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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005024
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We have found 47 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.664s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0054389.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Glycine max] gi|356530521|ref|XP_003533829.1| chr0 17408136 17413161 -
2 domain predictions
1 GO term
Lj0g3v0097069.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2-like [Cucumis sativus] gi|449446558|ref|XP_004141038.1| chr0 40971893 40973830 -
2 domain predictions
1 GO term
Lj0g3v0247329.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2-like [Glycine max] gi|356562097|ref|XP_003549310.1| chr0 128169306 128170059 +
2 domain predictions
1 GO term
Lj0g3v0304429.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like [Cicer arietinum] gi|502156366|ref|XP_004510438.1| chr0 158559928 158563265 -
2 domain predictions
1 GO term
Lj0g3v0329369.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2-like [Cucumis sativus] gi|449446558|ref|XP_004141038.1| chr0 172189233 172195642 -
2 domain predictions
1 GO term
Lj1g3v1355780.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Glycine max] gi|356508953|ref|XP_003523217.1| chr1 16160279 16162570 -
2 domain predictions
1 GO term
Lj1g3v4515560.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Vitis vinifera] gi|225438079|ref|XP_002276413.1| chr1 52971775 52974902 -
2 domain predictions
1 GO term
Lj1g3v4830120.1
n.a. PREDICTED: charged multivesicular body protein 7-like [Glycine max] gi|356572852|ref|XP_003554579.1| chr1 58256447 58259318 +
2 domain predictions
1 GO term
Lj1g3v4830120.2
n.a. PREDICTED: charged multivesicular body protein 7-like [Glycine max] gi|356572852|ref|XP_003554579.1| chr1 58256447 58259318 +
2 domain predictions
1 GO term
Lj2g3v0907510.1
n.a. Vacuolar protein sorting-associated 32-1-like protein [Aegilops tauschii] gi|475594122|gb|EMT22613.1| chr2 13759358 13760346 -
2 domain predictions
1 GO term
Lj3g3v0290390.1
n.a. PREDICTED: charged multivesicular body protein 1-like [Solanum lycopersicum] gi|460379736|ref|XP_004235617.1| chr3 1998353 1999526 +
2 domain predictions
1 GO term
Lj3g3v3053420.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Glycine max] gi|356516916|ref|XP_003527138.1| chr3 38100634 38105255 +
2 domain predictions
1 GO term
Lj4g3v2826700.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Cicer arietinum] gi|502137098|ref|XP_004502967.1| chr4 37844861 37848468 -
2 domain predictions
1 GO term
Lj4g3v3020520.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2-like [Cucumis sativus] gi|449446558|ref|XP_004141038.1| chr4 40543543 40548906 +
2 domain predictions
1 GO term
Lj4g3v3020580.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2-like [Solanum lycopersicum] gi|460387313|ref|XP_004239323.1| chr4 40557212 40560744 +
2 domain predictions
1 GO term
Lj5g3v1697760.1
n.a. PREDICTED: charged multivesicular body protein 5-like isoform X2 [Cicer arietinum] gi|502118113|ref|XP_004496107.1| chr5 24379933 24383900 -
2 domain predictions
1 GO term
Lj6g3v1105010.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Glycine max] gi|356530521|ref|XP_003533829.1| chr6 13719619 13724644 +
2 domain predictions
1 GO term
Lj6g3v1201440.1
n.a. Vacuolar protein sorting-associated protein 2 [Theobroma cacao] gi|508783057|gb|EOY30313.1| chr6 14929122 14932047 -
2 domain predictions
1 GO term
Lj6g3v1201450.2
n.a. PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like [Cucumis sativus] gi|449452546|ref|XP_004144020.1| chr6 14929281 14932047 -
2 domain predictions
1 GO term
LotjaGi1g1v0322400.1
n.a. Vacuolar protein sorting-associated protein 20; TAIR: AT5G09260.1 vacuolar protein sorting-associated protein 20.2; Swiss-Prot: sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2; TrEMBL-Plants: tr|I3T4G7|I3T4G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0322400 LjG1.1_chr1 77400403 77406400 -
2 domain predictions
1 GO term
LotjaGi1g1v0549300.1
n.a. Charged multivesicular body protein 1; TAIR: AT1G17730.1 vacuolar protein sorting 46.1; Swiss-Prot: sp|Q8LE58|CHM1A_ARATH ESCRT-related protein CHMP1A; TrEMBL-Plants: tr|I1M5E2|I1M5E2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0549300 LjG1.1_chr1 107930865 107933639 +
2 domain predictions
1 GO term
LotjaGi1g1v0707200.1
n.a. Vacuolar sorting-associated protein 2-like protein; TAIR: AT1G03950.1 vacuolar protein sorting-associated protein 2.3; Swiss-Prot: sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3; TrEMBL-Plants: tr|I3T2I7|I3T2I7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0707200 LjG1.1_chr1 127554868 127558672 +
2 domain predictions
1 GO term
LotjaGi1g1v0753900.1
n.a. Charged multivesicular body protein 7; TAIR: AT3G62080.1 SNF7 family protein; Swiss-Prot: sp|Q5FW14|CHMP7_XENTR Charged multivesicular body protein 7; TrEMBL-Plants: tr|A0A0S3S035|A0A0S3S035_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0753900 LjG1.1_chr1 132697896 132701590 +
2 domain predictions
1 GO term
LotjaGi2g1v0230300.1
n.a. Charged multivesicular body protein; TAIR: AT2G19830.2 SNF7 family protein; Swiss-Prot: sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr|A0A0A0LHT5|A0A0A0LHT5_CUCSA Uncharacterized protein; Found in the gene: LotjaGi2g1v0230300 LjG1.1_chr2 68989269 68990405 -
2 domain predictions
1 GO term
LotjaGi2g1v0230300.2
n.a. Charged multivesicular body protein; TAIR: AT2G19830.2 SNF7 family protein; Swiss-Prot: sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr|A0A0A0LHT5|A0A0A0LHT5_CUCSA Uncharacterized protein; Found in the gene: LotjaGi2g1v0230300 LjG1.1_chr2 68989269 68990566 -
2 domain predictions
1 GO term
LotjaGi3g1v0022600.1
n.a. Charged multivesicular body 1; TAIR: AT1G17730.1 vacuolar protein sorting 46.1; Swiss-Prot: sp|Q8LE58|CHM1A_ARATH ESCRT-related protein CHMP1A; TrEMBL-Plants: tr|I3SH56|I3SH56_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0022600 LjG1.1_chr3 2484805 2485416 +
2 domain predictions
1 GO term
LotjaGi3g1v0416300.1
n.a. Vacuolar protein sorting-associated protein 2 1; TAIR: AT2G06530.1 SNF7 family protein; Swiss-Prot: sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1; TrEMBL-Plants: tr|I3SB43|I3SB43_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0416300 LjG1.1_chr3 82200004 82203764 -
2 domain predictions
1 GO term
LotjaGi3g1v0485800.1
n.a. Vacuolar protein sorting-associated protein 24 like 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|V7AFF3|V7AFF3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0485800 LjG1.1_chr3 90328031 90333708 +
2 domain predictions
1 GO term
LotjaGi3g1v0485800.2
n.a. Vacuolar protein sorting-associated protein 24 like 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|I3SMU3|I3SMU3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0485800 LjG1.1_chr3 90328263 90333000 +
2 domain predictions
1 GO term
LotjaGi3g1v0485800.3
n.a. Vacuolar protein sorting-associated protein 2-like protein 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|I3SMU3|I3SMU3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0485800 LjG1.1_chr3 90328263 90333000 +
2 domain predictions
1 GO term
LotjaGi4g1v0411600.1
n.a. Vacuolar protein sorting-associated protein 20; TAIR: AT5G09260.1 vacuolar protein sorting-associated protein 20.2; Swiss-Prot: sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2; TrEMBL-Plants: tr|A0A0L9UEE2|A0A0L9UEE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0411600 LjG1.1_chr4 78760627 78764442 -
2 domain predictions
1 GO term
LotjaGi4g1v0411600.2
n.a. Vacuolar protein sorting-associated protein 20; TAIR: AT5G09260.1 vacuolar protein sorting-associated protein 20.2; Swiss-Prot: sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2; TrEMBL-Plants: tr|G7JC58|G7JC58_MEDTR Vacuolar sorting-associated-like protein; Found in the gene: LotjaGi4g1v0411600 LjG1.1_chr4 78761671 78764148 -
2 domain predictions
1 GO term
LotjaGi4g1v0442300.1
n.a. Vacuolar sorting-associated protein 32-like protein; TAIR: AT2G19830.2 SNF7 family protein; Swiss-Prot: sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr|I3SYH6|I3SYH6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0442300 LjG1.1_chr4 81584771 81590953 +
2 domain predictions
1 GO term
LotjaGi4g1v0442300.2
n.a. Charged multivesicular body protein; TAIR: AT2G19830.1 SNF7 family protein; Swiss-Prot: sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr|I3SYH6|I3SYH6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0442300 LjG1.1_chr4 81585566 81589789 +
2 domain predictions
1 GO term
LotjaGi4g1v0442500.1
n.a. Charged multivesicular body protein; TAIR: AT2G19830.2 SNF7 family protein; Swiss-Prot: sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr|I3T6V8|I3T6V8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0442500 LjG1.1_chr4 81598190 81602335 +
2 domain predictions
1 GO term
LotjaGi4g1v0442500.2
n.a. Charged multivesicular body protein; TAIR: AT2G19830.2 SNF7 family protein; Swiss-Prot: sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr|I3T6V8|I3T6V8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0442500 LjG1.1_chr4 81598831 81601741 +
2 domain predictions
1 GO term
LotjaGi4g1v0442700_LC.1
n.a. Charged multivesicular body protein; TAIR: AT4G29160.1 SNF7 family protein; Swiss-Prot: sp|Q9SZE4|VP322_ARATH Vacuolar protein sorting-associated protein 32 homolog 2; TrEMBL-Plants: tr|I3T6V8|I3T6V8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0442700_LC LjG1.1_chr4 81618462 81621036 +
2 domain predictions
1 GO term
LotjaGi4g1v0444900.1
n.a. Vacuolar protein sorting-associated protein 2 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|A0A0S3SCC0|A0A0S3SCC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0444900 LjG1.1_chr4 81782518 81786949 -
2 domain predictions
1 GO term
LotjaGi4g1v0444900.2
n.a. Vacuolar protein sorting-associated protein 2 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|A0A0S3SCC0|A0A0S3SCC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0444900 LjG1.1_chr4 81782855 81784900 -
2 domain predictions
1 GO term
LotjaGi5g1v0255600.1
n.a. Charged multivesicular body protein 5; TAIR: AT3G10640.1 SNF7 family protein; Swiss-Prot: sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5; TrEMBL-Plants: tr|I3SD74|I3SD74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255600 LjG1.1_chr5 56460478 56465001 +
2 domain predictions
1 GO term
LotjaGi5g1v0255600.2
n.a. Charged multivesicular body protein 5; TAIR: AT3G10640.1 SNF7 family protein; Swiss-Prot: sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5; TrEMBL-Plants: tr|I3SD74|I3SD74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255600 LjG1.1_chr5 56460774 56463584 +
2 domain predictions
1 GO term
LotjaGi5g1v0255600.3
n.a. Charged multivesicular body protein 5; TAIR: AT5G04850.1 SNF7 family protein; Swiss-Prot: sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5; TrEMBL-Plants: tr|I3SD74|I3SD74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255600 LjG1.1_chr5 56460792 56463441 +
2 domain predictions
1 GO term
LotjaGi6g1v0213700.1
n.a. Vacuolar protein sorting-associated protein 2-like 2; TAIR: AT5G44560.1 SNF7 family protein; Swiss-Prot: sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2; TrEMBL-Plants: tr|I3T952|I3T952_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0213700 LjG1.1_chr6 51232667 51237966 +
2 domain predictions
1 GO term
LotjaGi6g1v0213700.2
n.a. Vacuolar protein sorting-associated protein 2-like 2; TAIR: AT5G44560.1 SNF7 family protein; Swiss-Prot: sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2; TrEMBL-Plants: tr|I3T952|I3T952_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0213700 LjG1.1_chr6 51232672 51238251 +
2 domain predictions
1 GO term
LotjaGi6g1v0226900.1
n.a. Vacuolar protein sorting-associated protein 2 like 1; TAIR: AT2G06530.1 SNF7 family protein; Swiss-Prot: sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1; TrEMBL-Plants: tr|I3SFU1|I3SFU1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0226900 LjG1.1_chr6 53277532 53282655 -
2 domain predictions
1 GO term
LotjaGi6g1v0226900.2
n.a. Vacuolar protein sorting-associated protein 2 like 1; TAIR: AT2G06530.2 SNF7 family protein; Swiss-Prot: sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1; TrEMBL-Plants: tr|I3SFU1|I3SFU1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0226900 LjG1.1_chr6 53279872 53281915 -
2 domain predictions
1 GO term
LotjaGi6g1v0226900.3
n.a. Vacuolar protein sorting-associated protein 2 like 1; TAIR: AT2G06530.2 SNF7 family protein; Swiss-Prot: sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1; TrEMBL-Plants: tr|I3SFU1|I3SFU1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0226900 LjG1.1_chr6 53279872 53282173 -
2 domain predictions
1 GO term