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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0329200 |
Transcript ID | LotjaGi1g1v0329200.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Kinase family protein; TAIR: AT2G40980.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q6RET6|CCAMK_PEA Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase; TrEMBL-Plants: tr|K7KVC9|K7KVC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0329200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78435151..78437187) extracted from Lotus japonicus Gifu genome v1.2.
CTGGTTGACCTGGAGTTATTCACACAGTATCTTGAGGAATGGGTCTTGGAGAATCTAAATGGTGATTCAGCAGATGGGTC TCAAAGTTTTAGTTCTCCCTTCACGATTGATGAGTTGCGCAAGCTTGATTTGGCATTAGAGGGGGTTCCATTTCAGCAAT TGGTTCGTATGCCAATCCTCTCTGAGGTTTCTGATGACTATTTGGAAGATCAGTATCTAGCAGCAGAAGATTTCCTTCAC GCCATCATCATTGGCCTTTGGCGTACATTTTGGCATAAAAGTGGACCACTGCCATTATGTGTCTCCTGCCCCTCTCATGT TGGTTCTAAGTTCAGCAGTGTGGAGAAAGCAATGTCAAGGGGAAGGTTGAAGGAAATGCGCGGCTTAGCTCTAATATCAA AAAATGAGAGTGATTTGAGATTCAAATGGGATCAGGTGGTAGAGTTTGCCTTATTCAAGCCAGAAGTAATCTTGGACAAT GTTTTGAGAGTGTCAGCCAGTACTATTTGTGAAGCTCTCTTTTATGGCTTCCATGTTCTCGTTTCGCGCAGTTTGAGCAA GATAAGTTCAATTAACAGTGATTCTGTTTTTCTGCTAGTTCTTGATTCTAAGTGTGGCACGGTGATGAAGCTCAGTGGTG ACCTTGGCAAACTTGATTTGCTAAATTCAAGCAATCCATATCTGTCTGTGGCTGAATGGATAAAAACTCATGCTGAAATT TGTGTCACCCGGGCGGAACCAATATGGAACAGATTGGGAAATGCCAAATGGGGGGATATAGGAACTCTGCAGATACTATT GGCAACTTTCTACTCTATTGCCCAGTGGAACGGACCGCCACGAAAATCAGTTGCCTCATTAATCTCAGATCACAGCCTTC GCCTTCAGAAGCGCCGGACAGAATGCTGCATCGTTGAGACTGAAAATGCACTGATTCCTTATCATGGTGCAGGAGAGATT GTTGAACTTGACCAAAATGAGTTCTTTTCCAAAAATCGAGCCTCACGTCTGAAGCTGAAGCACGGCGACATATTGGTCTT GGATGATCCGCAGCAGGGTCAGAAAAGTTTCCAAATTCATGAATCTTTGGTCGGAGGGAACTACTATCTCTATGGTTCAG TGTGTCTTGATCATCCTTCAGAGTTATTGTCTTTATATGTAGGTGCTCATCCATCTAGACTTGAGCCTTCTTGGGAGGAT ATGAGCCTCTGGTATCAAGTGCAACGTCAAACAAAAGTGCTAAACATTTTGAGGAATCAAGGAATCTTGAGCAAACATTT ACCCGAAATTGTTGCCTCAGGTAAGATTGTACATTCCGGTCCTTGCAAGAAAGAAAGCCCTGGAGGAAAGTGTGATCATC CATGGTGCGGCACTCCGATTCTGGTGACATCTCCGGTAGGGGAGCCACTAACATCTGTAATTGCTCATGAGGGGACATTT TCTGCTGATGAAGCAACGCGCTTATGCCGAGACTGTCTCGCCGCTCTCAGAAGCGCAGCTGTGGCTAATGTCCAGCATGG TGATATCTGTCCAGAGAACATAATACGTGTTGACGAAAGACAAGGAGTTGCAAATAACCAAGCAATGTATGTCCCGATAT CTTGGGGGCGCGCCGTGTTGGAAGATAGGGATAGCCCTGCTATAAACTTGCAATTCTCATCATCTCATGCACTTCAGCAT GGGAAGCTGTGTCCATCTTCTGATGCTGAAAGCATTGTCTACATTCTTTATTTTATCTGTGGAGGGACCATGAGTCAACA AGATTCTATTGAGTCTGCTTTGCAATGGAGAGAGCGAAGCTGGGCGAAGCGCGTGATCCAGCAACATCTTGGTCAGGTTT CTGCTCTCTTGAAAGCATTTGCTGATTATGTTGATAGCCTTTGTGGAACTCCATACCCTGTTGACTATGATATATGGTTG AAGAGGCTGAACAAGGCTGTGGAAGGATCAGCAGATAAAGGTAAAATGATTGAAGAAATGGCGGTAACTTTGAGATTAGA AGATGCTGCAGAGTCTTCAGGAGCTTCTGGCTCTTGA
CDS sequence (LotjaGi1g1v0329200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATCCTCTCTGAGGTTTCTGATGACTATTTGGAAGATCAGTATCTAGCAGCAGAAGATTTCCTTCACGCCATCAT CATTGGCCTTTGGCGTACATTTTGGCATAAAAGTGGACCACTGCCATTATGTGTCTCCTGCCCCTCTCATGTTGGTTCTA AGTTCAGCAGTGTGGAGAAAGCAATGTCAAGGGGAAGGTTGAAGGAAATGCGCGGCTTAGCTCTAATATCAAAAAATGAG AGTGATTTGAGATTCAAATGGGATCAGGTGGTAGAGTTTGCCTTATTCAAGCCAGAAGTAATCTTGGACAATGTTTTGAG AGTGTCAGCCAGTACTATTTGTGAAGCTCTCTTTTATGGCTTCCATGTTCTCGTTTCGCGCAGTTTGAGCAAGATAAGTT CAATTAACAGTGATTCTGTTTTTCTGCTAGTTCTTGATTCTAAGTGTGGCACGGTGATGAAGCTCAGTGGTGACCTTGGC AAACTTGATTTGCTAAATTCAAGCAATCCATATCTGTCTGTGGCTGAATGGATAAAAACTCATGCTGAAATTTGTGTCAC CCGGGCGGAACCAATATGGAACAGATTGGGAAATGCCAAATGGGGGGATATAGGAACTCTGCAGATACTATTGGCAACTT TCTACTCTATTGCCCAGTGGAACGGACCGCCACGAAAATCAGTTGCCTCATTAATCTCAGATCACAGCCTTCGCCTTCAG AAGCGCCGGACAGAATGCTGCATCGTTGAGACTGAAAATGCACTGATTCCTTATCATGGTGCAGGAGAGATTGTTGAACT TGACCAAAATGAGTTCTTTTCCAAAAATCGAGCCTCACGTCTGAAGCTGAAGCACGGCGACATATTGGTCTTGGATGATC CGCAGCAGGGTCAGAAAAGTTTCCAAATTCATGAATCTTTGGTCGGAGGGAACTACTATCTCTATGGTTCAGTGTGTCTT GATCATCCTTCAGAGTTATTGTCTTTATATGTAGGTGCTCATCCATCTAGACTTGAGCCTTCTTGGGAGGATATGAGCCT CTGGTATCAAGTGCAACGTCAAACAAAAGTGCTAAACATTTTGAGGAATCAAGGAATCTTGAGCAAACATTTACCCGAAA TTGTTGCCTCAGGTAAGATTGTACATTCCGGTCCTTGCAAGAAAGAAAGCCCTGGAGGAAAGTGTGATCATCCATGGTGC GGCACTCCGATTCTGGTGACATCTCCGGTAGGGGAGCCACTAACATCTGTAATTGCTCATGAGGGGACATTTTCTGCTGA TGAAGCAACGCGCTTATGCCGAGACTGTCTCGCCGCTCTCAGAAGCGCAGCTGTGGCTAATGTCCAGCATGGTGATATCT GTCCAGAGAACATAATACGTGTTGACGAAAGACAAGGAGTTGCAAATAACCAAGCAATGTATGTCCCGATATCTTGGGGG CGCGCCGTGTTGGAAGATAGGGATAGCCCTGCTATAAACTTGCAATTCTCATCATCTCATGCACTTCAGCATGGGAAGCT GTGTCCATCTTCTGATGCTGAAAGCATTGTCTACATTCTTTATTTTATCTGTGGAGGGACCATGAGTCAACAAGATTCTA TTGAGTCTGCTTTGCAATGGAGAGAGCGAAGCTGGGCGAAGCGCGTGATCCAGCAACATCTTGGTCAGGTTTCTGCTCTC TTGAAAGCATTTGCTGATTATGTTGATAGCCTTTGTGGAACTCCATACCCTGTTGACTATGATATATGGTTGAAGAGGCT GAACAAGGCTGTGGAAGGATCAGCAGATAAAGGTAAAATGATTGAAGAAATGGCGGTAACTTTGAGATTAGAAGATGCTG CAGAGTCTTCAGGAGCTTCTGGCTCTTGA
Protein sequence (LotjaGi1g1v0329200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPILSEVSDDYLEDQYLAAEDFLHAIIIGLWRTFWHKSGPLPLCVSCPSHVGSKFSSVEKAMSRGRLKEMRGLALISKNE SDLRFKWDQVVEFALFKPEVILDNVLRVSASTICEALFYGFHVLVSRSLSKISSINSDSVFLLVLDSKCGTVMKLSGDLG KLDLLNSSNPYLSVAEWIKTHAEICVTRAEPIWNRLGNAKWGDIGTLQILLATFYSIAQWNGPPRKSVASLISDHSLRLQ KRRTECCIVETENALIPYHGAGEIVELDQNEFFSKNRASRLKLKHGDILVLDDPQQGQKSFQIHESLVGGNYYLYGSVCL DHPSELLSLYVGAHPSRLEPSWEDMSLWYQVQRQTKVLNILRNQGILSKHLPEIVASGKIVHSGPCKKESPGGKCDHPWC GTPILVTSPVGEPLTSVIAHEGTFSADEATRLCRDCLAALRSAAVANVQHGDICPENIIRVDERQGVANNQAMYVPISWG RAVLEDRDSPAINLQFSSSHALQHGKLCPSSDAESIVYILYFICGGTMSQQDSIESALQWRERSWAKRVIQQHLGQVSAL LKAFADYVDSLCGTPYPVDYDIWLKRLNKAVEGSADKGKMIEEMAVTLRLEDAAESSGASGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 621 | 621 | 0.0 | – | |
PANTHER | 1 | 621 | 621 | 0.0 | – | |
Gene3D | 282 | 617 | 336 | 3.1E-8 | – | |
SUPERFAMILY | 401 | 590 | 190 | 1.37E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0329200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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