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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011009
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 3629 results. Now displaying 1 of 73 with 50 rows per page. This search has taken 6.262s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3023720.1
LjKlavier leucine-rich repeat receptor-like kinase [Lotus japonicus] gi|353677868|dbj|BAL04590.1| chr1 34474974 34479067 +
2 domain predictions
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Lj2g3v1467920.1
LjSymRK receptor-like kinase SYMRK [Lotus japonicus] gi|21622628|gb|AAM67418.1|AF492655_1 chr2 23244149 23250251 -
2 domain predictions
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Lj2g3v1828350.1
LjNfr5 Nod-factor receptor 5 [Lotus japonicus] gi|37651074|emb|CAE02597.1| chr2 27399749 27402036 -
2 domain predictions
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Lj2g3v2904690.1
LjNfr1 Nod-factor receptor 1b [Lotus japonicus] gi|37651060|emb|CAE02590.1| chr2 37916948 37922957 +
2 domain predictions
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Lj3g3v1739280.1
LjCCaMK RecName: Full=Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase; Short=LjCCaMKgi|116634228|emb|CAJ76699.1| calcium calmodulin-dependent protein kinase [Lotus japonicus] gi|122250440|sp|A0AAR7.1|CCAMK_LOTJA chr3 21980800 21987089 +
2 domain predictions
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Lj3g3v3375770.1
LjHar1 hypernodulation aberrant root formation protein [Lotus japonicus] gi|24940156|emb|CAD42335.1| chr3 41520393 41525499 +
2 domain predictions
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Lj4g3v0281040.1
LjFls2 flagellin-sensing 2-like protein [Lotus japonicus] gi|355346200|gb|AER60531.1| chr4 3284600 3289068 +
2 domain predictions
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Lj0g3v0001859.1
n.a. Receptor kinase [Medicago truncatula] gi|357501751|ref|XP_003621164.1| chr0 548278 551234 +
2 domain predictions
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Lj0g3v0002709.1
n.a. PREDICTED: probable inactive receptor kinase At1g48480-like [Glycine max] gi|356522867|ref|XP_003530064.1| chr0 894057 905814 +
2 domain predictions
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Lj0g3v0002709.2
n.a. PREDICTED: probable inactive receptor kinase At1g48480-like [Glycine max] gi|356522867|ref|XP_003530064.1| chr0 903962 905325 +
2 domain predictions
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Lj0g3v0004239.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like isoform X1 [Cicer arietinum] gi|502158481|ref|XP_004511169.1| chr0 1486200 1495290 -
2 domain predictions
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Lj0g3v0004239.2
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like isoform X1 [Cicer arietinum] gi|502158481|ref|XP_004511169.1| chr0 1491342 1495290 -
2 domain predictions
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Lj0g3v0007739.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max] gi|356510820|ref|XP_003524132.1| chr0 3025281 3026071 -
2 domain predictions
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Lj0g3v0008839.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Glycine max] gi|356517903|ref|XP_003527625.1| chr0 3594790 3597374 +
2 domain predictions
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Lj0g3v0008959.1
n.a. PREDICTED: probable serine/threonine-protein kinase abkC-like [Cicer arietinum] gi|502077591|ref|XP_004485695.1| chr0 3639204 3643552 -
2 domain predictions
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Lj0g3v0009119.1
n.a. PREDICTED: probable serine/threonine-protein kinase WNK5-like [Cicer arietinum] gi|502146388|ref|XP_004506432.1| chr0 3754445 3756874 -
2 domain predictions
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Lj0g3v0009879.1
n.a. Kinase R-like protein [Medicago truncatula] gi|357438749|ref|XP_003589651.1| chr0 4084536 4084772 -
2 domain predictions
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Lj0g3v0009889.1
n.a. n.a. chr0 4084536 4084745 -
2 domain predictions
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Lj0g3v0010069.1
n.a. PREDICTED: probable receptor-like protein kinase At5g39030-like isoform X2 [Cicer arietinum] gi|502123882|ref|XP_004498297.1| chr0 4105156 4105460 -
2 domain predictions
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Lj0g3v0014239.1
n.a. PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max] gi|356545884|ref|XP_003541363.1| chr0 5444221 5447256 -
2 domain predictions
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Lj0g3v0015599.1
n.a. PREDICTED: lysM domain receptor-like kinase 4-like [Cicer arietinum] gi|502123143|ref|XP_004498011.1| chr0 6070015 6070491 -
2 domain predictions
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Lj0g3v0019189.1
n.a. PREDICTED: probable inactive receptor kinase RLK902-like [Cicer arietinum] gi|502163215|ref|XP_004512763.1| chr0 7588157 7590806 +
2 domain predictions
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Lj0g3v0019209.1
n.a. PREDICTED: probable inactive receptor kinase RLK902-like [Cicer arietinum] gi|502163215|ref|XP_004512763.1| chr0 7596646 7599369 -
2 domain predictions
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Lj0g3v0019539.1
n.a. PREDICTED: serine/threonine-protein kinase PBS1-like isoform X2 [Cicer arietinum] gi|502083819|ref|XP_004487574.1| chr0 7745945 7749305 -
2 domain predictions
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Lj0g3v0022049.1
n.a. NAK-type protein kinase precursor [Glycine max] gi|351727489|ref|NP_001238698.1| chr0 8903111 8905216 +
2 domain predictions
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Lj0g3v0023009.1
n.a. Transmembrane kinase 1 isoform 2 [Theobroma cacao] gi|508711195|gb|EOY03092.1| chr0 9216087 9217700 +
2 domain predictions
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Lj0g3v0023839.1
n.a. Os06g0714200 [Oryza sativa Japonica Group] gi|297606501|ref|NP_001058572.2| chr0 9543424 9545758 +
2 domain predictions
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Lj0g3v0024809.1
n.a. PREDICTED: serine/threonine-protein kinase EDR1-like isoform X1 [Cicer arietinum] gi|502143842|ref|XP_004505487.1| chr0 9870862 9892442 -
2 domain predictions
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Lj0g3v0027059.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 3-like [Glycine max] gi|356537750|ref|XP_003537388.1| chr0 9973110 9974915 +
2 domain predictions
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Lj0g3v0034699.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK5-like [Glycine max] gi|356509567|ref|XP_003523519.1| chr0 11039850 11042673 +
2 domain predictions
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Lj0g3v0035439.1
n.a. PREDICTED: probable receptor-like protein kinase At1g11050-like [Cicer arietinum] gi|502124054|ref|XP_004498364.1| chr0 11295149 11297703 -
2 domain predictions
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Lj0g3v0038859.1
n.a. PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Glycine max] gi|356509460|ref|XP_003523467.1| chr0 12655520 12663549 +
2 domain predictions
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Lj0g3v0042109.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514907|ref|XP_003526143.1| chr0 13847734 13849153 -
2 domain predictions
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Lj0g3v0043799.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA-like [Glycine max] gi|356541594|ref|XP_003539259.1| chr0 14384170 14387274 -
2 domain predictions
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Lj0g3v0048319.1
n.a. phosphoenolpyruvate carboxylase-related kinase 1 [Caragana korshinskii] gi|477382160|gb|AGI78245.1| chr0 16274390 16277916 +
2 domain predictions
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Lj0g3v0050299.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710-like [Glycine max] gi|356527105|ref|XP_003532154.1| chr0 17090362 17095739 +
2 domain predictions
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Lj0g3v0055039.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2-like [Cicer arietinum] gi|502097475|ref|XP_004491002.1| chr0 17639362 17641296 +
2 domain predictions
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Lj0g3v0055799.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK5-like [Glycine max] gi|356509567|ref|XP_003523519.1| chr0 18085830 18086582 +
2 domain predictions
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Lj0g3v0057399.1
n.a. CM0545.470.nc [Lotus japonicus] gi|164605538|dbj|BAF98604.1| chr0 18850096 18850800 +
2 domain predictions
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Lj0g3v0058439.1
n.a. PREDICTED: probable receptor-like protein kinase At2g42960-like [Glycine max] gi|356501467|ref|XP_003519546.1| chr0 19220972 19225538 -
2 domain predictions
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Lj0g3v0059499.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like isoform X2 [Cicer arietinum] gi|502166662|ref|XP_004513950.1| chr0 19683288 19688507 +
2 domain predictions
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Lj0g3v0059509.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356545297|ref|XP_003541080.1| chr0 19690149 19694423 +
2 domain predictions
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Lj0g3v0059919.1
n.a. PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Cicer arietinum] gi|502082392|ref|XP_004487152.1| chr0 19889238 19906617 -
2 domain predictions
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Lj0g3v0060569.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Cicer arietinum] gi|502156240|ref|XP_004510376.1| chr0 20192211 20195123 +
2 domain predictions
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Lj0g3v0061859.1
n.a. PREDICTED: probable receptor-like protein kinase At5g47070-like [Cicer arietinum] gi|502152552|ref|XP_004508979.1| chr0 20771290 20775478 +
2 domain predictions
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Lj0g3v0063059.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g28960-like [Glycine max] gi|356565948|ref|XP_003551197.1| chr0 21276027 21279326 +
2 domain predictions
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Lj0g3v0063939.1
n.a. PREDICTED: serine/threonine-protein kinase TIO-like [Cicer arietinum] gi|502164656|ref|XP_004513201.1| chr0 21855100 21857616 +
2 domain predictions
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Lj0g3v0064079.1
n.a. PREDICTED: probable serine/threonine-protein kinase WNK4-like [Glycine max] gi|356570080|ref|XP_003553219.1| chr0 21961647 21967978 +
2 domain predictions
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Lj0g3v0065639.1
n.a. PREDICTED: somatic embryogenesis receptor kinase 2-like [Cicer arietinum] gi|502118782|ref|XP_004496399.1| chr0 22860880 22867955 -
2 domain predictions
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Lj0g3v0065639.2
n.a. PREDICTED: somatic embryogenesis receptor kinase 1-like [Glycine max] gi|356576127|ref|XP_003556185.1| chr0 22860880 22867426 -
2 domain predictions
 –