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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0323700 |
| Transcript ID | LotjaGi1g1v0323700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT1G27990.1 transmembrane protein; Swiss-Prot: sp|Q65G98|SPEH_BACLD S-adenosylmethionine decarboxylase proenzyme; TrEMBL-Plants: tr|I1KBN9|I1KBN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0323700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77559138..77561406) extracted from Lotus japonicus Gifu genome v1.2.
AGGATCGATCTCATTCATCAACACCGCTCCTCTTCTCTTTCATAGCCTACGGCAACGCTCATTCCACTCTTTTCTACCTC TTCTCTTTTTACCATTTCTTTCACATGTAAGACTAATTTCCATCTCTCTTATTTGTTTCTTGTCTCTCTTATTCTGTCTC TTTTCTTAGACTCTAACACTAATCTTTCAATTTTCATCACCACTTTTGGTTCTCTTAGTCATGTATTGCCGCATCAAACA AGAGATGACAAATTAATTAGCTTGAAATTGCATCCAGTTTTGCTAATGTAAGAACACTCAGACTGTTCTGTGAATTACAA AATCAGAAACCCTTTTGATATTTACATGTACCTTGATTGAAATTGAATTAATGCTTATTACTTCTTATAATAGTTGTTTC ACAAGTGCATGGATTAGATAGCATGTTTGTATCATCATCAGCTTATTTTTTCTCAGCATTTGACACCTAGAAGCTTATTA TTTTCTCAGAATTGATTATGGCTTTATATTGTGCGTGTTTGGATCAGCAAATGTCACAATTAATTTTGGTAAAATTGATT ACATTAAAAGTCACATGAATGTCAGTAATAAAATTCAGTTGTAAAATCTCATAATTGACTGTTTATGATGCTGACTCTCT CTAGTTTGTACCTACAAAATGTCTTCCAAACATCAATTCTCTACCAGAAATTGATTACGGGAAGGAAACTAACACACTCT AAGCTTTTTAATAATTGATAGAATTGATTGTGTCAATTGTACAACGGATTTCCAAACATGCTATTTATCTTAAATGATTG CATGTGACATATCTATGTCATGTCATACACTTATATCAGCATATGTTTATGCAACAACCTTTTTGTTCCCAGATTTGGTG TCCAAGTGAAGTTTCCAAGAAGCAAGATTGTCTTTAAAAATTGTAACCTCTGAAAATATCAACAATGTCTGGTGTGACTC TAGCTGTTGATCGTTCATCAGTGCCACAACAAAGAGATGCTGCTGCTGCTACCGGCACTGCTGCTGCTACTGCTGCACCT TCAGCCACAAATCCTAAACAGCAGAAGGAACATCAACCAACCCCTCTCGGTGGCATGATGGGTTCACTGCGCGTCATAGA GCTTCAGCTCGTGGCATTCATCTTAGTTTTCTCAGCAAGTGGCCTTGTTCCACTCTTTGATCTTATCTTTCCAGCACTTG CCTCTGCATACATCTTAGCACTCTCGCGTTTCGCTTTTCCATCGCCGCCGGCCGGTTCTGTTTCTGCCTCGCCGGAGGTT TTTAAAGGAAGCAGGTTGTTTCGGATGTATGTGGTGGTTGGAACCACCGTGGGGCTGTTCTTGCCACTGGCTTACGTGCT TGGAGGGTTTGCTAGAGGGGATGAGCATGCTGTGCGTTCCGCGACGCCACATTTGTTCTTGCTCTCGTTTCAGATTTTGA CTGAGAATATTATCAGTGGGCTGTCTCTGTTTTCGCCGCCAGTGAGGGCGTTGGTGCCCATGATCTACACCATTAGGAGG ATCTTTGTGGATATGGATTGGATTACTAATGTGTGGATTAACAAGACTTTGCCTGCTAATGCACGGGTTCAGGTAATTCA TTCATTTTCATGTAAAAACCATTCATTATGTTTTGATATAATCAATTCTGATGCCGAAATCAATTTTGAGCAGAAGTTTA TGTGAGCAGTCCGGTTGAGCTTGATAGTTGCTTTAATTAACTAACAGGATTAGTCTACTAGGCCTTAGATATGTATGTTT ATGGGAAATGAATGAATATTGCAAGTGTTTTACATGTATTGCAGGACATGGCATGGCATTGGTTTGGGAAGGGTTTGGCA GTGGTCAATCTGGCTTATTTCTCCATCAATCTATTTGGGTTCTTGATACCAAGGTTCCTTCCAAGAGCTTTTGAGAGGTA TTTCCAAGAGAGGGGAGAGATCTATGCTAAGACAGCAGAGGACAAGCGATTTGTATCCAGCAACAAACCACAAGTATCAG AGAAGAAGATAGATTGAGAGCTTTAGCTAGTTTTGTTTTACTTGCAGTTTTATACAGTTTCAGCATTTTTGTAAGAAAAT TCATAATGGTTGTGTATGATGTAAATCGACCTTGACTTAAATTATGGCTCTCCATTGCATGTTAATGGAACTATATAGTA TTTGTTTTGGGTAAATTTATATATAGCATATATGCATATTTGGAGATTTCTTAAGATTCTTCTACTAATAGTAGCACCTA CTAGCCAAGTTGGGTTAGTATGATTGACC
CDS sequence (LotjaGi1g1v0323700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTGTGACTCTAGCTGTTGATCGTTCATCAGTGCCACAACAAAGAGATGCTGCTGCTGCTACCGGCACTGCTGC TGCTACTGCTGCACCTTCAGCCACAAATCCTAAACAGCAGAAGGAACATCAACCAACCCCTCTCGGTGGCATGATGGGTT CACTGCGCGTCATAGAGCTTCAGCTCGTGGCATTCATCTTAGTTTTCTCAGCAAGTGGCCTTGTTCCACTCTTTGATCTT ATCTTTCCAGCACTTGCCTCTGCATACATCTTAGCACTCTCGCGTTTCGCTTTTCCATCGCCGCCGGCCGGTTCTGTTTC TGCCTCGCCGGAGGTTTTTAAAGGAAGCAGGTTGTTTCGGATGTATGTGGTGGTTGGAACCACCGTGGGGCTGTTCTTGC CACTGGCTTACGTGCTTGGAGGGTTTGCTAGAGGGGATGAGCATGCTGTGCGTTCCGCGACGCCACATTTGTTCTTGCTC TCGTTTCAGATTTTGACTGAGAATATTATCAGTGGGCTGTCTCTGTTTTCGCCGCCAGTGAGGGCGTTGGTGCCCATGAT CTACACCATTAGGAGGATCTTTGTGGATATGGATTGGATTACTAATGTGTGGATTAACAAGACTTTGCCTGCTAATGCAC GGGTTCAGGACATGGCATGGCATTGGTTTGGGAAGGGTTTGGCAGTGGTCAATCTGGCTTATTTCTCCATCAATCTATTT GGGTTCTTGATACCAAGGTTCCTTCCAAGAGCTTTTGAGAGGTATTTCCAAGAGAGGGGAGAGATCTATGCTAAGACAGC AGAGGACAAGCGATTTGTATCCAGCAACAAACCACAAGTATCAGAGAAGAAGATAGATTGA
Protein sequence (LotjaGi1g1v0323700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGVTLAVDRSSVPQQRDAAAATGTAAATAAPSATNPKQQKEHQPTPLGGMMGSLRVIELQLVAFILVFSASGLVPLFDL IFPALASAYILALSRFAFPSPPAGSVSASPEVFKGSRLFRMYVVVGTTVGLFLPLAYVLGGFARGDEHAVRSATPHLFLL SFQILTENIISGLSLFSPPVRALVPMIYTIRRIFVDMDWITNVWINKTLPANARVQDMAWHWFGKGLAVVNLAYFSINLF GFLIPRFLPRAFERYFQERGEIYAKTAEDKRFVSSNKPQVSEKKID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 286 | 286 | 5.5E-136 | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 56 | 56 | - | – | |
| PANTHER | 1 | 286 | 286 | 5.5E-136 | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| MobiDBLite | 28 | 43 | 16 | - | – | |
| Phobius | 57 | 74 | 18 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 75 | 79 | 5 | - | – | |
| Phobius | 80 | 98 | 19 | - | – | |
| Phobius | 99 | 118 | 20 | - | – | |
| Phobius | 119 | 139 | 21 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| Phobius | 140 | 221 | 82 | - | – | |
| Phobius | 222 | 244 | 23 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 245 | 286 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0323700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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