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LotjaGi1g1v0324200.1

Overview

Field Value
Gene ID LotjaGi1g1v0324200
Transcript ID LotjaGi1g1v0324200.1
Lotus japonicus genome version Gifu v1.2
Description NAC domain-containing protein; TAIR: AT1G01720.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q39013|NAC2_ARATH NAC domain-containing protein 2; TrEMBL-Plants: tr|B3IX39|B3IX39_LOTJA Transcription factor NAC; Found in the gene: LotjaGi1g1v0324200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:77615515..77619242) extracted from Lotus japonicus Gifu genome v1.2.

CCATCATCATTCATTCATCCTAGCGAACACAGTCAACCGAAGCCGACATATTGAAATATCCAACAAAAAAAAACAACAAT ATGGTACGGAGAAAAAAAAAAGTGACGGAAGCAGTGACAAAATCACTCTCAAACAAAACACTCACACGTGCCTCCTTTGC CACGTGTTGGCTGCTCTACACAGTTCCACCCTCCACCTTAACTACGCACGTGCTTCAATTCACTGTCTCTCTATTGATTC TTCCACCCTATATAAACACCTCCATCCACTCTCTCATAGTCTCATTCCAATTTCCAAGTCACAGAGCAAAACAGAGAAGA AGAAGAATCATCATCAACATTCAACAACAACTACATCACCATCATCATCAATCAATCAACAGGAATTCAAACACCAATGA AGGGTGAATTAGAGTTGCCACCTGGGTTCAGATTCCACCCAACAGATGAAGAATTGGTGAACCACTACCTCTGCACAAAA TGTGCTGGCCAATCCTTCAACTACTCCGTTATCAAAGAAATCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGGTAA ACAACGATTTCCAATCGATTTTGTGTGAATTTCTGTGATAAAATGAGTTTTTGATGTTGACCATGAGGTGTTTGATGAAA TGCAGAAATGGGTTTTGATGGCGAGAAAGAATGGTACTTCTTTTCTCCGAGAGACCGGAAGTATCCGAATGGTTCCCGGC CGAACCGGGCGGCCGGGAGCGGGTATTGGAAGGCTACTGGAGCTGATAAACCGATTGGGAAGCCCAAGGCGTTGGGGATT AAGAAGGCACTGGTGTTTTATGTGGGGAAAGCACCTAAAGGAATCAAAACGAATTGGATCATGCATGAGTATCGTCTTGC CAATGTTGATAGATCAGCTGGAAAGAAAAGCAACTTGAGGGTATGTGATTTCATGAATTTGTTATTACAAAAGGCTTCAA TTTTTGAACTTTTTGATTGATGGGGTGTGTGAAGATTGAAAAAAGTTTCTGATATTTTGGTTTGTTTTATTTGCAGCTTG ATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACACCCCCACACCAAAGTTTTCAGGT TTAGGGGAGGTTCATGATAGTTATGATGAGCATGAGCATGAGAGGAAGCCAGAGATTCATGATCAATTGTACATGGAGGC ATCAGATTCAGTGCCCAGGCTGCACACGGATTCGAGTGGCTCGGAGCATGCGGCTTCACCTGATGTCACGTGTGACAAGG AGGTGCAGAGCGAGCCTCAGTGGAATAATGAGCTAGAGTTCAAGCTGGATGATGGCACCTTTGATTTTCAGTTCAGTTTC TTGGATGATAACAACATGTCGGTGGATGAGTACCAACTGAACCAGTTATCACCGTTGCAGGATATGTTCATGTACCTGGA AAAGCCATTTTGATTCTTCTGGTCCAAGCGTTTGTATGAATTGAAAGTGAAAGTTTTTGGGAAGGGGGAAAGGGTTTTGC CTAATTAGTTTGTAGGAAAAGTCACCATTTATGCAATTGCACCTAACTACAGCTTGTGAACCAAACAAACATTGATGCAC GTGCGGTAACTACTCTCATTCTCAGCTCTTGGGAGATATGGGAAGTTTGAACTCTGCTGACATGGACCAATTGGATTGGA CCCTACTGAAAAAAAGGAAAAGAAAATGAGATTAGGCCCTGTTGTGTGTAAGTAGTGAAAAATAAGAAGCAGGAAGATCT CAACAGGGTGCTGATCCATTCCAATGGATCATGCAATGTTAGAGTGTAAATGTGTAGGTGCAACCGTGCAAGGACTCTTA GAAAAATTCTTGTTCAATATTGTTATTGTAGTGGGATTTTTTCATATCTTTGTAATATACAACAACTTGTACTTTTCAAT TCAAAGGAAACAATTGAATGAAAATTCTTATATTCAAAGGGATAGAATGTGCATTTTATATCTACCTGTCTTATATTCAA AGGGATTCAATTTGACTACAATATGTTACATCTTCTTTCTCAAGGTTTTGGTACTTTTGACCTTTCTCACACATTGGAAC ATAGCAAGTGATTTATACGGATTAAGAAAACTTGTTTTCTGTAGTCAAATTTGAATAGATCTGAAAATCTTGAAAGACAA GATGTAACATATTGTATGAAATCTGCCAATGAATTAAATCAAGAGATGATGCATCTAATCTTCACATCAATCAGCATTAG TCTTTGGCTCTTTGCTTTGCCTTTTGCCTTTCAAATTCTAACCGTGCATTCAAACTAATATGATATGAATGATTATATGA CTGATTAGCCGAAAATACACTGTAAACTGTACCAATATACTACTATATACAACACAAGGATATCTTCTTAAGCAGATACA TTCATTTTGATACAACCACCCTTGTCTTATAAATCAGCACAATAGCTACTATCTGATGATAACAAAGATGTAAAAGAGTT CCCAAGTTGTCTTTGGTGATCAAATGCTGACATGTCTGGAATTTGGAACCCGGTTACAATCTGCTGGTGCCCAACCAATC AGTTGCTTCTCATTGTCAAATACCATCACTTTGTCTAGCATGGATATGTCTGCATAAACAAGACAGAGGAGTTTATAATG GACAGTTAATTGGCTAATACAAGCATCTGAAGAAGAGAGATAGTAACAAAATTCGTACCTCCAATTAGGTTCAGATCACC CATTCCTACTTCAGAGCCATCTAGAATGCCCAAGCAAACATTTCCCATGTTCTGAATCAACAATTTATCAGCATTTAGAA ACAAAATGTATCAGTTACTTGTGATAACAATAAAAAACCAATCTACGAGAAATTGATTAGTTGGGACTTAAGACTTACTG ATACAATCAGATATGCTTCAGGAGGGATTTCAAACTGAGTATTAGTTCTCCCACTGCTGGTGAAACTAAGTGCCATAGGC TTGAAGTATTTTCTGACTTCATATACACTTCTAAAAGGTCTTTTACCATGCCAGCAAAGAGGTAAAGTTTGGTCATCCGG TGCTTCTTTCAGGGGTTTTCCAGCTAATTCCTTCTTCAACTGCGCATGGAAATTGAACAAAAGACTCATGTTAAGTAGTA TGGAAACATTTTCTTGTATTACTTCAAACAATTCAAATCTTGCATGATGAAATTGACATGATCTTATTAATGTCTATTGC ATTTTGAAATTCTTGAGATTGGAGGACATATTGAAATTTTCTCTGAACTGACCCAAGATATTACTGCTTGGTAAGCATTA GAGTTGAAGTAAGTGTACGAACTCCCCGTGTCGAAAACAGGAAGAAGGCCTCCAATTCCAGTCTTCTTCCCTCCAAAAAT GAGTTCGGCAGCCCCTGCTACGTAATGTTTTCTATGACAAATCACAAAGATGGGATTACAATCAGGAGAAAGGATTATAA TTCATCACAATACATGTGGAAAATGTAAAATGAGGATCAAAGTTCTGGAAGGTTCTGCTTACAAATCTCTGGATGACATT GGAGTCCAAGTCAGTCGAGAAGAGTCATAAACATCCCCAAAGAAGATATACCCTCCTCCTTGTGCACTCAAACAGTGTCC AACCACATTTCGCACCAAACCCTGACTATTCAACTGTGATACCAAGCTGGATTTTCCCCTGCCAAGGCCAAGCATTCCAT CTAAGGGGTGGTAAGAAGAATCTGGAAAAAGCTGATCATATCCACATC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0324200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGGGTGAATTAGAGTTGCCACCTGGGTTCAGATTCCACCCAACAGATGAAGAATTGGTGAACCACTACCTCTGCAC AAAATGTGCTGGCCAATCCTTCAACTACTCCGTTATCAAAGAAATCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAG AAATGGGTTTTGATGGCGAGAAAGAATGGTACTTCTTTTCTCCGAGAGACCGGAAGTATCCGAATGGTTCCCGGCCGAAC CGGGCGGCCGGGAGCGGGTATTGGAAGGCTACTGGAGCTGATAAACCGATTGGGAAGCCCAAGGCGTTGGGGATTAAGAA GGCACTGGTGTTTTATGTGGGGAAAGCACCTAAAGGAATCAAAACGAATTGGATCATGCATGAGTATCGTCTTGCCAATG TTGATAGATCAGCTGGAAAGAAAAGCAACTTGAGGCTTGATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGGAAG ATTGAGAAATACAACACCCCCACACCAAAGTTTTCAGGTTTAGGGGAGGTTCATGATAGTTATGATGAGCATGAGCATGA GAGGAAGCCAGAGATTCATGATCAATTGTACATGGAGGCATCAGATTCAGTGCCCAGGCTGCACACGGATTCGAGTGGCT CGGAGCATGCGGCTTCACCTGATGTCACGTGTGACAAGGAGGTGCAGAGCGAGCCTCAGTGGAATAATGAGCTAGAGTTC AAGCTGGATGATGGCACCTTTGATTTTCAGTTCAGTTTCTTGGATGATAACAACATGTCGGTGGATGAGTACCAACTGAA CCAGTTATCACCGTTGCAGGATATGTTCATGTACCTGGAAAAGCCATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0324200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKGELELPPGFRFHPTDEELVNHYLCTKCAGQSFNYSVIKEIDLYKFDPWQLPEMGFDGEKEWYFFSPRDRKYPNGSRPN RAAGSGYWKATGADKPIGKPKALGIKKALVFYVGKAPKGIKTNWIMHEYRLANVDRSAGKKSNLRLDDWVLCRIYNKKGK IEKYNTPTPKFSGLGEVHDSYDEHEHERKPEIHDQLYMEASDSVPRLHTDSSGSEHAASPDVTCDKEVQSEPQWNNELEF KLDDGTFDFQFSFLDDNNMSVDEYQLNQLSPLQDMFMYLEKPF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31719
2 282 281 1.5E-127 –
PANTHER
PTHR31719:SF16
2 282 281 1.5E-127 –
SUPERFAMILY
SSF101941
3 157 155 3.14E-61
IPR036093
ProSiteProfiles
PS51005
7 157 151 59.693
IPR003441
Pfam
PF02365
8 131 124 1.7E-38
IPR003441
Gene3D
G3DSA:3.30.310.150
16 163 148 4.8E-63
IPR036093
MobiDBLite
mobidb-lite
168 187 20 - –
MobiDBLite
mobidb-lite
204 224 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0324200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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