATTTTAGCAGAGTTCGATAAC TTGGAAACTCAGCTCACAGTTGAAGATCTTCCTGAAGTTCCTGCCTCAGTTTCTGAAGAAACCGATGAAAAACTGGATCT TCCTGATGTCCCAACTAAGGCACCAGCTACCAGTAGTGCTGAAGTATCTACAAAAAGAAAAGTTATGGAGGAACCATTGG CAGCTTGA
Protein sequence (LotjaGi1g1v0322400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKAQEELLKQVDAWLL NVEQQLADIELASKQKAVFDSLKAGNDAMKAIQSEINIEDVQKLMDDTEEAKAYQDEISAILGEKLSAEDEEEILAEFDN LETQLTVEDLPEVPASVSEETDEKLDLPDVPTKAPATSSAEVSTKRKVMEEPLAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 215 | 215 | 1.1E-104 | – | |
| PANTHER | 1 | 215 | 215 | 1.1E-104 | – | |
| Gene3D | 13 | 90 | 78 | 8.1E-6 | – | |
| Coils | 14 | 48 | 35 | - | – | |
| Pfam | 17 | 194 | 178 | 3.1E-43 | ||
| Coils | 50 | 70 | 21 | - | – | |
| MobiDBLite | 169 | 215 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi1g1v0322400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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